BAC Information

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BAC

Clone NameB6Ng01-043P24
Chromosome5 (Build37)
Map Location 122,940,974 - 123,102,922
singlet/doubletdoublet
Overlap geneAtp2a2, Ift81, P2rx7
Upstream geneTmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
Downstream geneP2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043P24.bB6Ng01-043P24.g
ACCDH869886DH869887
length1,0601,105
definitionDH869886|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P24, 5' end.DH869887|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,940,974 - 122,942,031)(123,101,827 - 123,102,922)
sequence
gaattcttatagcttcctccgtactccacaatctgaggaaattaaaagac
attttcatgaagtttttcttcaaaatcatcatgaaatataaaggttgatt
atatttctcacattctttggttttctgaagctttccattatcaactttct
ttttttgttgcccagtatagtctaaaaagatcctgcctcaaactcgtcag
tgctatgcaagggacgatctatcatacccagcttctcacccacattcatt
ctgttttctttctcattcagcttcctacttcccttatcccccccaacccc
cttgagacagtgtagccctggctgttctagacgttgttctgtagaccagg
ctggcctcaagctcagagatcaccagcctctgcttctcaagtactgggtg
ggattaaaggcctgcagcaccacctttgtctatgtagtttcaggacagcc
acggtcgtgtaaatagaccttgtcttaaaaacaaaaacaaaaacaaacaa
acaatgggctggagagatggcccagtggttaagagcactgctcttcctga
ggtcctgagttcaattcccagcaaccacatggtggctcacaacgatccgt
aatgagatctgacgccctcttctggagtgtctaaagacagcaacagtgta
cttacatgaaataaatcttttaaaaaagaaaagaagactgtgtcggctgc
aggagtgttctgcttacctgccacacacccacgattgcattggctaccaa
gataagcagaattacaaacggctctacaaaggctgtaatcgttttttccc
ctttcctcgaaccaagccaaaacctaaaaggaaaattgcacatgttggac
ttgcttatgtgcttttacacttagctactttcataataaaaggataaaac
attatgtaagttattatagaaaaaaatctcttgtcccttacatcctaaaa
tatagaacaaaataataataacagaagcaatgggttataatccttttctt
acttagttaaaaattactcaacaactcttattaagagttaggtttttttt
tttcctttac
gaattccacggcactcacctgcaaagggaaggtgtagtctgcagtgtcaa
agatgctgtgtcctaacttcgtcaccccaccctctgtgacattctccgtc
acctctgctatgcctttgaccttggtgtgcacggagctgataacaggctc
tttccgctggtacagcttatcgctcaccaaagcaaagctgaggacagagg
aaaaaacttcagtggcttcctcacaacagaggacagcagtttgggcggta
gattcttgggggaaggggtgtcactggagctgctgctggtgacagtctgc
ttctgcttccttgggactctccctgctacaaactggggctaccagctgta
cctgcctctcccattatcactacctactttagatggcaatctcaactcag
agatctgctctgggtgagttgaatggctctgtcccagactcagtgccaca
ctggcttggcttgctcttgtttcaggggattacattctctctctctctct
ctctctctctctcagatagggagacaggacctgtctatcctggtgccctc
ctggtccacaccgggacacccttcaaattcacaaagcccctcctagctct
gcctcttgagtgctgggattaaaggcatgtgccaccacaccctccattta
taagaaatgcacagaatcaataaatctatacagaaggaaaatggatagtt
gccaggagaggagaaatggagaggggccgttaatgggtatattacttcct
tttaagatgacagaaatacattggtagacaaaggcattattacaggatat
cgtgtacctcttaaatgacactggtgacattaaatgacatttttacatta
aaatagtccttcattcctccccccttttaagtggtcagttttatgctata
tgaatttcacctccataggttgagatgaattatcacacataaggcagatg
ccttatagaaatatcaaacaaagggaacagagtatctaagtcaggatgat
gcttcatggaggaaaaacagtgaaatggggcaaaggatagtttacaggga
gcaaacctggattcatcagactctgttttcttaaggtgcacagaatcacc
attga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122940974_122942031
seq2: B6Ng01-043P24.b_47_1106

seq1  GAATTCTTATAGCTTCCTCCGTACTCCACAATCTGAGGAAATTAAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGCTTCCTCCGTACTCCACAATCTGAGGAAATTAAAAGAC  50

seq1  ATTTTCATGAAGTTTTTCTTCAAAATCATCATGAAATATAAAGGTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATGAAGTTTTTCTTCAAAATCATCATGAAATATAAAGGTTGATT  100

seq1  ATATTTCTCACATTCTTTGGTTTTCTGAAGCTTTCCATTATCAACTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCACATTCTTTGGTTTTCTGAAGCTTTCCATTATCAACTTTCT  150

seq1  TTTTTTGTTGCCCAGTATAGTCTAAAAAGATCCTGCCTCAAACTCGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGCCCAGTATAGTCTAAAAAGATCCTGCCTCAAACTCGTCAG  200

