BAC Information

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BAC

Clone NameB6Ng01-051C13
Chromosome5 (Build37)
Map Location 70,449,780 - 70,603,140
singlet/doubletdoublet
Overlap genenone
Upstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2, LOC635092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051C13.bB6Ng01-051C13.g
ACCDH874884DH874885
length9211,098
definitionDH874884|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C13, 5' end.DH874885|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,449,780 - 70,450,701)(70,602,033 - 70,603,140)
sequence
gaattctcaactgaggaatactgaatggcttagaagcacctaaaaacatg
ttcaacattctcaattatcagagaaatgtaaatcaaaacaaccctgagat
tccacctcacaccagtcagagtggctaagatcaaaaactcaggtgatagt
agatgctggcaagaatgtggagaaagaggaacagtcctccatgtggagaa
agaggagcatcccacagatgctggtgggattgctagctggtacaaccact
cttgaaagaacacttttaatattctaataagatacatcaataccatagga
cagtgataattttttactaatcattaaaattatatcgcaaatcagtttat
gttgtcatgtggtagctactacacacaaagcttaattatatttcatataa
aaatctccctggtaaataaggtagcattcactaggtaataatttccaaca
aaattatccgtttaaccaagtataataaattatgttttctttagaactta
ttttagtaagtaataaaaatttagcttgatgcagtttaatgatgttaacc
ctttattagagaagacatttaattatgagattatatgttttcacatcact
tacactgcttgttcatctgttcatgtgcttttacagaataattagctgtg
gtgatgctggatccttaatatgttaggcgtatttctccattgtttagcac
aataggccttattccagcatatagtagtaatatgtagatttttgctaatt
gatttttctcatttctgttaccaagctcctgacaacttctcagaaggaga
aacattcatcttcatttaagaattgtggagaaaattctatcattgtgggg
aagttactgtgttatacaactacatgcagtaaagacatgtgactgggacc
cctcaacagtcatatgtacac
gaattccatagaagtttggggaaggaaaactctattcaaaatatgtttta
taaaaatattttttcaatagaagaaaaatgaaaaaattaagcagtttggg
aaaaagaagttaggaaagtatttctgaacattgctgacatagccataggt
ctattgctgaatcaaaatggagaagcatatatatatagtccatgtgataa
ttagctaacctactcagtggttgatctagtgtttgtagagaaaactgcaa
caagagtacttcctgtagctattccaaaaaggaatgttaactttaggcta
agcagcctattggttttcaccataagaaaggtaaagaaagacttcaggaa
aagtcttgaaaatgctttccagtggtacttataatgaatatttatcatac
ttagtacatatctgtaagattttttttttttttgtcaagagcattactca
gaatgctatgatgccatgattattaggggcactattaaatacctatttga
ccagagctatgccatacagaaaaatgaaaaaaaaaagaagaagaaaaaga
ttgaaaatatgtaagatatcataaagacaatgatatatccaatgagtaga
tatattgaaaaaaaggagaacaaaggaaacatgcactagaccactttgaa
tacagcgtataaaacatgggaaaggatgggattcacctatgcaaacttct
gaggacactgcttaggagaaattttctttcatttcattctcaaatggtat
atttaaatacttttattctgggtctgagatgattcagtggttaaagggct
atccatgaactcatgaaaaacaaggttcagaaccctgaatcccaaataaa
gccaggcatgctgagaggtgcacagaggagaattctcagagcaagaggga
taggtaacatggtttaaatggtggtgaccacaagagatcgtgtttcaaat
tgaaaggaaatataacacatgaagatatcttctgactaccatgtgtgtgt
tgtgatataaatatactttcacataatacatgttgcatcacaacatacac
gcacaaccctcaaaccacacatacccccatttgttacagctggctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70449780_70450701
seq2: B6Ng01-051C13.b_47_967

seq1  GAATTCTCAACTGAGGAATACTGAATGGCTTAGAAGCACCTAAAAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAATACTGAATGGCTTAGAAGCACCTAAAAACATG  50

seq1  TTCAACATTCTCAATTATCAGAGAAATGTAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTCTCAATTATCAGAGAAATGTAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAGTGGCTAAGATCAAAAACTCAGGTGATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAGTGGCTAAGATCAAAAACTCAGGTGATAGT  150

