BAC Information

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BAC

Clone NameB6Ng01-046D22
Chromosome5 (Build37)3 (Build37)
Map Location 18,084,511 - 18,084,57572,658,687 - 72,659,845
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046D22.bB6Ng01-046D22.g
ACCDH871468DH871469
length9261,105
definitionDH871468|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D22, 5' end.DH871469|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(72,658,687 - 72,659,845)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctc
agaaaattggacatagtactaccggaggatccagcaattcctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttacgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccaaaac
ctaggatacccaagatataagatacaatttgctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatggccctccttagaagtggga
acaaaacacccttggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccttatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttatcgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgcccacagtcagc
gaattcaatgaaaacaattaaaaataaattttagaaaaaatatatgtgaa
atttgtctttctctgttgctaaattttcccaaattgactgagggaaaaat
agcctgtctttgcctgaaaggtttctcatctattagcaaggagaaaattg
aggaaggtgtttcagtgtatttgcttcatagcagtatagaaaagcttaca
tttcaccttctggtttttattcttacatgtttgtagtttagtatttaaat
ccagtttgagctcaaagtttataaaaagtattccccagatgtcacataca
gatggctcatgaaatacatttttaaaaaatactgggcagttttactcttg
ttctaattatggagtctaaaacaagtgcttggttatatgatttcactgaa
agttagcaccagttagcattataaaacatgtcaactgttaacagcacgca
aaaatttctttcttaaataatttcagaattatttggtccttttcctagaa
catactcaaataaaagcaaatattaattgaaacagattgtttttgttaca
acatacctttaacaaggatccaacatacagatgaaatataagcaagttgt
attttttgaatgtgtataaatgattcctttaatattttgtagctcaattt
gctggaaaggtaatgaagtcaagaactgaattcaccaactataaatgaga
cctgttatgagataattaccttgacagattcttggaatgtgatggcataa
aacccagaaaactcagatgtctaagatccctttcaacatctgatggtcat
ttaagaactggaaacaatctagatgtcttcaacagaggaatggatacaga
aaatgtggtacttttatacagtgatacttctcagctatttaaaaattgac
tataaaatcgcagacaatgacggctgaaatatcatcagtcacacaaacac
acaacacacacatgtatgcactcactgatagtggaattagccagcagttg
aatactcagatcgttccagctatgagctcagagaaggagacacgtgatat
ggaaagggaacaataattcacgaccattggaatagtgtggaccaagactg
aggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-046D22.b_364_428 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65

seq1: chr3_72658687_72659845
seq2: B6Ng01-046D22.g_64_1168 (reverse)

seq1  TCCCTCAGTCTTTGCTCCACACTTAATCTCCATAATTGTTCCCGTGATTA  50
      |||||||||| ||| ||||||||  || |||  ||| ||   ||||| | 
seq2  TCCCTCAGTC-TTGGTCCACACT--AT-TCC--AATGGT---CGTGAAT-  40

seq1  TTTTGTTCCCCTTTCTCATACTCACACTTTGGTCTTCCCTCTTCTTGAGC  100
      | ||||| ||||||| |||| ||||      || |  |||  || |||||
seq2  TATTGTT-CCCTTTC-CATA-TCAC------GTGTCTCCTTCTC-TGAGC  80

seq1  TTCATATGCTCTGAACTGTATCTTGAGTATTCCAAACTGCTGGGCTAATA  150
       ||||| |||  ||||   ||| |||||||||  ||||||| ||||||| 
seq2  -TCATA-GCT-GGAAC--GATC-TGAGTATTC--AACTGCT-GGCTAAT-  120

seq1  TCCACTTATCAGTGAGTGCATACCATGTGTGTGTTTGTTTGTTTGTTTTT  200
      ||||| |||||||||||||||| |||||||||| |||| ||||||     
seq2  TCCAC-TATCAGTGAGTGCATA-CATGTGTGTG-TTGTGTGTTTG-----  162

seq1  GTTTGTGACTGGATGATATTTTCAAGGCCCGTCCATTTGTCTGCGAATTT  250
         ||||||| ||||||| |||||    |||||   ||||||||| ||||
seq2  ---TGTGACT-GATGATA-TTTCA---GCCGTC--ATTGTCTGCG-ATTT  201

