BAC Information

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BAC

Clone NameB6Ng01-052B13
Chromosome5 (Build37)
Map Location 90,663,283 - 90,774,226
singlet/doubletdoublet
Overlap geneAnkrd17
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052B13.bB6Ng01-052B13.g
ACCDH875554DH875555
length1,0781,025
definitionDH875554|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B13, 5' end.DH875555|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,663,283 - 90,664,378)(90,773,197 - 90,774,226)
sequence
gaattccatacaaagagtccagttcgtatatatacaccatattctttatt
tttacctcccttactcccatcactgtcttatccttctcctccttcctcaa
cagcctctttcttgctttgaaacaattttctcttctgttctgttttaaga
agaatgtttaagctgagcatgatggtgcacatttgcaatcagagctacag
aggtataatcaagatgactgcagccaggcatggtggcgcataatcccagc
cttctggagacagagacaggaggatatctgtgagttcaagagcagaatct
ctatatagcaagtttcaggacagccaaggctacataatgaaaccctgtct
caaaaaaaaacacaatacaggaagactacaagttcaaggccaggctaggc
tacaaaataagactctgtctttaaaagcaacatatttggaaattaagaac
tgacttacaataacaatttagttcaataatatagtgcttacttggcattc
atgaggccctccctgagctcaactcttaataacccacccctcccacacac
gttttataaaaaggccaaggatttaatgttagactataatgatctcaatg
ctacaaagtggagagctactcatttagtaaatcaccatcctattatttaa
ttaagccaatatctgctgctaatataaaatcaaaactttttttttttttg
tttttgttttttttttttcgagacagggtttctctgtatagccctggctg
tcctggaactcactctgtagaccaggctggcctcgagaacacagaaatcc
gcctgcctctgcctccagagtgctgggattaaaggcatgtgccaccacgc
ctggcttaaatcaaaacatttaaaagaacaatgtttaattaagtgcatgc
ccactacccccaggctggcattgatctctgtatagctagattatgagtat
ttgtgtgtcagtgtgatgatacgcgcacaagtttctgtgcagtgtgcctg
ccgtaggaggaaattggttatcaaactgctcaattctctgcctggacgtt
tctcgtgaaactggagctagttacagaa
gaattcatggtgtaactacttgtcatgaggagaggtaacaaataccaagt
gtcacacagacacagctattacttcagatgtgctgggggcaccagttgaa
ttctttgctttgcttactatgtcgcttaagtttatataagactgcttaaa
tcatattctgtatacgggatacatcaagtttagaatatatgatatttaaa
tataatacttctcttctgtgctgttctaagttgaattttatgttttattt
agtagttagatttgggaagaatagaaaaggactgtaatgagaaaaaaatg
actatattagacagatggtaaacttggccaggaatcatgtagatggagtt
catgtagattatgaatttataaagtacactttaaaaaaaaatcattgttt
atctagtgtgcagtctagatcttaaaacctggtaagtactcagtaagtgt
ataaatgaatgctcaaactgttaatgatgatctttaaaaagaaagttact
ggctttaggccagtaaggcttagatagtaaagcccagcttctaacaaaca
aacataacaaaaattactttggttttggggtttttatataagcctgagaa
aaattttatttagacaataaaattaagtcttttaagatatttaatataga
gagaccatagtgtcgtatttagaacatactgtcaaatataggatatatgt
tagaaaacgggtagaagttacatagtgctccgtggtcaagctctttcagt
actaggactagtagtgataccatgcactctggggggctgggggtgtgtgt
gtgatttaaaaacaggagtatcaacaatttcccagccatttaacattttg
tatgacagcctgtatgccagttgctgtacaagactgtctcaaaaatacta
aaacagaaacagaagactctttatgttgcccattcttctcttagttatat
gcatgggagattactttaaatttctcctttgcaatagatgctttggctgg
gtatggtggtagatgcagtaagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90663283_90664378
seq2: B6Ng01-052B13.b_48_1125

seq1  GAATTCCATACAAAGAGTCCAGTTCGTATATATACACCATATTCTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAAAGAGTCCAGTTCGTATATATACACCATATTCTTTATT  50

seq1  TTTACCTCCCTTACTCCCATCACTGTCTTATCCTTCTCCTCCTTCCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCCCTTACTCCCATCACTGTCTTATCCTTCTCCTCCTTCCTCAA  100

seq1  CAGCCTCTTTCTTGCTTTGAAACAATTTTCTCTTCTGTTCTGTTTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTTTCTTGCTTTGAAACAATTTTCTCTTCTGTTCTGTTTTAAGA  150