seq1  AGATGCTGGCAAGAATGTGGAGAAAGAGGAACAGTCCTCCATGTGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCAAGAATGTGGAGAAAGAGGAACAGTCCTCCATGTGGAGAA  200

seq1  AGAGGAGCATCCCACAGATGCTGGTGGGATTGCTAGCTGGTACAACCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCATCCCACAGATGCTGGTGGGATTGCTAGCTGGTACAACCACT  250

seq1  CTTGAAAGAACACTTTTAATATTCTAATAAGATACATCAATACCATAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGAACACTTTTAATATTCTAATAAGATACATCAATACCATAGGA  300

seq1  CAGTGATAATTTTTTACTAATCATTAAAATTATATCGCAAATCAGTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATAATTTTTTACTAATCATTAAAATTATATCGCAAATCAGTTTAT  350

seq1  GTTGTCATGTGGTAGCTACTACACACAAAGCTTAATTATATTTCATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATGTGGTAGCTACTACACACAAAGCTTAATTATATTTCATATAA  400

seq1  AAATCTCCCTGGTAAATAAGGTAGCATTCACTAGGTAATAATTTCCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCCTGGTAAATAAGGTAGCATTCACTAGGTAATAATTTCCAACA  450

seq1  AAATTATCCGTTTAACCAAGTATAATAAATTATGTTTTCTTTAGAACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCCGTTTAACCAAGTATAATAAATTATGTTTTCTTTAGAACTTA  500

seq1  TTTTAGTAAGTAATAAAAATTTAGCTTGATGCAGTTTAATGATGTTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTAAGTAATAAAAATTTAGCTTGATGCAGTTTAATGATGTTAACC  550

seq1  CTTTATTAGAGAAGACATTTAATTATGAGATTATATGTTTTCACATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAGAGAAGACATTTAATTATGAGATTATATGTTTTCACATCACT  600

seq1  TACACTGCTTGTTCATCTGTTCATGTGCTTTTACAGAATAATTAGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCTTGTTCATCTGTTCATGTGCTTTTACAGAATAATTAGCTGTG  650

seq1  GTGATGCTGGATCCTTAATATGTTAGGCGTATTTCTCCATTGTTTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTGGATCCTTAATATGTTAGGCGTATTTCTCCATTGTTTAGCAC  700

seq1  AATAGGCCTTATTCCAGCATATAGTAGTAATATGTAGATTTTTGCTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCCTTATTCCAGCATATAGTAGTAATATGTAGATTTTTGCTAATT  750

seq1  GATTTTTCTCATTTCTGTTACCAAGCTCCTGACAACTTCTCAGAAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTCATTTCTGTTACCAAGCTCCTGACAACTTCTCAGAAGGAGA  800

seq1  AACATTCATCTTCATTTAAGAATTGTGGAGAAAATTCTATCATTGTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCATCTTCATTTAAGAATTGTGGAGAAAATTCTATCATTGTGGGG  850

seq1  AAGTTACTGTTGTTATACAACTACATGCAGTAAAGACATGTGACTGGGAC  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTG-TGTTATACAACTACATGCAGTAAAGACATGTGACTGGGAC  899

seq1  CCCTCAACAGTCATATGTACAC  922
      ||||||||||||||||||||||
seq2  CCCTCAACAGTCATATGTACAC  921

seq1: chr5_70602033_70603140
seq2: B6Ng01-051C13.g_69_1166 (reverse)

seq1  AATAGCCAAGACTGTAACAAAATTGTGTGTATGTGTGTGTTTGTGTGTTT  50
      ||||||||   ||||||||||  || | ||||||||| ||||| | | ||
seq2  AATAGCCA--GCTGTAACAAA--TGGGGGTATGTGTG-GTTTGAG-GGTT  44

seq1  GTGCGTGTATGTGTGTGATGCATACATGTATTATGTGAAGGTATATTTAT  100
      |||||||||||| ||||||||| |||||||||||||||| ||||||||||
seq2  GTGCGTGTATGT-TGTGATGCA-ACATGTATTATGTGAAAGTATATTTAT  92

seq1  ATCACAACACACACATGGTAGTCAGAAGATATCTTCATGTGTTATATTTT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCACAACACACACATGGTAGTCAGAAGATATCTTCATGTGTTATA-TTT  141

