BAC Information

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BAC

Clone NameB6Ng01-051A14
Chromosome5 (Build37)
Map Location 104,159,224 - 104,328,112
singlet/doubletdoublet
Overlap geneAff1, Klhl8
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik
Downstream geneHsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051A14.bB6Ng01-051A14.g
ACCDH874798DH874799
length9551,004
definitionDH874798|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A14, 5' end.DH874799|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,327,157 - 104,328,112)(104,159,224 - 104,160,223)
sequence
gaattctttgtttagctctgagccccattttttaatcgggttatttgatt
ttctggagtccaccttcttgagttctttgtatatattggatattagtccc
ctatctgaaaaaatatggaacgcttcacggatttgcgtgtcatccttctg
caagggccatgctaatcttctctgtattgttccaattttagtatatgtgc
tgccgaagcgagcacacacttaagttctttagacagattcaaggatatat
tttcctaacttttgccttcctgagacaaatctgagacgagtttcttcctg
gagtgtaggccagatgtggaacattgttaaaagcaccactgaacatggct
aaaactcagtattgatattaagaaaaagtttttctgtaggtactcctcct
gaagtttgttattttataagtgaaaatgtttggaatgggatgattggagg
tcttaattggtagctgctagactcttttccccagagaaagaaaacaggca
cactggcagctggacagcctttatgtcactttgaatgttccttggaacct
ctgaggaatttacacaacaatcgaagccacttgctgctgagacccagctt
ggcctctaaagaggtggctccagcaagacttaaaaaaaaaaaacccaact
tactccagaccttgcatgcaaacatttcctggctggagagggagcctttt
cccctggaggcctattagggagattgtgcataagggacaaccagagttgg
tataagcacaattgatcattttgcatgaaggtctgaaatgattggtgcaa
acacctttttctgtttccgtaaagccggttatagtacctacatggtgtac
agaatggaaataccttcctggttgccttctctggtcttcagatattatgt
tcaattaaaagaatctccccagtgttattttttgtgtgtgtgttgttgtt
gttgt
gaattctgctgtcaggaatagttatgttttctttctttccttttcctttt
ctttctttatttaatgtacatgagtacactgtagctgtctttaaacacac
cagaagagggcatcggattccattacaggtgcttgtgagccaccatgtgg
ttgctgggaattgaactgaggatgtctggaagagcagtcactgcttttaa
cctctgagccatctctccagccctccctttattgttgttgctaatttttt
tttcttgtttactcatttatagacaggatcccatgtagcccaggatggtc
ccaaactttgccaaagttgacctttaattcctattcccctttgcttcttc
cttccaagtgctcagattacaggtgtccaccgtgcaacccccccccttta
ttttttaaaatgcctggatttagaagatgtcaagatataaatgggcattc
cttcatagtacgttgtagaatttttatagtcatccttactgagatatggt
gttttctttacactcagttcctatgacgggcaaggatcttaggaacagaa
ctttggtgacctttcagagggctttatactgagggaggtgggaatgaact
actcttgttaaaacaagctggccagtgggtggtaggtaagctaccgggag
agatttatgagcaacatcctgttctggaatcatttgctggggacagcaga
gggggagcaactgctacattaatcaggaaggcagctctggaatggatgtc
ggccactggagaatctgaggttgatcccccctggtggttggtagtctgtg
taccacatggctgaggacacactttgggtccagctcttgagtccacacag
gtgtttggtgctggttaggtgggttccatttccctaaggagaaaacagag
ctgagtaagataaagacagatgctactgtggtcagtagccagatatagtc
ttatatttgcttccagatttgttaaagaaaaagagaggtgagccatttgg
gagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104327157_104328112
seq2: B6Ng01-051A14.b_44_998 (reverse)

seq1  ACAACAACAACAACAACACACACAAAAAATAACACTGGGGAGATTCTTTT  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACAAC-ACACACACAAAAAATAACACTGGGGAGATTCTTTT  49

seq1  AATTGAACATAATATCTGAAGACCAGAGAAGGCAACCAGGAAGGTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACATAATATCTGAAGACCAGAGAAGGCAACCAGGAAGGTATTTC  99

