BAC Information

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BAC

Clone NameB6Ng01-047H12
Chromosome5 (Build37)
Map Location 18,718,814 - 18,895,492
singlet/doubletdoublet
Overlap gene4921504A21Rik, Magi2
Upstream geneGnai1, LOC100041818, LOC668167
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047H12.bB6Ng01-047H12.g
ACCDH872318DH872319
length1,1561,055
definitionDH872318|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H12, 5' end.DH872319|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,894,299 - 18,895,492)(18,718,814 - 18,719,902)
sequence
gaattctataaaacacaccttttttaaccagcacttcaccacccactctc
tgaaccataagcataatttaaaattgtctctatcagtcaaaatccaatct
catggtaaggaggcagaagtgccactgtgtctcccccatagataacagct
ggaaacaaaatctgaaatcatgggttcctgtgggaggacacacaggaagc
aaagcaattaagtagagtggtaacattgggggttcaactggaaggtaaat
cagtcccaacagaagtacaaagtgtgacaaaaaaacagaaagtctgtgac
atgactgtacaccaccacccttgccacacttaccctctacccactcccta
tcaactttcttacactactagccaaaatcacagagattatctgtgtgtga
aagaatccagagtcctctattttaaaagaatggacaacaatagtgaaaat
tcaaacaaatgcatggactaaagaaatcaacccaggacctaaataaaaaa
ctcaagaaagtaaatagaaattaggaagttgttggaaagaataaaaaata
tggaggaaaacatcagcaagaaacctgagatgatagaaaacaggtagcca
gacgtactggaaaaaaaaaaaagtcaacaaataaaatacaggaagcatca
tctgtagacaaaagtggacagaagaaggaatttcagacgcagagaaaatg
tcaagacaacaatacaatcagatggatgtaaggaaaaattaaaggagtat
gcccaatacttctaagatatgtagactatctctgtccttgttactttcat
tgttgaaagaacgaacaggttgggaaggaaggggtatatttcttcttaca
tttccagttaatagtctatcactgaaggaaattagggcaggaagtaagtc
aggaatctttttgttttctctttatggaaaggagaatttttttctcacgc
agtatttctcattacagtctcccatctacaatccagatcctctcatactc
tgtctctcatagaaaaaaaatagcttctagggatatatataaataaatat
aaagataatagaaaatcaagcttaatatatcgattgacaaacaacaacga
gaagcagcccagagaaggcacaaaaatcgagaccattcattgccattcaa
cattcc
gaattcatgaaagtcatcttttttttctaatttataatagctttatttcc
taatttgactggctcccctaatgtccaatttttatacagaaattcaattg
tgttgtacaattcctgaaaatatcttgccctatgaactagtaaaggtagt
ctgagaattaaaatattaaaaagaaaataaaatgatttccagttacatca
gagcctatcttataatttttcttggagaaacacactctccttttaacttc
aagaatcattctctttgacagattgtagaagagaccattttgcccaatcc
tcaccattttcccagatttgaattatcttattcttttaaaccctttaaaa
aatttaaatgtattagtgtcagctgcatttaatgtatcaagtcattttct
cttcatgtttactggtcgttacatgcatttcctttcttcctgctaacagt
ctcccttgctctctcagcctttgtgtggaatgaaaagaaaagttacaatc
tcaagaaaactatagttcagaagtcaagctggatgatttgatgagaattt
ggaagaaaggtgatagaaatatatgtagtcacctgttaagagtccagtag
ataaaaccatttttagctgattacatatgaatttgaaatactctttattt
aatctagaacttcaaagacatttaagaaaattgttgtaataaattccatg
aaatcacatgtaatacttggatgatatggatttatatgctttagaatacc
tttatgcacatgtttaatctaatatatatttatatgaatattataaaaca
cacatatttgggtgagaagcctagaataagatgactagtatcatcatatt
cagagacatctatgattcacagaattgtttaaacaaactacattatataa
agaatgcctagaaactttgagatataaaactatatgatagacctatctca
ttttctcaatgtcatctgcatattgcgtactttcatcatgataagagtat
actttaaaaatctcaaatcatttatcaagactagaaaagcatgtactgta
tcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18894299_18895492
seq2: B6Ng01-047H12.b_44_1199 (reverse)

seq1  GGAATTGTTGAATGTGCAAATGAATGGGTCTCTGATTTTTGTGCCTTCTC  50
      |||| ||||||||| || ||||||| |||||| |||||||||||||||||
seq2  GGAA-TGTTGAATG-GC-AATGAAT-GGTCTC-GATTTTTGTGCCTTCTC  45

seq1  TTGGGCTTGCTTTCTTCTGTTTGTTGGTTTTTGTCCAATTCTGATATATT  100
       |||||     | |||||  ||||||   ||||| ||||   ||||||||
seq2  -TGGGC-----TGCTTCTCGTTGTTG---TTTGT-CAAT--CGATATATT  83

seq1  -AGCTTTTGTTTTTCTTATTATCTTT-TATTTATTTTATTTTATTATTAT  148
       |||  ||| ||||| |||||||||| |||||||         ||||   
seq2  AAGC--TTGATTTTC-TATTATCTTTATATTTAT---------TTATATA  121