seq1  AGAATGTTTAAGCTGAGCATGATGGTGCACATTTGCAATCAGAGCTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTAAGCTGAGCATGATGGTGCACATTTGCAATCAGAGCTACAG  200

seq1  AGGTATAATCAAGATGACTGCAGCCAGGCATGGTGGCGCATAATCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAATCAAGATGACTGCAGCCAGGCATGGTGGCGCATAATCCCAGC  250

seq1  CTTCTGGAGACAGAGACAGGAGGATATCTGTGAGTTCAAGAGCAGAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGACAGAGACAGGAGGATATCTGTGAGTTCAAGAGCAGAATCT  300

seq1  CTATATAGCAAGTTTCAGGACAGCCAAGGCTACATAATGAAACCCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGCAAGTTTCAGGACAGCCAAGGCTACATAATGAAACCCTGTCT  350

seq1  CAAAAAAAAACACAATACAGGAAGACTACAAGTTCAAGGCCAGGCTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAACACAATACAGGAAGACTACAAGTTCAAGGCCAGGCTAGGC  400

seq1  TACAAAATAAGACTCTGTCTTTAAAAGCAACATATTTGGAAATTAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATAAGACTCTGTCTTTAAAAGCAACATATTTGGAAATTAAGAAC  450

seq1  TGACTTACAATAACAATTTAGTTCAATAATATAGTGCTTACTTGGCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACAATAACAATTTAGTTCAATAATATAGTGCTTACTTGGCATTC  500

seq1  ATGAGGCCCTCCCTGAGCTCAACTCTTAATAACCCACCCCTCCCACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCCTCCCTGAGCTCAACTCTTAATAACCCACCCCTCCCACACAC  550

seq1  GTTTTATAAAAAGGCCAAGGATTTAATGTTAGACTATAATGATCTCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAAAAAGGCCAAGGATTTAATGTTAGACTATAATGATCTCAATG  600

seq1  CTACAAAGTGGAGAGCTACTCATTTAGTAAATCACCATCCTATTATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGGAGAGCTACTCATTTAGTAAATCACCATCCTATTATTTAA  650

seq1  TTAAGCCAATATCTGCTGCTAATATAAAATCAAAACTTTTTTTTTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCAATATCTGCTGCTAATATAAAATCAAAACTTTTTTTTTTTTTG  700

seq1  TTTTTGTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  750

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAGAACACAGAAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAGAACACAGAAATCC  800

seq1  GCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCATGTGCCACCACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCATGTGCCACCACGC  850

seq1  CTGGCTTAAAATCAAAACATTTAAAAGAACAATGTTTAAATTAAGTGCAT  900
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGGCTT-AAATCAAAACATTTAAAAGAACAATGTTT-AATTAAGTGCAT  898

seq1  GCCCACTACCCCCAGGCTGGCATTGATCTCTGTATAGCTAAGAATAATGA  950
      ||||||||||||||||||||||||||||||||||||||||   || ||||
seq2  GCCCACTACCCCCAGGCTGGCATTGATCTCTGTATAGCTA--GATTATGA  946

seq1  GTATTTGTGTGTCCAAGTGTGATGATACGCGCACAAGTTTCTGTGCAGGT  1000
      |||||||||||||  |||||||||||||||||||||||||||||||| ||
seq2  GTATTTGTGTGTC--AGTGTGATGATACGCGCACAAGTTTCTGTGCA-GT  993

seq1  GTGCCTGCCGTAGGAGGATATTGTGTATCCAACCTGCTCAATTCCTCTGC  1050
      |||||||||||||||||| ||||  ||| ||| |||||||||| ||||||
seq2  GTGCCTGCCGTAGGAGGAAATTGGTTAT-CAAACTGCTCAATT-CTCTGC  1041

seq1  CCTTGAGACAGGGTTTCTCGGTGAAACTGGAGCTAGGTTAACAGAA  1096
      |  || |||   ||||||| ||||||||||||||||  | ||||||
seq2  C--TG-GAC---GTTTCTC-GTGAAACTGGAGCTAG--TTACAGAA  1078

seq1: chr5_90773197_90774226
seq2: B6Ng01-052B13.g_68_1092 (reverse)

seq1  GGGCTTACTGGCATCTACCACCATACACAGCCAAAGCATCTATTTGCAAA  50
      ||||||||| |||||||||||||||| ||||||||||||||| |||||||
seq2  GGGCTTACT-GCATCTACCACCATACCCAGCCAAAGCATCTA-TTGCAAA  48

