BAC Information

Click to search

BAC

Clone NameB6Ng01-046F14
Chromosome5 (Build37)
Map Location 111,591,677 - 111,749,061
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneChfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1, A230057G18Rik, Cryba4, Crybb1, Tpst2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046F14.bB6Ng01-046F14.g
ACCDH871540DH871541
length1,006924
definitionDH871540|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F14, 5' end.DH871541|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,748,015 - 111,749,061)(111,591,677 - 111,592,620)
sequence
gaattctacaaaatgaaacacataaactatccgtaatatattgctgtaag
gtggcatccataagtagaatctggattcttaattcaatatgttgcatttt
ttatgggacaccattctaaattttgataaccctgtgaacatctttcatct
ggaattatctctcttggtgttattataagttccagattgggttcttttga
aggttttttttattattattttgatttaaagtatcctctaatctctgctt
tgtggcctctacgccagcatctaatttcttagttccttcattttccaaat
ctgttttaccttgatctttctagaaaagatatatagagctacagttgtta
ctgaaactgttatttgtctgttgtcagtcaaaacaaaaacacattgccct
cttttacagtgtcttcatctttttttcctctctttttttctaaatttctc
tgtcccagtccctgccccgtgttttcatattttttcccaaagatttattt
attattaaacataagtacaccatagctgtcttcagacacacgagaagagg
gcatcagatctcattacgggtggttgtgagccaccttgtggttgctggga
attgaactcaggaccttcagaagagcagtcagtgctcttacctgctgagc
catctcaccagccctgtgttttcatgttttaatggagaaaaaaaaaatta
atctttctaagtctctctatggagacttcattttttttctcttctttttt
ggactatgttcagcttgtcatgccactctgtttgcttcacagggagagtt
atttctgccttcagagctgctcactggattccgaccctgcctagctctga
gaagtgtagcacatagtgtggcttctctgcagcagagtactctcagctgg
ggcctcctagctagcctaccctgctggaactgctttggagctagtctgct
cttaccagactctgctgaccatgtaattgacattagtttgattaatgcca
cctcat
gaattcccaccccagatgttcattgcaagctctttccttccaggcattct
cccactctctaacctccgctcactgaacccaggcaaggtgtaatctatcg
gtcctccctaaccccagatcatcagggcctcttccacatcattgtggtag
ccctgttcgggctgtctgtcagctctgcagacttcccccatcctctcagg
gaccgtgtctctctcttgctgagcacctctctgccttactgctgttctgg
tgctggggaggcagcagtgagccatgatgctgcccttggatctcaggcag
gtgtgcccctggtgcctcacccaccctctgccatgtgtcaagggcttaac
caaccccatgtgttgaatggttggctgtctctggtcgggactgtctttat
ctggcgtcctcttagccagaactcagtcacttcaagtccctcgtgagatg
acccatcccttctgcttatgaaactgcagcaccacttaaggcaaaatgcg
gctctcgggtcttaaatgatttaacagagaaagcactaaccaggatccat
ctactaccaggggcacactaagcagatctgtgcatgagggctaaatttcc
ctccaagctctaaggtctgggcggcgtgatgaactagactctcacactgg
ctcagcacaaattctgtaattatcattggagtttattagagttgaaaggt
cattagaaagtgatgtatatcttcccttctccctagaattaaacagtgga
ggatctggagctacggggaggctgtaacctgcttagactcacagagatga
gtagagggaaattaaaatccgcttttatgaaagagtcccagggctcagat
ttgttacaaacgagtgccctccctctcagacgctgtttatctctcagctg
tgatcgtgcgtctgtactagcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_111748015_111749061
seq2: B6Ng01-046F14.b_44_1049 (reverse)

seq1  ATGAGGTGGGCATATAATACAAAACTTTAAATGTCATATTAACATGTGTC  50
      ||||||| ||||| ||||   |||||   ||||||| ||| ||||| |||
seq2  ATGAGGT-GGCAT-TAAT--CAAACT---AATGTCA-ATT-ACATG-GTC  40

seq1  AGGCAGAGTTCTGGGTTAAAAGAGCAGACTAAGGCTTCCCAAAGCAGTTT  100
      | |||||| |||||     ||||||||||||  |||  ||||||||||| 
seq2  A-GCAGAG-TCTGG----TAAGAGCAGACTA--GCT--CCAAAGCAGTT-  79

