BAC Information

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BAC

Clone NameB6Ng01-048M03
Chromosome5 (Build37)18 (Build37)
Map Location 18,084,511 - 18,084,57526,315,477 - 26,315,968
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048M03.bB6Ng01-048M03.g
ACCDH873222DH873223
length711992
definitionDH873222|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M03, 5' end.DH873223|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(26,315,477 - 26,315,968)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatatggagaaagaggaacactcttccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatatagatataatttgctaaacacatgaaactcaagg
agaatgaagactgaagtgtggacactatgcccctccttagatttgggaac
aaaacacccat
gaattcatgataaccacttggaaatacgtaaccagtcagggactcatctc
tcatgaaggcttgttctccctctctcactagtggagagttgtctgtagct
ccttgtttagaagaaaggctctgtgtcatttccccccttctgtgttatca
tgtttattggtgtcttaattgtacagattttgattaggaagccttgttgt
ttggtagcatagctttaaatcttcagttgtaaggatataatcttgaggaa
ataaccagaaatcagaagagcacaaagaacctggttaggagaggttgagg
gggactagcaggataaaatttatatgaagggaaatgggaaaaataggaag
gagatagagactaattggtgaaagtagagagccataaatatggagaaagt
ttaatggaagtaaaataagagtatattttataacttttaaaaagataata
tgacaagtcccttccgctcgactcgagactcgagccccgggctaccttgc
cagcagagtcttgcccaacacccgcaagggtccacacaggactccccacg
ggaccctaagacctctggtgagtggatcacagtgcctgccccaatccaat
cacgcggaactcgagactgcggtacatagggaagcaggctacccgggcct
gatctggggcacaagtccctttcgctcgactccagactcgagccccgggc
taccttgacagcagagtcttgcccaacacccgcaagggcccacacgggac
tcccacgggaacctaagacctctggtgagtggaacacagcgcctacccca
atccaatcgcgtggaacttgagactgcggtacataagggaagcaggctac
ctgggcttgatcctggggcacaaacccctttcactccactcgagccccgg
ctacctttgccagctgagtccgcctgaaacccgcaaggtccacacaggat
ttcacacgtgatcctagacctctgtgagtgacacacttctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-048M03.b_362_426 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      ||||||||| |||||
seq2  CTTCTTACCGGTTGG  65

seq1: chr18_26315477_26315968
seq2: B6Ng01-048M03.g_571_1058 (reverse)

seq1  GCAGAAGTTGTGTTCCACTCACTAGAGGTCTTAGGATCACATGTGGAATC  50
      ||||||| |||||  ||||||| ||||||| ||||||||| |||| ||||
seq2  GCAGAAG-TGTGT--CACTCAC-AGAGGTC-TAGGATCACGTGTGAAATC  45

seq1  CTGTGTGGGCCCTTGCGGGTGTCAGGC-GACTCAGCTGGC-AAGGTAGCC  98
      |||||| || |||||||||| |||||| |||||||||||| ||||||| |
seq2  CTGTGT-GGACCTTGCGGGTTTCAGGCGGACTCAGCTGGCAAAGGTAG-C  93

seq1  CAGGGCTCGAGTGGAGTGGAAGGGGTTTGTGCCCCA-GATCAAGCCCGGG  147
      | |||||||||||||||| ||||||||||||||||| |||||||||| ||
seq2  CGGGGCTCGAGTGGAGTGAAAGGGGTTTGTGCCCCAGGATCAAGCCCAGG  143

seq1  TAGCCTGCTTCCC-TATGTAGCGCAGTCTCAAGTTCTGCGCGATTGGATT  196
      ||||||||||||| |||||| |||||||||||||||  ||||||||||||
seq2  TAGCCTGCTTCCCTTATGTACCGCAGTCTCAAGTTCCACGCGATTGGATT  193

seq1  GGGGCAGGCGCTGTGTTCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGA  246
      |||| ||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GGGGTAGGCGCTGTGTTCCACTCACCAGAGGTCTTAGGTTCCCGT-GGGA  242

seq1  GTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGTCAAGGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGTCAAGGTA  292

seq1  GCCCGGGGCTCGAGTCTCGAGTCGAGCGGAAGGGACTTGTGCCCCAGATC  346
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  GCCCGGGGCTCGAGTCTGGAGTCGAGCGAAAGGGACTTGTGCCCCAGATC  342

seq1  AGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCGCGCG  396
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCGAGTTCCGCGTG  392

seq1  ATTGGATTGGGGCAGGCGCTGTGTTCCACTCACCAGAGGTCTTAGGGTCC  446
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  ATTGGATTGGGGCAGGCACTGTGATCCACTCACCAGAGGTCTTAGGGTCC  442

seq1  CGTGGGGAGTCCCGTGTGGGCCCTTGCAGGTGTTGGGCAAGACTCT  492
      |||||||||||| |||||| ||||||| ||||||||||||||||||
seq2  CGTGGGGAGTCCTGTGTGGACCCTTGCGGGTGTTGGGCAAGACTCT  488