BAC Information

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BAC

Clone NameB6Ng01-050C24
Chromosome5 (Build37)
Map Location 81,961,389 - 81,962,457
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050C24.bB6Ng01-050C24.g
ACCDH874212DH874213
length1,059859
definitionDH874212|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C24, 5' end.DH874213|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacctcacaaatcaatgcataaataattgtcgtcctactagtaa
atgtcatttaaaacatactgtccacttcccataacaatcaaatgctgctc
cagtctgaagatgctctgacgaggacttctggtagtcgaatgtgtgagag
acaaatggtgaatgtgtaatatagcttctatgttgacttgattaaaatat
tttctactatatattttttaacctttatttaattaaaaaattctgtgtgt
gtgtgactgtgtgtgagtgtgggaacatggcctttgtaagtcacccaaag
gccagaagaagacattagatctccttgagctggggccacaggtggttgtg
agtagtatgtgctaggttctcagaactccactaggatcctttagagcact
gacttgcaatcttcctaatgttgcaatcttcctaattttgtgacccctta
atatagttgtggtgacccctaacgataaaattattcttgttgctacttca
taaccgtaatttcgctactataatgagttgtaatgtaagtatttgtcttt
tttgttggtcttaggaaacccttgtgaaagggactttcaattttcaaagt
gaccccaacccacaggtttagaaccactgctgtacactaacagtacagtt
ttaaactctaagtcatttctccaacctttatttttatttttaaacgaaat
tacttttagaggtgaaattctatccattacagtgttatctgttgcattag
aaaataaccagtgggaagctaaattccccaagctttatcaatacttagga
tatttaattgacctgcttagccattattcatattttctttcctaaacata
tcatgggagttaagtagtcagaatttggtgcatgttcaattgctgttaca
tcttctggttggtgctgtatagtgatatggtagcttgtgcaggtttcata
atacaaatcattttgttgatctcagtgtgaggaggcattagatctgtctt
atactagcactagtaaaaatgtagtattttcgagtacttggatatggaat
ttttttata

gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tatccagtggaagaaagacagcattttcaacaattgctggcacaactggt
tgttatcgtgtagaagaatgcgaatagatccatacttatctccttgtact
aaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacact
gaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacag
gggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgaga
attgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaaga
cactgtcaataagacaaaaagaccaccaacagattgggaaaggatcttta
cctatcctaaatcagataggggactaatatccaacatatataaagaactc
aagaaggtggacagagtctttcatgtcctccatcagttcatagatgggtt
aagtcccgaccaattgcaatctctggacctgcgcctggatagtgcttgtg
ttattcctgtctcctgaaccaacactcccacgaccagctcacccaatgcc
cctgcgggaagggacaggagtaactctcctgcttttatgccctctgggca
gctacccggacccatgccaccagagccagtctactgtgctgcccacttga
ggcactgagcctcctcagcaagggctgggacagctctcgagctgccacag
atgggagggaagaaaacttcctccctcaccacaagggacggcagaaatgc
agccctctctgtacctgtctgagctggtcagccatctcggtcatgtccat
ttacacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81961389_81962457
seq2: B6Ng01-050C24.b_30_1088 (reverse)

seq1  TATAAAATAATTCCCTATCCAAGTACTCTGAAAAATACCTACATTTTTTT  50
      ||||||| |||||| |||||||||||||   |||||| |||||  |||||
seq2  TATAAAAAAATTCCATATCCAAGTACTC--GAAAATA-CTACA--TTTTT  45

seq1  ACTAGTGCTAGTATAAGACAGATCTTATTGGCTTCTTCACACTGGAGATC  100
      ||||||||||||||||||||||||| ||  || || ||||||| ||||||
seq2  ACTAGTGCTAGTATAAGACAGATCTAAT--GCCTCCTCACACT-GAGATC  92

seq1  AACAAAATGATTTGTTATTATGAAACCTGCACAAGCTACCATATCACTAT  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACAAAATGATTTG-TATTATGAAACCTGCACAAGCTACCATATCACTAT  141

