BAC Information

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BAC

Clone NameB6Ng01-051E14
Chromosome5 (Build37)
Map Location 16,987,035 - 17,166,240
singlet/doubletdoublet
Overlap geneEG630927, Sema3c
Upstream geneLOC668121, Hgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051E14.bB6Ng01-051E14.g
ACCDH874974DH874975
length9741,143
definitionDH874974|Mus musculus domesticus DNA, BAC clone: B6Ng01-051E14, 5' end.DH874975|Mus musculus domesticus DNA, BAC clone: B6Ng01-051E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,987,035 - 16,987,775)(17,165,088 - 17,166,240)
sequence
gaattctcttacttctaacatatagcactctgtaacacacattcattcat
gatcctgtggaccaggttctgagtaatatacaatcattgttctagagatg
ctgaggatttaaaaacactcagaaaagaatataaaataaatcaggaaggc
cagagccatatgcctcagttttacttgcaatacagcatcaatgataacga
cccagcagatataatgaccttccatgtcttgctggcaaatagcttttttt
tttctttttattaggtattttcttcattgattattttccaatgctatccc
caaatcccccataacccccccccccgcactcccctaccaacccactacca
cttcttgggcctggcattcccctgtactaagtcatataaagtttgcaaga
ccaatgggcctctctttcttttgatggccaaaagggccattttctgatac
atatgcagctagagacatgagctctgggggttactggttagttcatattg
ttgttcgacctataggattgaagacccctctagctccttgggtactttct
ctagctcctccattggaggacctgtgatccatccagtagctgactctgag
catccacttctgtgtttgctaggccccggcatagcctcacaagagacagc
tatatctgggtcctttcagcaaaattttgctagtgtatgcaatggtgtca
acgttttggaggctgattatgggatgtattcccgggtatggcagtctcta
gatggtccatctttttcctctgagctccaaactttgtctctgtaattcct
tccacgggtgttttgttcccaattctaagaatgggcaaagtgtccacact
ttggtcttcattcttcttgagtttcatgtgctttgaaattgtatcttgta
tcttgggtattctaagttttctgggctatatccacttaacagtgagtact
atcatttaagttcttttgtgattg
gaattctctatacattaacttccaacaagacatacttcagtgaaaactta
gaaaggggagtttctggctggtttgccttgagctctgtagacaactgact
tggataaatcgttgctatagtaaaaggaaaaaggtcaacaatatatttta
tattttcattcatagaactatacttatttcgtcctacgtatatgtctatt
tattatcgataatactttctttcttttgtgatagaaggcatgggagtaat
tatttcctctattttactattatgatttcccagaacactcaacgtttcac
cttataacagacatgtattgagcatttcatatagttttcttaaggagttt
tcatgattctttattttttttctctttgcatctcagtttccttagaaaaa
taaaccaaagatactttgattgcctttattcatatagatagctacagtaa
gaaaggtttcaaacacatgtataataattaatccatgcctttacccatct
tatcatatatcacagattaagaacccacattttaattttacagttatcaa
tactaatgcaaccttagcatttttatattattaacatttttaggctcctt
tatccacatactttgattgcatttagtctcacagcaatgcttcaattaag
tagctggatttcaatttactaataaagaagtttatctccaaaagagatta
aatggagtcttccccttggactgggactctggctactactattgtccata
ttttctccagcatttttactatcagcagacaaatttctactatgtgatac
tcagtgcacctcccccctcctcctctagaaaatactcaagtgatgctgaa
caggtgaggcaatcttgatagctctgctcttcccttgtacagcatcattt
tctgaccttatcaattctgacataaactgctgtgtaaatccttttcagca
aatatttttatgacactgtatttagggttaggacccttgaatgcctagtc
tactttctgccttcaacaaagaggaaaatatttcattctgtggtaagacc
cacgaagtttcaaagggttctattactatgcatcatggcataaatacatt
caatatgaacctagtataatgcttagaataatatatttcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16987035_16987775
seq2: B6Ng01-051E14.b_46_787

seq1  GAATTCTCTTACTTCTAACATATAGCACTCTGTAACACACATTCATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACTTCTAACATATAGCACTCTGTAACACACATTCATTCAT  50