seq1  TATCCCTTAGAAGCCTAATTTTTTTTCTAATGAGAGACAGAGTATGAGAG  198
      |||||| |||||||   ||||||||||| |||||||||||||||||||||
seq2  TATCCC-TAGAAGC--TATTTTTTTTCT-ATGAGAGACAGAGTATGAGAG  167

seq1  GATCTGGATTGGTAGAATGGGGAGAACCTGTAAATGAGAAATACTGCGTG  248
      |||||||||| |||||   ||||||  |||| ||||||||||||||||||
seq2  GATCTGGATT-GTAGA--TGGGAGA--CTGT-AATGAGAAATACTGCGTG  211

seq1  AGAAAAAAAATTCTCCTTTCCATAAAGAGAAAAACAAAAAGATTCCTGAC  298
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AG-AAAAAAATTCTCCTTTCCATAAAGAG-AAAACAAAAAGATTCCTGAC  259

seq1  TTACTTCCTGCCCTAATTTCCTTCAGTGATAGACTATTAACTGGAAATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTGCCCTAATTTCCTTCAGTGATAGACTATTAACTGGAAATGT  309

seq1  AAGAAGAAATATACCCCTTCCTTCCCAACCTGTTCGTTCTTTCAACAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAATATACCCCTTCCTTCCCAACCTGTTCGTTCTTTCAACAATG  359

seq1  AAAGTAACAAGGACAGAGATAGTCTACATATCTTAGAAGTATTGGGCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACAAGGACAGAGATAGTCTACATATCTTAGAAGTATTGGGCATA  409

seq1  CTCC-TTAATTTTTCCTTACATCCATCTGATTGTATTGTTGTCTTGACAT  497
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAATTTTTCCTTACATCCATCTGATTGTATTGTTGTCTTGACAT  459

seq1  TTTCTCTGCGTCTGAAATTCCTTCTTCTGTCCACTTTTGTCTACAGATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGCGTCTGAAATTCCTTCTTCTGTCCACTTTTGTCTACAGATGA  509

seq1  TGCTTCCTGTATTTTATTTGTTGACTTTTTTTTTTTTCCAGTACGTCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGTATTTTATTTGTTGACTTTTTTTTTTTTCCAGTACGTCTGG  559

seq1  CTACCTGTTTTCTATCATCTCAGGTTTCTTGCTGATGTTTTCCTCCATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTTTTCTATCATCTCAGGTTTCTTGCTGATGTTTTCCTCCATAT  609

seq1  TTTTTATTCTTTCCAACAACTTCCTAATTTCTATTTACTTTCTTGAGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTTTCCAACAACTTCCTAATTTCTATTTACTTTCTTGAGTTT  659

seq1  TTTATTTAGGTCCTGGGTTGATTTCTTTAGTCCATGCATTTGTTTGAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGGTCCTGGGTTGATTTCTTTAGTCCATGCATTTGTTTGAATT  709

seq1  TTCACTATTGTTGTCCATTCTTTTAAAATAGAGGACTCTGGATTCTTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATTGTTGTCCATTCTTTTAAAATAGAGGACTCTGGATTCTTTCA  759

seq1  CACACAGATAATCTCTGTGATTTTGGCTAGTAGTGTAAGAAAGTTGATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATAATCTCTGTGATTTTGGCTAGTAGTGTAAGAAAGTTGATAG  809

seq1  GGAGTGGGTAGAGGGTAAGTGTGGCAAGGGTGGTGGTGTACAGTCATGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGTAGAGGGTAAGTGTGGCAAGGGTGGTGGTGTACAGTCATGTC  859

seq1  ACAGACTTTCTGTTTTTTTGTCACACTTTGTACTTCTGTTGGGACTGATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTTCTGTTTTTTTGTCACACTTTGTACTTCTGTTGGGACTGATT  909

seq1  TACCTTCCAGTTGAACCCCCAATGTTACCACTCTACTTAATTGCTTTGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCCAGTTGAACCCCCAATGTTACCACTCTACTTAATTGCTTTGCT  959

seq1  TCCTGTGTGTCCTCCCACAGGAACCCATGATTTCAGATTTTGTTTCCAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGTCCTCCCACAGGAACCCATGATTTCAGATTTTGTTTCCAGC  1009

seq1  TGTTATCTATGGGGGAGACACAGTGGCACTTCTGCCTCCTTACCATGAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTATGGGGGAGACACAGTGGCACTTCTGCCTCCTTACCATGAGA  1059

seq1  TTGGATTTTGACTGATAGAGACAATTTTAAATTATGCTTATGGTTCAGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTTGACTGATAGAGACAATTTTAAATTATGCTTATGGTTCAGAG  1109

seq1  AGTGGGTGGTGAAGTGCTGGTTAAAAAAGGTGTGTTTTATAGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGTGAAGTGCTGGTTAAAAAAGGTGTGTTTTATAGAATTC  1156