seq1  TGCTATGCAAGGGACGATCTATCATACCCAGCTTCTCACCCACATTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCAAGGGACGATCTATCATACCCAGCTTCTCACCCACATTCATT  250

seq1  CTGTTTTCTTTCTCATTCAGCTTCCTACTTCCCTTATCCCCCCCAACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTTCTCATTCAGCTTCCTACTTCCCTTATCCCCCCCAACCCC  300

seq1  CTTGAGACAGTGTAGCCCTGGCTGTTCTAGACGTTGTTCTGTAGACCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACAGTGTAGCCCTGGCTGTTCTAGACGTTGTTCTGTAGACCAGG  350

seq1  CTGGCCTCAAGCTCAGAGATCACCAGCCTCTGCTTCTCAAGTACTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCAAGCTCAGAGATCACCAGCCTCTGCTTCTCAAGTACTGGGTG  400

seq1  GGATTAAAGGCCTGCAGCACCACCTTTGTCTATGTAGTTTCAGGACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCCTGCAGCACCACCTTTGTCTATGTAGTTTCAGGACAGCC  450

seq1  ACGGTCGTGTAAATAGACCTTGTCTTAAAAACAAAAACAAAAACAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCGTGTAAATAGACCTTGTCTTAAAAACAAAAACAAAAACAAACAA  500

seq1  ACAATGGGCTGGAGAGATGGCCCAGTGGTTAAGAGCACTGCTCTTCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGGCTGGAGAGATGGCCCAGTGGTTAAGAGCACTGCTCTTCCTGA  550

seq1  GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACGATCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACGATCCGT  600

seq1  AATGAGATCTGACGCCCTCTTCTGGAGTGTCTAAAGACAGCAACAGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCTGACGCCCTCTTCTGGAGTGTCTAAAGACAGCAACAGTGTA  650

seq1  CTTACATGAAATAAATC-TTTAAAAAAGAAAAGAAGACTGTGTCGGCTGC  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTACATGAAATAAATCTTTTAAAAAAGAAAAGAAGACTGTGTCGGCTGC  700

seq1  AGGAGTGTTCTGCTTACCTGCCACACACCCACGATTGCATTGGCTACCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTCTGCTTACCTGCCACACACCCACGATTGCATTGGCTACCAA  750

seq1  GATAAGCAGAATTACAAACGGCTCTACAAAGGCTGTAATCGTTTCTTCCC  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATAAGCAGAATTACAAACGGCTCTACAAAGGCTGTAATCGTTTTTTCCC  800

seq1  C-TTCCTCGAACCAAGCCAAAACCTAAAAGGAAAAATTGCACATGTTGGA  848
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTCCTCGAACCAAGCCAAAACCTAAAAGG-AAAATTGCACATGTTGGA  849

seq1  CTTGCTTATGTGCTTTTACACTTAGCTACTTTCATAATAAAAGGATAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTATGTGCTTTTACACTTAGCTACTTTCATAATAAAAGGATAAAA  899

seq1  CATTATGTAAGTTATTATAGAAAAAAAATCCCTTGT-CCTTACATCCT-A  946
      |||||||||||||||||||| ||||||||| ||||| ||||||||||| |
seq2  CATTATGTAAGTTATTATAG-AAAAAAATCTCTTGTCCCTTACATCCTAA  948

seq1  AATATAAGACAAAAT-ATAATAACAGAAGCAATTGGTTTATATCCTTTTC  995
      ||||||  ||||||| ||||||||||||||||| ||||   |||||||||
seq2  AATATAGAACAAAATAATAATAACAGAAGCAATGGGTTATAATCCTTTTC  998

seq1  TTACCTTAGTT-AAGATTACTCAACAACTCTTATTAAGAGTTAGGTTTTT  1044
      ||| ||||||| || |||||||||||||||||||||||||||||||||||
seq2  TTA-CTTAGTTAAAAATTACTCAACAACTCTTATTAAGAGTTAGGTTTTT  1047

seq1  TTTTTTCCCTTTAC  1058
      |||||| |||||||
seq2  TTTTTT-CCTTTAC  1060

seq1: chr5_123101827_123102922
seq2: B6Ng01-043P24.g_66_1170 (reverse)

seq1  TCAAT-GTGCTTCTGTGCGACTTAAG-AAACAGAGTCTGATG-ATCCAGC  47
      ||||| ||| ||||||||  |||||| ||||||||||||||| |||||| 
seq2  TCAATGGTGATTCTGTGCACCTTAAGAAAACAGAGTCTGATGAATCCAGG  50

seq1  TCTGCTCCCTGTAAACTTATCCTTTGCCCCATTTCACTGTTTTTCCTCCA  97
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGCTCCCTGTAAAC-TATCCTTTGCCCCATTTCACTGTTTTTCCTCCA  99