seq1  CATTCTGTACACCATGTAGGTACTATAACCGGCTTTACGGAAACAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTACACCATGTAGGTACTATAACCGGCTTTACGGAAACAGAAAA  149

seq1  AGGTGTTTGCACCAATCATTTCAGACCTTCATGCAAAATGATCAATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTGCACCAATCATTTCAGACCTTCATGCAAAATGATCAATTGTG  199

seq1  CTTATACCAACTCTGGTTGTCCCTTATGCACAATCTCCCTAATAGGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCAACTCTGGTTGTCCCTTATGCACAATCTCCCTAATAGGCCTC  249

seq1  CAGGGGAAAAGGCTCCCTCTCCAGCCAGGAAATGTTTGCATGCAAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAAAGGCTCCCTCTCCAGCCAGGAAATGTTTGCATGCAAGGTCT  299

seq1  GGAGTAAGTTGGGTTTTTTTTTTTTAAGTCTTGCTGGAGCCACCTCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGTTGGGTTTTTTTTTTTTAAGTCTTGCTGGAGCCACCTCTTTA  349

seq1  GAGGCCAAGCTGGGTCTCAGCAGCAAGTGGCTTCGATTGTTGTGTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAAGCTGGGTCTCAGCAGCAAGTGGCTTCGATTGTTGTGTAAATT  399

seq1  CCTCAGAGGTTCCAAGGAACATTCAAAGTGACATAAAGGCTGTCCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGGTTCCAAGGAACATTCAAAGTGACATAAAGGCTGTCCAGCTG  449

seq1  CCAGTGTGCCTGTTTTCTTTCTCTGGGGAAAAGAGTCTAGCAGCTACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCCTGTTTTCTTTCTCTGGGGAAAAGAGTCTAGCAGCTACCAA  499

seq1  TTAAGACCTCCAATCATCCCATTCCAAACATTTTCACTTATAAAATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACCTCCAATCATCCCATTCCAAACATTTTCACTTATAAAATAACA  549

seq1  AACTTCAGGAGGAGTACCTACAGAAAAACTTTTTCTTAATATCAATACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGGAGGAGTACCTACAGAAAAACTTTTTCTTAATATCAATACTG  599

seq1  AGTTTTAGCCATGTTCAGTGGTGCTTTTAACAATGTTCCACATCTGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGCCATGTTCAGTGGTGCTTTTAACAATGTTCCACATCTGGCCT  649

seq1  ACACTCCAGGAAGAAACTCGTCTCAGATTTGTCTCAGGAAGGCAAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCAGGAAGAAACTCGTCTCAGATTTGTCTCAGGAAGGCAAAAGTT  699

seq1  AGGAAAATATATCCTTGAATCTGTCTAAAGAACTTAAGTGTGTGCTCGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATATATCCTTGAATCTGTCTAAAGAACTTAAGTGTGTGCTCGCT  749

seq1  TCGGCAGCACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGCACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGG  799

seq1  CCCTTGCAGAAGGATGACACGCAAATCCGTGAAGCGTTCCATATTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCAGAAGGATGACACGCAAATCCGTGAAGCGTTCCATATTTTTTC  849

seq1  AGATAGGGGACTAATATCCAATATATACAAAGAACTCAAGAAGGTGGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGGGACTAATATCCAATATATACAAAGAACTCAAGAAGGTGGACT  899

seq1  CCAGAAAATCAAATAACCCGATTAAAAAATGGGGCTCAGAGCTAAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATCAAATAACCCGATTAAAAAATGGGGCTCAGAGCTAAACAAA  949

seq1  GAATTC  956
      ||||||
seq2  GAATTC  955

seq1: chr5_104159224_104160223
seq2: B6Ng01-051A14.g_68_1071

seq1  GAATTCTGCTGTCAGGAATAGTTATGTTTTCTTTCTTTCCTTTTCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGTCAGGAATAGTTATGTTTTCTTTCTTTCCTTTTCCTTTT  50

seq1  CTTTCTTTATTTAATGTACATGAGTACACTGTAGCTGTCTTTAAACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTATTTAATGTACATGAGTACACTGTAGCTGTCTTTAAACACAC  100

seq1  CAGAAGAGGGCATCGGATTCCATTACAGGTGCTTGTGAGCCACCATGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGCATCGGATTCCATTACAGGTGCTTGTGAGCCACCATGTGG  150