seq1  GATCCTGTGGACCAGGTTCTGAGTAATATACAATCATTGTTCTAGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTGGACCAGGTTCTGAGTAATATACAATCATTGTTCTAGAGATG  100

seq1  CTGAGGATTTAAAAACACTCAGAAAAGAATATAAAATAAATCAGGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATTTAAAAACACTCAGAAAAGAATATAAAATAAATCAGGAAGGC  150

seq1  CAGAGCCATATGCCTCAGTTTTACTTGCAATACAGCATCAATGATAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCATATGCCTCAGTTTTACTTGCAATACAGCATCAATGATAACGA  200

seq1  CCCAGCAGATATAATGACCTTCCATGTCTTGCTGGCAAATAGCTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGATATAATGACCTTCCATGTCTTGCTGGCAAATAGCTTTTTTT  250

seq1  TTTCTTTTTATTAGGTATTTTCTTCATTGATTATTTTCCAATGCTATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTATTAGGTATTTTCTTCATTGATTATTTTCCAATGCTATCCC  300

seq1  CAAATCCCCCATAACCCCCCCCCCCGCACTCCCCTACCAACCCACTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCCCATAACCCCCCCCCCCGCACTCCCCTACCAACCCACTACCA  350

seq1  CTTCTTGGGCCTGGCATTCCCCTGTACTAAGTCATATAAAGTTTGCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGGCCTGGCATTCCCCTGTACTAAGTCATATAAAGTTTGCAAGA  400

seq1  CCAATGGGCCTCTCTTTCTTTTGATGGCCAAAAGGGCCATTTTCTGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCTTTTGATGGCCAAAAGGGCCATTTTCTGATAC  450

seq1  ATATGCAGCTAGAGACATGAGCTCTGGGGGTTACTGGTTAGTTCATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGCTAGAGACATGAGCTCTGGGGGTTACTGGTTAGTTCATATTG  500

seq1  TTGTTCGACCTATAGGATTGAAGACCCCTCTAGCTCCTTGGGTACTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGACCTATAGGATTGAAGACCCCTCTAGCTCCTTGGGTACTTTCT  550

seq1  CTAGCTCCTCCATTGGAGGACCTGTGATCCATCCAGTAGCTGACTCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTCCATTGGAGGACCTGTGATCCATCCAGTAGCTGACTCTGAG  600

seq1  CATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGCCTCACAAGAGACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGCCTCACAAGAGACAGC  650

seq1  TATATCTGGGTCCTTTCAGCAAAATTTTGCTAGTGTATGCAATGGTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGGGTCCTTTCAGCAAAATTTTGCTAGTGTATGCAATGGTGTCA  700

seq1  ACG-TTTGGAGGCTGATTATGGGATGTATTCCCGGGTATGGC  741
      ||| ||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTGGAGGCTGATTATGGGATGTATTCCCGGGTATGGC  742

seq1: chr5_17165088_17166240
seq2: B6Ng01-051E14.g_65_1207 (reverse)

seq1  AGATGAAATTATATTTATTCTAAAGCTTTATACTAAGTTCATATATGAAT  50
      |||||||| |||| ||||||| |||| |||||||| |||||||| |||||
seq2  AGATGAAA-TATA-TTATTCT-AAGCATTATACTAGGTTCATAT-TGAAT  46

seq1  GTATTTATG-CATGTATGCACTAGT-ATAGAACCCTATGAAAACTTCGTG  98
      ||||||||| |||| ||||| |||| |||||||||| || ||||||||||
seq2  GTATTTATGCCATG-ATGCA-TAGTAATAGAACCCTTTG-AAACTTCGTG  93

seq1  GGTCTTACCACAGGATTGATATATTCTCCTCTTTGTTTGAAGGCAGAAAG  148
      |||||||||||| || ||| ||||| ||||||||| ||||||||||||||
seq2  GGTCTTACCACA-GAATGAAATATTTTCCTCTTTG-TTGAAGGCAGAAAG  141

seq1  TAGACTAGGCATTCAAGTGTTCCTAACCCTAAATACAGTGTCATAATAAA  198
      ||||||||||||||||| | |||||||||||||||||||||||||| |||
seq2  TAGACTAGGCATTCAAG-GGTCCTAACCCTAAATACAGTGTCATAA-AAA  189