seq1  CCCAGCCAGGGGTGGGGCTAGCCAGGGAGGCCCCCAGCTGAGAGTACTCC  150
       |||| |||||    ||||||| | ||||| ||||||||||||||||| |
seq2  -CCAG-CAGGG--TAGGCTAGCTA-GGAGG-CCCCAGCTGAGAGTACT-C  122

seq1  TGCTGGCCAGAGAAGCCAACACCTATTGGTGCCTACAACTTCTCAGAGCT  200
      |||||  |||||||||| ||| ||||  ||| |||| |||||||||||||
seq2  TGCTG--CAGAGAAGCC-ACA-CTAT--GTG-CTAC-ACTTCTCAGAGCT  164

seq1  AGGGCAGGGTCGGAATCCAGTGAGGCAGCTCCTGGAAGGCAGAAATAACC  250
      | ||||||||||||||||||||| |||||||   |||||||||||||| |
seq2  A-GGCAGGGTCGGAATCCAGTGA-GCAGCTC--TGAAGGCAGAAATAA-C  209

seq1  TCTCCCTGTGAAGCAAAACAGAGTGGCATGACAAGCTGAACATAGTCCAA  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTGAAGC-AAACAGAGTGGCATGACAAGCTGAACATAGTCCAA  258

seq1  AAAAGAAGAGAAAAAAAATGAAGTCTCCATAGAGAGACTTAGAAAGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGAAAAAAAATGAAGTCTCCATAGAGAGACTTAGAAAGATTA  308

seq1  ATTTTTTTTTTCTCCATTAAAACATGAAAACACAGGGCTGGTGAGATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTCTCCATTAAAACATGAAAACACAGGGCTGGTGAGATGGC  358

seq1  TCAGCAGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAATTC  408

seq1  CCAGCAACCACAAGGTGGCTCACAACCACCCGTAATGAGATCTGATGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACAAGGTGGCTCACAACCACCCGTAATGAGATCTGATGCCC  458

seq1  TCTTCTCGTGTGTCTGAAGACAGCTATGGTGTACTTATGTTTAATAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCGTGTGTCTGAAGACAGCTATGGTGTACTTATGTTTAATAATAA  508

seq1  ATAAATCTTTGGGAAAAAATATGAAAACACGGGGCAGGGACTGGGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTTGGGAAAAAATATGAAAACACGGGGCAGGGACTGGGACAGA  558

seq1  GAAATTTAGAAAAAAAGAGAGGAAAAAAAGATGAAGACACTGTAAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTAGAAAAAAAGAGAGGAAAAAAAGATGAAGACACTGTAAAAGAG  608

seq1  GGCAATGTGTTTTTGTTTTGACTGACAACAGACAAATAACAGTTTCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTGTTTTTGTTTTGACTGACAACAGACAAATAACAGTTTCAGTA  658

seq1  ACAACTGTAGCTCTATATATCTTTTCTAGAAAGATCAAGGTAAAACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTAGCTCTATATATCTTTTCTAGAAAGATCAAGGTAAAACAGAT  708

seq1  TTGGAAAATGAAGGAACTAAGAAATTAGATGCTGGCGTAGAGGCCACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAATGAAGGAACTAAGAAATTAGATGCTGGCGTAGAGGCCACAAA  758

seq1  GCAGAGATTAGAGGATACTTTAAATCAAAATAATAATAAAAAAAACCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATTAGAGGATACTTTAAATCAAAATAATAATAAAAAAAACCTTC  808

seq1  AAAAGAACCCAATCTGGAACTTATAATAACACCAAGAGAGATAATTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCCAATCTGGAACTTATAATAACACCAAGAGAGATAATTCCAG  858

seq1  ATGAAAGATGTTCACAGGGTTATCAAAATTTAGAATGGTGTCCCATAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGATGTTCACAGGGTTATCAAAATTTAGAATGGTGTCCCATAAAA  908

seq1  AATGCAACATATTGAATTAAGAATCCAGATTCTACTTATGGATGCCACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACATATTGAATTAAGAATCCAGATTCTACTTATGGATGCCACCT  958

seq1  TACAGCAATATATTAC-AATAGTTTATGTGTTTCATTTTGTAGAATTC  1047
      ||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TACAGCAATATATTACGGATAGTTTATGTGTTTCATTTTGTAGAATTC  1006

seq1: chr5_111591677_111592620
seq2: B6Ng01-046F14.g_67_990

seq1  GAATTCCCACCCCAGATGTTCATTGCAAGCTCTTTCCTTCCAGGCATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCCCAGATGTTCATTGCAAGCTCTTTCCTTCCAGGCATTCT  50