seq1  TTGCTGGGAATTGAACTGAGGATGTCTGGAAGAGCAGTCACTGCTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGAATTGAACTGAGGATGTCTGGAAGAGCAGTCACTGCTTTTAA  200

seq1  CCTCTGAGCCATCTCTCCAGCCCTCCCTTTATTGTTGTTGCTAATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGCCATCTCTCCAGCCCTCCCTTTATTGTTGTTGCTAATTTTTT  250

seq1  TTTCTTGTTTACTCATTTATAGACAGGATCCCATGTAGCCCAGGATGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTACTCATTTATAGACAGGATCCCATGTAGCCCAGGATGGTC  300

seq1  CCAAACTTTGCCAAAGTTGACCTTTAATTCCTATTCCCCTTTGCTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTTGCCAAAGTTGACCTTTAATTCCTATTCCCCTTTGCTTCTTC  350

seq1  CTTCCAAGTGCTCAGATTACAGGTGTCCACCGTGCAACCCCCCCCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGTGCTCAGATTACAGGTGTCCACCGTGCAACCCCCCCCCTTTA  400

seq1  TTTTTTAAAATGCCTGGATTTAGAAGATGTCAAGATATAAATGGGCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAATGCCTGGATTTAGAAGATGTCAAGATATAAATGGGCATTC  450

seq1  CTTCATAGTACGTTGTAGAATTTTTATAGTCATCCTTACTGAGATATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGTACGTTGTAGAATTTTTATAGTCATCCTTACTGAGATATGGT  500

seq1  GTTTTCTTTACACTCAGTTCCTATGACGGGCAAGGATCTTAGGAACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTACACTCAGTTCCTATGACGGGCAAGGATCTTAGGAACAGAA  550

seq1  CTTTGGTGACCTTTCAGAGGGCTTTATACTGAGGGAGGTGGGAATGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGACCTTTCAGAGGGCTTTATACTGAGGGAGGTGGGAATGAACT  600

seq1  ACTCTTGTTAAAACAAGCTGGCCAGTGGGTGGTAGGTAAGCTACCGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTTAAAACAAGCTGGCCAGTGGGTGGTAGGTAAGCTACCGGGAG  650

seq1  AGATTTATGAGCAACATCCTGTTCTGGAATCA-TTGCTGGGGACAGCAGA  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGATTTATGAGCAACATCCTGTTCTGGAATCATTTGCTGGGGACAGCAGA  700

seq1  GGGGGAGCAACTGCTACATTAATCAGGAAGGCAGCTCTGGAATGGATGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGCAACTGCTACATTAATCAGGAAGGCAGCTCTGGAATGGATGTC  750

seq1  GGCCACTGGAGAATCTGAGGTTGATCCCCCCTGGTGGTTGGTAGTCTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGGAGAATCTGAGGTTGATCCCCCCTGGTGGTTGGTAGTCTGTG  800

seq1  TACCACATGGCTGAGGACACACTTTGGGTCCAGCTCTTGAGTCCACACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATGGCTGAGGACACACTTTGGGTCCAGCTCTTGAGTCCACACAG  850

seq1  GTG-TTGGTGCTGGTTAGGTGGG-TCCATTTCCCTAAGGAGAAAACAGAG  897
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTTTGGTGCTGGTTAGGTGGGTTCCATTTCCCTAAGGAGAAAACAGAG  900

seq1  CTGAGTAAGATAAAGACAGATGCTACTGTGGCCAG-AGCCAGAGTATAGT  946
      ||||||||||||||||||||||||||||||| ||| ||||||| ||||||
seq2  CTGAGTAAGATAAAGACAGATGCTACTGTGGTCAGTAGCCAGA-TATAGT  949

seq1  CTTATAATTGCTTCCAGAATTG-TAAAGAAAAAGAGAGGTGAGCCATTTG  995
      |||||| ||||||||||| ||| |||||||||||||||||||||||||||
seq2  CTTATATTTGCTTCCAGATTTGTTAAAGAAAAAGAGAGGTGAGCCATTTG  999

seq1  GGAGG  1000
      |||||
seq2  GGAGG  1004