seq1  TATTTGCTGAAAAGGATTTTACACAGCAGTTTATGTCAGAATTGATAAGG  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATTTGCTGAAAAGGA-TTTACACAGCAGTTTATGTCAGAATTGATAAGG  238

seq1  TCAGAAAATGATGCTGTACAAGGGAAGAGCAGAGCTATCAAGATTGCCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATGATGCTGTACAAGGGAAGAGCAGAGCTATCAAGATTGCCTC  288

seq1  ACCTGTTCAGCATCACTTGAGTATTTTCTAGAGGAGGAGGGGGGAGGTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCAGCATCACTTGAGTATTTTCTAGAGGAGGAGGGGGGAGGTGC  338

seq1  ACTGAGTATCACATAGTAGAAATTTGTCTGCTGATAGTAAAAATGCTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTATCACATAGTAGAAATTTGTCTGCTGATAGTAAAAATGCTGGA  388

seq1  GAAAATATGGACAATAGTAGTAGCCAGAGTCCCAGTCCAAGGGGAAGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGGACAATAGTAGTAGCCAGAGTCCCAGTCCAAGGGGAAGACT  438

seq1  CCATTTAATCTCTTTTGGAGATAAACTTCTTTATTAGTAAATTGAAATCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAATCTCTTTTGGAGATAAACTTCTTTATTAGTAAATTGAAATCC  488

seq1  AGCTACTTAATTGAAGCATTGCTGTGAGACTAAATGCAATCAAAGTATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTAATTGAAGCATTGCTGTGAGACTAAATGCAATCAAAGTATGT  538

seq1  GGATAAAGGAGCCTAAAAATGTTAATAATATAAAAATGCTAAGGTTGCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGGAGCCTAAAAATGTTAATAATATAAAAATGCTAAGGTTGCAT  588

seq1  TAGTATTGATAACTGTAAAATTAAAATGTGGGTTCTTAATCTGTGATATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTGATAACTGTAAAATTAAAATGTGGGTTCTTAATCTGTGATATA  638

seq1  TGATAAGATGGGTAAAGGCATGGATTAATTATTATACATGTGTTTGAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGATGGGTAAAGGCATGGATTAATTATTATACATGTGTTTGAAAC  688

seq1  CTTTCTTACTGTAGCTATCTATATGAATAAAGGCAATCAAAGTATCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACTGTAGCTATCTATATGAATAAAGGCAATCAAAGTATCTTTG  738

seq1  GTTTATTTTTCTAAGGAAACTGAGATGCAAAGAGAAAAAAAATAAAGAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTTCTAAGGAAACTGAGATGCAAAGAGAAAAAAAATAAAGAAT  788

seq1  CATGAAAACTCCTTAAGAAAACTATATGAAATGCTCAATACATGTCTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACTCCTTAAGAAAACTATATGAAATGCTCAATACATGTCTGTT  838

seq1  ATAAGGTGAAACGTTGAGTGTTCTGGGAAATCATAATAGTAAAATAGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTGAAACGTTGAGTGTTCTGGGAAATCATAATAGTAAAATAGAGG  888

seq1  AAATAATTACTCCCATGCCTTCTATCACAAAAGAAAGAAAGTATTATCGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTACTCCCATGCCTTCTATCACAAAAGAAAGAAAGTATTATCGA  938

seq1  TAATAAATAGACATATACGTAGGACGAAATAAGTATAGTTCTATGAATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATAGACATATACGTAGGACGAAATAAGTATAGTTCTATGAATGA  988

seq1  AAATATAAAATATATTGTTGACCTTTTTCCTTTTACTATAGCAACGATTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAATATATTGTTGACCTTTTTCCTTTTACTATAGCAACGATTT  1038

seq1  ATCCAAGTCAGTTGTCTACAGAGCTCAAGGCAAACCAGCCAGAAACTCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTCAGTTGTCTACAGAGCTCAAGGCAAACCAGCCAGAAACTCCC  1088

seq1  CTTTCTAAGTTTTCACTGAAGTATGTCTTGTTGGAAGTTAATGTATAGAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAGTTTTCACTGAAGTATGTCTTGTTGGAAGTTAATGTATAGAG  1138

seq1  AATTC  1153
      |||||
seq2  AATTC  1143