seq1  ACAGCACCAACCAGAAGATGTAACAGCAATTGAACATTGCACCAAATTTC  200
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ACAGCACCAACCAGAAGATGTAACAGCAATTGAACA-TGCACCAAA-TTC  189

seq1  TGACTACTTAACTCCCATGATATGTTTAGGAAAG-AAATATGAATAATGG  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGACTACTTAACTCCCATGATATGTTTAGGAAAGAAAATATGAATAATGG  239

seq1  CTAAGCAGGTCAATTAAATATCCTAAGTATTGATAAAGCTTGGGGAATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAGGTCAATTAAATATCCTAAGTATTGATAAAGCTTGGGGAATTT  289

seq1  AGCTTCCCACTGGTTATTTTCTAATGCAACAGATAACACTGTAATGGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCACTGGTTATTTTCTAATGCAACAGATAACACTGTAATGGATA  339

seq1  GAATTTCACCTCTAAAAGTAATTTCGTTTAAAAATAAAAATAAAGGTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACCTCTAAAAGTAATTTCGTTTAAAAATAAAAATAAAGGTTGG  389

seq1  AGAAATGACTTAGAGTTTAAAACTGTACTGTTAGTGTACAGCAGTGGTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGACTTAGAGTTTAAAACTGTACTGTTAGTGTACAGCAGTGGTTC  439

seq1  TAAACCTGTGGGTTGGGGTCACTTTGAAAATTGAAAGTCCCTTTCACAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGTGGGTTGGGGTCACTTTGAAAATTGAAAGTCCCTTTCACAAG  489

seq1  GGTTTCCTAAGACCAACAAAAAAGACAAATACTTACATTACAACTCATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTAAGACCAACAAAAAAGACAAATACTTACATTACAACTCATTA  539

seq1  TAGTAGCGAAATTACGGTTATGAAGTAGCAACAAGAATAATTTTATCGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCGAAATTACGGTTATGAAGTAGCAACAAGAATAATTTTATCGTT  589

seq1  AGGGGTCACCACAACTATATTAAGGGGTCACAAAATTAGGAAGATTGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCACCACAACTATATTAAGGGGTCACAAAATTAGGAAGATTGCAA  639

seq1  CATTAGGAAGATTGCAAGTCAGTGCTCTAAAGGATCCTAGTGGAGTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAAGATTGCAAGTCAGTGCTCTAAAGGATCCTAGTGGAGTTCTG  689

seq1  AGAACCTAGCACATACTACTCACAACCACCTGTGGCCCCAGCTCAAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTAGCACATACTACTCACAACCACCTGTGGCCCCAGCTCAAGGAG  739

seq1  ATCTAATGTCTTCTTCTGGCCTTTGGGTGACTTACAAAGGCCATGTTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGTCTTCTTCTGGCCTTTGGGTGACTTACAAAGGCCATGTTCCC  789

seq1  ACACTCACACACAGTCACACACACACAGAATTTTTTAATTAAATAAAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACAGTCACACACACACAGAATTTTTTAATTAAATAAAGGT  839

seq1  TAAAAAATATATAGTAGAAAATATTTTAATCAAGTCAACATAGAAGCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATATAGTAGAAAATATTTTAATCAAGTCAACATAGAAGCTAT  889

seq1  ATTACACATTCACCATTTGTCTCTCACACATTCGACTACCAGAAGTCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACATTCACCATTTGTCTCTCACACATTCGACTACCAGAAGTCCTC  939

seq1  GTCAGAGCATCTTCAGACTGGAGCAGCATTTGATTGTTATGGGAAGTGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCATCTTCAGACTGGAGCAGCATTTGATTGTTATGGGAAGTGGA  989

seq1  CAGTATGTTTTAAATGACATTTACTAGTAGGACGACAATTATTTATGCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTTTTAAATGACATTTACTAGTAGGACGACAATTATTTATGCAT  1039

seq1  TGATTTGTGAGGTTGAATTC  1069
      ||||||||||||||||||||
seq2  TGATTTGTGAGGTTGAATTC  1059


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