seq1  TG-AGCATCATCCTGACTTAGAT-CTCTGTTCCTTTGTTTTGATATTTCT  145
      || |||||||||||||||||||| ||||||||| ||  ||||||||||||
seq2  TGAAGCATCATCCTGACTTAGATACTCTGTTCCCTTTGTTTGATATTTCT  149

seq1  AT-AGGCATCTGCC-TATGTGTGAT-ATTCATCTC-ACCTATGGAGGTGA  191
      || ||||||||||| |||||||||| ||||||||| ||||||||||||||
seq2  ATAAGGCATCTGCCTTATGTGTGATAATTCATCTCAACCTATGGAGGTGA  199

seq1  AATTCATATAGCATAAAACTGACCACCTAAAA-GGGGGAGGAATGAAGGA  240
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  AATTCATATAGCATAAAACTGACCACTTAAAAGGGGGGAGGAATGAAGGA  249

seq1  CTATTTTAATGTAAAAATGTCATTTAATGTCACCAGTGTCATTTAAGAGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAATGTAAAAATGTCATTTAATGTCACCAGTGTCATTTAAGAGG  299

seq1  TACACGATATCCTGTAATAATGCCTTTGTCTACCAATGTATTTCTGTCAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGATATCCTGTAATAATGCCTTTGTCTACCAATGTATTTCTGTCAT  349

seq1  CTTAAAAGGAAGTAATATACCCATTAACGGCCCCTCTCCATTTCTCCTCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGGAAGTAATATACCCATTAACGGCCCCTCTCCATTTCTCCTCT  399

seq1  CCTGGCAACTATCCATTTTCCTTCTGTATAGATTTATTGATTCTGTGCAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAACTATCCATTTTCCTTCTGTATAGATTTATTGATTCTGTGCAT  449

seq1  TTCTTATAAATGGAGGGTGTGGTGGCACATGCCTTTAATCCCAGCACTCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAATGGAGGGTGTGGTGGCACATGCCTTTAATCCCAGCACTCA  499

seq1  AGAGGCAGAGCTAGGAGGGGCTTTGTGAATTTGAAGGGTGTCCCGGTGTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGCTAGGAGGGGCTTTGTGAATTTGAAGGGTGTCCCGGTGTG  549

seq1  GACCAGGAGGGCACCAGTATAGACAGGTCCTGTCTCCCTATCTGAGAGAG  590
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACCAGGAGGGCACCAGGATAGACAGGTCCTGTCTCCCTATCTGAGAGAG  599

seq1  AGAGAGAGAGAGAGAGAGAGAATGTAATCCCCTGAAACAAGAGCAAGCCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAATGTAATCCCCTGAAACAAGAGCAAGCCA  649

seq1  AGCCAGTGTGGCACTGAGTCTGGGACAGAGCCATTCAACTCACCCAGAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGTGGCACTGAGTCTGGGACAGAGCCATTCAACTCACCCAGAGC  699

seq1  AGATCTCTGAGTTGAGATTGCCATCTAAAGTAGGTAGTGATAATGGGAGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTGAGTTGAGATTGCCATCTAAAGTAGGTAGTGATAATGGGAGA  749

seq1  GGCAGGTACAGCTGGTAGCCCCAGTTTGTAGCAGGGAGAGTCCCAAGGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTACAGCTGGTAGCCCCAGTTTGTAGCAGGGAGAGTCCCAAGGAA  799

seq1  GCAGAAGCAGACTGTCACCAGCAGCAGCTCCAGTGACACCCCTTCCCCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCAGACTGTCACCAGCAGCAGCTCCAGTGACACCCCTTCCCCCA  849

seq1  AGAATCTACCGCCCAAACTGCTGTCCTCTGTTGTGAGGAAGCCACTGAAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTACCGCCCAAACTGCTGTCCTCTGTTGTGAGGAAGCCACTGAAG  899

seq1  TTTTTTCCTCTGTCCTCAGCTTTGCTTTGGTGAGCGATAAGCTGTACCAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTGTCCTCAGCTTTGCTTTGGTGAGCGATAAGCTGTACCAG  949

seq1  CGGAAAGAGCCTGTTATCAGCTCCGTGCACACCAAGGTCAAAGGCATAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGAGCCTGTTATCAGCTCCGTGCACACCAAGGTCAAAGGCATAGC  999

seq1  AGAGGTGACGGAGAATGTCACAGAGGGTGGGGTGACGAAGTTAGGACACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGACGGAGAATGTCACAGAGGGTGGGGTGACGAAGTTAGGACACA  1049

seq1  GCATCTTTGACACTGCAGACTACACCTTCCCTTTGCAGGTGAGTGCCGTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTGACACTGCAGACTACACCTTCCCTTTGCAGGTGAGTGCCGTG  1099

seq1  GAATTC  1096
      ||||||
seq2  GAATTC  1105