seq1  CCTTTCAATTTGAAACACGATCTCTTGTTGGTCACCACCATTTAAACCAT  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTTTCAATTTGAAACACGATCTCTTG-TGGTCACCACCATTTAAACCAT  190

seq1  GTTACCTATCCCTCTTGCTCTGAGAATTCTCCTCTGTGCACCTCTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTATCCCTCTTGCTCTGAGAATTCTCCTCTGTGCACCTCTCAGCA  240

seq1  TGCCTGGCTTTATTTGGGATTCAGGGTTCTGAACCTTGTTTTTCATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTTTATTTGGGATTCAGGGTTCTGAACCTTGTTTTTCATGAGT  290

seq1  TCATGGATAGCCCTTTAACCACTGAATCATCTCAGACCCAGAATAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATAGCCCTTTAACCACTGAATCATCTCAGACCCAGAATAAAAGT  340

seq1  ATTTAAATATACCATTTGAGAATGAAATGAAAGAAAATTTCTCCTAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATATACCATTTGAGAATGAAATGAAAGAAAATTTCTCCTAAGCA  390

seq1  GTGTCCTCAGAAGTTTGCATAGGTGAATCCCATCCTTTCCCATGTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCAGAAGTTTGCATAGGTGAATCCCATCCTTTCCCATGTTTTAT  440

seq1  ACGCTGTATTCAAAGTGGTCTAGTGCATGTTTCCTTTGTTCTCCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTATTCAAAGTGGTCTAGTGCATGTTTCCTTTGTTCTCCTTTTTT  490

seq1  TCAATATATCTACTCATTGGATATATCATTGTCTTTATGATATCTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATCTACTCATTGGATATATCATTGTCTTTATGATATCTTACAT  540

seq1  ATTTTCAATCTTTTTCTTCTTCTTTTTTTTTTCATTTTTCTGTATGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATCTTTTTCTTCTTCTTTTTTTTTTCATTTTTCTGTATGGCAT  590

seq1  AGCTCTGGTCAAATAGGTATTTAATAGTGCCCCTAATAATCATGGCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTCAAATAGGTATTTAATAGTGCCCCTAATAATCATGGCATCA  640

seq1  TAGCATTCTGAGTAATGCTCTTGACAAAAAAAAAAAAAATCTTACAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCTGAGTAATGCTCTTGACAAAAAAAAAAAAAATCTTACAGATA  690

seq1  TGTACTAAGTATGATAAATATTCATTATAAGTACCACTGGAAAGCATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAAGTATGATAAATATTCATTATAAGTACCACTGGAAAGCATTTT  740

seq1  CAAGACTTTTCCTGAAGTCTTTCTTTACCTTTCTTATGGTGAAAACCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTTTTCCTGAAGTCTTTCTTTACCTTTCTTATGGTGAAAACCAAT  790

seq1  AGGCTGCTTAGCCTAAAGTTAACATTCCTTTTTGGAATAGCTACAGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTTAGCCTAAAGTTAACATTCCTTTTTGGAATAGCTACAGGAAG  840

seq1  TACTCTTGTTGCAGTTTTCTCTACAAACACTAGATCAACCACTGAGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGTTGCAGTTTTCTCTACAAACACTAGATCAACCACTGAGTAGG  890

seq1  TTAGCTAATTATCACATGGACTATATATATATGCTTCTCCATTTTGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAATTATCACATGGACTATATATATATGCTTCTCCATTTTGATTC  940

seq1  AGCAATAGACCTATGGCTATGTCAGCAATGTTCAGAAATACTTTCCTAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGACCTATGGCTATGTCAGCAATGTTCAGAAATACTTTCCTAAC  990

seq1  TTCTTTTTCCCAAACTGCTTAATTTTTTCATTTTTCTTCTATTGAAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCCCAAACTGCTTAATTTTTTCATTTTTCTTCTATTGAAAAAA  1040

seq1  TATTTTTATAAAACATATTTTGAATAGAGTTTTCCTTCCCCAAACTTCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATAAAACATATTTTGAATAGAGTTTTCCTTCCCCAAACTTCTA  1090

seq1  TGGAATTC  1108
      ||||||||
seq2  TGGAATTC  1098