seq1: chr5_18718814_18719902
seq2: B6Ng01-047H12.g_66_1120

seq1  GAATTCATGAAAGTCATCTTTTTTTTCTAATTTATAATAGCTTTATTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAAGTCATCTTTTTTTTCTAATTTATAATAGCTTTATTTCC  50

seq1  TAATTTGACTGGCTCCCCTAATGTCCAATTTTTATACAGAAATTCAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGACTGGCTCCCCTAATGTCCAATTTTTATACAGAAATTCAATTG  100

seq1  TGTTGTACAATTCCTGAAAATATCTTGCCCTATGAACTAGTAAAGGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACAATTCCTGAAAATATCTTGCCCTATGAACTAGTAAAGGTAGT  150

seq1  CTGAGAATTAAAATATTAAAAAGAAAATAAAATGATTTCCAGTTACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTAAAATATTAAAAAGAAAATAAAATGATTTCCAGTTACATCA  200

seq1  GAGCCTATCTTATAATTTTTCTTGGAGAAACACACTCTCCTTTTAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATCTTATAATTTTTCTTGGAGAAACACACTCTCCTTTTAACTTC  250

seq1  AAGAATCATTCTCTTTGACAGATTGTAGAAGAGACCATTTTGCCCAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATTCTCTTTGACAGATTGTAGAAGAGACCATTTTGCCCAATCC  300

seq1  TCACCATTTTCCCAGATTTGAATTATCTTATTCTTTTAAACCCTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTTTCCCAGATTTGAATTATCTTATTCTTTTAAACCCTTTAAAA  350

seq1  AATTTAAATGTATTAGTGTCAGCTGCATTTAATGTATCAAGTCATTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATGTATTAGTGTCAGCTGCATTTAATGTATCAAGTCATTTTCT  400

seq1  CTTCATGTTTACTGGTCGTTACATGCATTTCCTTTCTTCCTGCTAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTTTACTGGTCGTTACATGCATTTCCTTTCTTCCTGCTAACAGT  450

seq1  CTCCCTTGCTCTCTCAGCCTTTGTGTGGAATGAAAAGAAAAGTTACAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGCTCTCTCAGCCTTTGTGTGGAATGAAAAGAAAAGTTACAATC  500

seq1  TCAAGAAAACTATAGTTCAGAAGTCAAGCTGGATGATTTGATGAGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAACTATAGTTCAGAAGTCAAGCTGGATGATTTGATGAGAATTT  550

seq1  GGAAGAAAGGTGATAGAAATATATGTAGTCACCTGTTAAGAGTCCAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGGTGATAGAAATATATGTAGTCACCTGTTAAGAGTCCAGTAG  600

seq1  ATAAAACCATTTTTAGCTGATTACATATGAATTTGAAATACTCTTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCATTTTTAGCTGATTACATATGAATTTGAAATACTCTTTATTT  650

seq1  AATCTAGAACTTCAAAGACATTTAAGAAAATTGTTGTAATAAATTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAACTTCAAAGACATTTAAGAAAATTGTTGTAATAAATTCCATG  700

seq1  AAATCACATGTAATACTTGGATGATATGGATTTATATGCTTTAGAATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATGTAATACTTGGATGATATGGATTTATATGCTTTAGAATACC  750

seq1  TTTATGCACATGTTTAATCTAATATATATTTATATGAATATTATAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCACATGTTTAATCTAATATATATTTATATGAATATTATAAAACA  800

seq1  CACATATTTGGGTGAGAAGCCTAGAATAAGATGACTAGTATCATCATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTTGGGTGAGAAGCCTAGAATAAGATGACTAGTATCATCATATT  850

seq1  CAGAGACATCTATGATTCACAGAATTGTTTAAACAAACTACATTATATAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGAGACATCTATGATTCACAGAATTGTTTAAACAAACTACATTATAT-A  899

seq1  AAGAATGCCTAGAAAACTTTGAAGAATATTAAAACTATTATGATTAGAAC  950
      |||||||||||| |||||||||   ||| |||||||| ||||| ||| ||
seq2  AAGAATGCCTAG-AAACTTTGA--GATA-TAAAACTA-TATGA-TAG-AC  942

seq1  CTTATTCTCATTTTCTCCAAATGTTCATCTGCATATTTGCGTACTTTCCA  1000
      ||   ||||||||||||  |||| ||||||||||| ||||||||||||  
seq2  CT--ATCTCATTTTCTC--AATG-TCATCTGCATA-TTGCGTACTTTC--  984

seq1  ATCAATTGATAAAGGAAGTAATTAACCTTTAAAAAAATTCTCAAAATACA  1050
      ||||  ||||||    ||||  ||  |||||||||   |||||||   ||
seq2  ATCA--TGATAA---GAGTA--TA--CTTTAAAAA---TCTCAAA--TCA  1020

seq1  TTTATCCAAAGACTAGAAAAGGCATGTAACTGTATCTTT  1089
      ||||||  |||||||||||| |||||| |||||||||||
seq2  TTTATC--AAGACTAGAAAA-GCATGT-ACTGTATCTTT  1055