seq1  TATTAAGTCAATTTTTTAAATAGCTGAGAAGTATTCCACTGTATAAAAGT  300
      |||  |||||| ||||||||||||||||||||||  ||||||||||||||
seq2  TAT--AGTCAA-TTTTTAAATAGCTGAGAAGTAT--CACTGTATAAAAGT  246

seq1  ACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTAGATTGTTTC  350
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCACATTTTCTGTATCCATTCCTCTGTTGAA-GACATCTAGATTGTTTC  295

seq1  CAGTTCTTAAATGACCATCAGATGTTGAAAGGGATCTTAGACATCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTAAATGACCATCAGATGTTGAAAGGGATCTTAGACATCTGAGT  345

seq1  TTTCTGGGTTTTATGCCATCACATTCCAAGAATCTGTCAAGGTAATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTTTTATGCCATCACATTCCAAGAATCTGTCAAGGTAATTATC  395

seq1  TCATAACAGGTCTCATTTATAGTTGGTGAATTCAGTTCTTGACTTCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAGGTCTCATTTATAGTTGGTGAATTCAGTTCTTGACTTCATTA  445

seq1  CC-TTCCAGCAAATTGAGCTACAAAATATTAAAGGAATCATTTATACACA  549
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGCAAATTGAGCTACAAAATATTAAAGGAATCATTTATACACA  495

seq1  TTCAAAAAATACAACTTGCTTATATTTCATCTGTATGTTGGATCCTTGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAATACAACTTGCTTATATTTCATCTGTATGTTGGATCCTTGTT  545

seq1  AAAGGTATGTTGTAACAAAAACAATCTGTTTCAATTAATATTTGCTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATGTTGTAACAAAAACAATCTGTTTCAATTAATATTTGCTTTTA  595

seq1  TTTGAGTATGTTCTAGGAAAAGGACCAAATAATTCTGAAATTATTTAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTATGTTCTAGGAAAAGGACCAAATAATTCTGAAATTATTTAAGA  645

seq1  AAGAAATTTTTGCGTGCTGTTAACAGTTGACATGTTTTATAATGCTAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTTTGCGTGCTGTTAACAGTTGACATGTTTTATAATGCTAACT  695

seq1  GGTGCTAACTTTCAGTGAAATCATATAACCAAGCACTTGTTTTAGACTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAACTTTCAGTGAAATCATATAACCAAGCACTTGTTTTAGACTCC  745

seq1  ATAATTAGAACAAGAGTAAAACTGCCCAGTATTTTTTAAAAATGTATTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGAACAAGAGTAAAACTGCCCAGTATTTTTTAAAAATGTATTTC  795

seq1  ATGAGCCATCTGTATGTGACATCTGGGGAATACTTTTTATAAACTTTGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCATCTGTATGTGACATCTGGGGAATACTTTTTATAAACTTTGAG  845

seq1  CTCAAACTGGATTTAAATACTAAACTACAAACATGTAAGAATAAAAACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTGGATTTAAATACTAAACTACAAACATGTAAGAATAAAAACCA  895

seq1  GAAGGTGAAATGTAAGCTTTTCTATACTGCTATGAAGCAAATACACTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAAATGTAAGCTTTTCTATACTGCTATGAAGCAAATACACTGAA  945

seq1  ACACCTTCCTCAATTTTCTCCTTGCTAATAGATGAGAAACCTTTCAGGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCCTCAATTTTCTCCTTGCTAATAGATGAGAAACCTTTCAGGCA  995

seq1  AAGACAGGCTATTTTTCCCTCAGTCAATTTGGGAAAATTTAGCAACAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCTATTTTTCCCTCAGTCAATTTGGGAAAATTTAGCAACAGAG  1045

seq1  AAAGACAAATTTCACATATATTTTTTCTAAAATTTATTTTTAATTGTTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAATTTCACATATATTTTTTCTAAAATTTATTTTTAATTGTTTT  1095

seq1  CATTGAATTC  1159
      ||||||||||
seq2  CATTGAATTC  1105