seq1  CCCACTCTCTAACCTCCGCTCACTGAACCCAGGCAAGGTGTAATCTATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCTAACCTCCGCTCACTGAACCCAGGCAAGGTGTAATCTATCG  100

seq1  GTCCTCCCTAACCCCAGATCATCAGGGCCTCTTCCACATCATTGTGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCCTAACCCCAGATCATCAGGGCCTCTTCCACATCATTGTGGTAG  150

seq1  CCCTGTTCGGGCTGTCTGTCAGCTCTGCAGACTTCCCCCATCCTCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCGGGCTGTCTGTCAGCTCTGCAGACTTCCCCCATCCTCTCAGG  200

seq1  GACCGTGTCTCTCTCTTGCTGAGCACCTCTCTGCCTTACTGCTGTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTGTCTCTCTCTTGCTGAGCACCTCTCTGCCTTACTGCTGTTCTGG  250

seq1  TGCTGGGGAGGCAGCAGTGAGCCATGATGCTGCCCTTGGATCTCAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAGGCAGCAGTGAGCCATGATGCTGCCCTTGGATCTCAGGCAG  300

seq1  GTGTGCCCCTGGTGCCTCACCCACCCTCTGCCATGTGTCAAGGGCTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCCTGGTGCCTCACCCACCCTCTGCCATGTGTCAAGGGCTTAAC  350

seq1  CAACCCCATGTGTTGAATGGTTGGCTGTCTCTGGTCGGGACTGTCTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCATGTGTTGAATGGTTGGCTGTCTCTGGTCGGGACTGTCTTTAT  400

seq1  CTGGCGTCCTCTTAGCCAGAACTCAGTCACTTCAAGTCCCTCGTGAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTCCTCTTAGCCAGAACTCAGTCACTTCAAGTCCCTCGTGAGATG  450

seq1  ACCCATCCCTTCTGCTTATGAAACTGCAGCACCACTTAAGGCAAAATGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCCTTCTGCTTATGAAACTGCAGCACCACTTAAGGCAAAATGCG  500

seq1  GCTCTCGGGTCTTAAATGATTTAACAGAGAAAGCACTAACCAGGATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCGGGTCTTAAATGATTTAACAGAGAAAGCACTAACCAGGATCCAT  550

seq1  CTACTACCAGGGGCACACTAAGCAGATCTGTGCATGAGGGCTAAATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCAGGGGCACACTAAGCAGATCTGTGCATGAGGGCTAAATTTCC  600

seq1  CTCCAAGCTCTAAGGTCTGGGCGGCGTGATGAACTAGACTCTCACACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTCTAAGGTCTGGGCGGCGTGATGAACTAGACTCTCACACTGG  650

seq1  CTCAGCACAAATTCTGTAATTATCATTGGAGTTTATTAGAGTTGAAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACAAATTCTGTAATTATCATTGGAGTTTATTAGAGTTGAAAGGT  700

seq1  CATTAGAAAGTGGATGTATATCTTCCCTTCTCCCTAGAATTAAACAGTGG  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAAGT-GATGTATATCTTCCCTTCTCCCTAGAATTAAACAGTGG  749

seq1  AGGATCTGGAGCTACGGGGAGGCTGTAACCTGCTTAGACTCACAGAGGAT  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGATCTGGAGCTACGGGGAGGCTGTAACCTGCTTAGACTCACAGA-GAT  798

seq1  GAGTAGAGGGAAATTAAAATCCGCTTTTATGAAAGAAGTCCCAAGGGGCT  850
      ||||||||||||||||||||||||||||||||||| |||||||  |||||
seq2  GAGTAGAGGGAAATTAAAATCCGCTTTTATGAAAG-AGTCCCA--GGGCT  845

seq1  CAGATTTGTTAACCAAACCGAGGTGCCCCTCCCTTCTCCAGACGCTGTTT  900
      |||||||||||  |||| ||| ||| ||||||| ||| ||||||||||||
seq2  CAGATTTGTTA--CAAA-CGA-GTG-CCCTCCC-TCT-CAGACGCTGTTT  888

seq1  ATCCTCCTCCAGCCTGTGATCCGTGCCGTCTGTTACTTAGCAGT  944
      || |||   ||| ||||||| |||| |||||| ||| |||||||
seq2  AT-CTC--TCAG-CTGTGAT-CGTG-CGTCTG-TAC-TAGCAGT  924