seq1  GGAGAAATTTTAAAGTAATCTTCCCATGCATATATACTAAGAGGAAGAAT  100
      ||||||| |||||||||||| ||||||||||||| ||||||| |||||||
seq2  GGAGAAA-TTTAAAGTAATC-TCCCATGCATATA-ACTAAGA-GAAGAAT  94

seq1  GGGCAACATTAAAGAGTCTTCTGTTTCTGTTTTAGTATTTTTGAGACAGT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACA-TAAAGAGTCTTCTGTTTCTGTTTTAGTATTTTTGAGACAGT  143

seq1  CTTGTACAGC-ACTGGCATACAGGCTGTCATACAAAATGTTAAATGGCTG  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACAGCAACTGGCATACAGGCTGTCATACAAAATGTTAAATGGCTG  193

seq1  GGAAATTGTTGATACTCCTGTTTTT-AATCACACACACACCCCCAGCCCC  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAAATTGTTGATACTCCTGTTTTTAAATCACACACACACCCCCAGCCCC  243

seq1  CCAGAGTGCATGGTATCACTACTAGTCCTAGTACTGAAAGAGCTTGACCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGCATGGTATCACTACTAGTCCTAGTACTGAAAGAGCTTGACCA  293

seq1  CGGAGCACTATGTAACTTCTACCCGTTTTCTAACATATATCCTATATTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCACTATGTAACTTCTACCCGTTTTCTAACATATATCCTATATTTG  343

seq1  ACAGTATGTTCTAAATACGACACTATGGTCTCTCTATATTAAATATCTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGTTCTAAATACGACACTATGGTCTCTCTATATTAAATATCTTA  393

seq1  AAAGACTTAATTTTATTGTCTAAATAAAATTTTTCTCAGGCTTATATAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTAATTTTATTGTCTAAATAAAATTTTTCTCAGGCTTATATAAA  443

seq1  AACCCCAAAACCAAAGTAATTTTTGTTATGTTTGTTTGTTAGAAGCTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAACCAAAGTAATTTTTGTTATGTTTGTTTGTTAGAAGCTGGG  493

seq1  CTTTACTATCTAAGCCTTACTGGCCTAAAGCCAGTAACTTTCTTTTTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTATCTAAGCCTTACTGGCCTAAAGCCAGTAACTTTCTTTTTAAA  543

seq1  GATCATCATTAACAGTTTGAGCATTCATTTATACACTTACTGAGTACTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCATTAACAGTTTGAGCATTCATTTATACACTTACTGAGTACTTA  593

seq1  CCAGGTTTTAAGATCTAGACTGCACACTAGATAAACAATGATTTTTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTTAAGATCTAGACTGCACACTAGATAAACAATGATTTTTTTTT  643

seq1  AAAGTGTACTTTATAAATTCATAATCTACATGAACTCCATCTACATGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTACTTTATAAATTCATAATCTACATGAACTCCATCTACATGATT  693

seq1  CCTGGCCAAGTTTACCATCTGTCTAATATAGTCATTTTTTTCTCATTACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCAAGTTTACCATCTGTCTAATATAGTCATTTTTTTCTCATTACA  743

seq1  GTCCTTTTCTATTCTTCCCAAATCTAACTACTAAATAAAACATAAAATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTCTATTCTTCCCAAATCTAACTACTAAATAAAACATAAAATTC  793

seq1  AACTTAGAACAGCACAGAAGAGAAGTATTATATTTAAATATCATATATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGAACAGCACAGAAGAGAAGTATTATATTTAAATATCATATATTC  843

seq1  TAAACTTGATGTATCCCGTATACAGAATATGATTTAAGCAGTCTTATATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGATGTATCCCGTATACAGAATATGATTTAAGCAGTCTTATATA  893

seq1  AACTTAAGCGACATAGTAAGCAAAGCAAAGAATTCAACTGGTGCCCCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGCGACATAGTAAGCAAAGCAAAGAATTCAACTGGTGCCCCCAG  943

seq1  CACATCTGAAGTAATAGCTGTGTCTGTGTGACACTTGGTATTTGTTACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGAAGTAATAGCTGTGTCTGTGTGACACTTGGTATTTGTTACCT  993

seq1  CTCCTCATGACAAGTAGTTACACCATGAATTC  1030
      ||||||||||||||||||||||||||||||||
seq2  CTCCTCATGACAAGTAGTTACACCATGAATTC  1025