BAC Information

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BAC

Clone NameB6Ng01-053A17
Chromosome5 (Build37)
Map Location 90,700,039 - 90,858,936
singlet/doubletdoublet
Overlap geneAnkrd17
Upstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053A17.bB6Ng01-053A17.g
ACCDH876211DH876212
length1,0251,138
definitionDH876211|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A17, 5' end.DH876212|Mus musculus domesticus DNA, BAC clone: B6Ng01-053A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,857,907 - 90,858,936)(90,700,039 - 90,701,196)
sequence
gaattcagaagacccttcctgtaacgtcaatattaaaacactgcccaata
gtacatgtagccgtgtaaatgtttttgaagaactttaatctggggctgtg
ctatgtgacataaacccttaatcccagcaccagagaagcagaggcaaatg
gagttccagagaaggagaaataatggaaggggtagaggaggaggaggacg
aggaggacgaggagcaagaggaaacagaagagtgaggaaggttaatctac
ctgccggtcagtggaccacgcatgcgctatccaggtcaccacagaccctc
actttcatcggtcctgctgagtttctaacttctatatgttcaacggccct
agaacctaacagagcaatgacagctttaaggaaatcttttttgtcacatc
aacgaagggaaaggtggaaaataggcagagcctttcagcagtgtcatgaa
tccctgctgttgtggtgagagatgaggcgctgaggccttctccctgcaag
gcaccagaggatcaacttagagcttggttctgaacaagaccttccagttc
atctgtactgagtcccttcctaagcaaacgtctgttagacgcacacgtcg
gtgggcacggcttcatcaacgaccctcagctgagggggagcccaaccatt
gcagaggagccccatcacaagacacggtgctcaggcccagcaggaaagaa
tttgctgcgttctacatgcctatgaatggacatgatcaatgacatgtggt
tagcgtctcctatgttgatctcagtgaaatgacatgactcatgtggctca
tgttgcccatcttctcatgaatcagttgttcattttcttactcgctggca
cccatttaattgaaaaataaaatcttcatacaatatattttgatcatgat
tttttttccctaccccaagttctcccagatcatttcctatctcgtttcta
cccacccaactttatggcttttcctatctctctttaaaacaaaataacaa
aacaaaaccagaaaaaaaccatgtg
gaattcagagatctgtgcatgcatagggattaaagacttggtgcccatgg
aactcttaaaaagctaaggaacttatgctgttttctcttttttgttcagg
aaacatcaatggaatgttcaatgaatgacaatagctgtaaaaaagtcaca
taaccaaagacttactaatacagatttatataaaatatttatgttcttct
acactaatatttacataataaaagcctcctagtaactataagtgccaaat
tccattacaaaaaaactaaaaacaagacaaaaagtgtaactgatcaagag
tcaagaaatgagaaaaatcctattagtcagtgatggagagggagccacaa
tagatgctctgcagaagagctggcagagacacagccactgactgcagaga
tcaggggtggccacaagggagagacgcaccaactacaacaatggagaagg
acatgaaacgtcaatgagtcacagttctgtttcagtatatgctcttcatt
tcatgttttacattaaaaaaaaaatggaaagaaaagaaactgtgtcttat
ttcagaaaaaaggaaacagaaactcagattttgatggccacattaaactg
tctactaaagatgggcttttaaagaaggacactctatatatcaaaccgta
tcacaaagaaaatctacaagtattctgagactgttaaaaatacctgtcct
accctacccacagtctctgtatttatatgcaatctacagataggtttagg
ttatgaggtgtaaaaattcttctggagagtaatttataatagcaatgtcc
cacttaaatgcagaaaaatatatagaaaatataaaatatataaaatatga
aaaagacaaagcatgaaaaaataggtgatcaacaaaacatatttccctca
tcataaaacatatatttattataattttaagcatcatttcccccaagtgc
tctgttccatgtaggttgataagtagaggattccgcaggatctgtcatga
ctatttaatttaatttaaagtaataaagtaaaagctatttaaaaaacacc
tagactattttatttgaaaatcaaaaaattaagctgagaaagagagagtg
tccaattttaggatgaagttagtaaagagggggaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90857907_90858936
seq2: B6Ng01-053A17.b_43_1067 (reverse)

seq1  CACATGTGTTTGTTTCTTGGTTTTGTTTTGTTATTTTGTTTTAAAGAGAG  50
      |||||| |||| |||| |||||||||||||||||||||||||||||||||
seq2  CACATG-GTTTTTTTC-TGGTTTTGTTTTGTTATTTTGTTTTAAAGAGAG  48

seq1  ATAGAGAAAGCCATAAAGTTGGGTGGGTAGGAAACGAGATAGGAAATGAT  100
      ||||  ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAGGAAAAGCCATAAAGTTGGGTGGGTA-GAAACGAGATAGGAAATGAT  97

seq1  CTGGGAGGACTTGGGGTAGGGAAAAAAAATCATGATCAAAATATATTGTA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAACTTGGGGTAGGGAAAAAAAATCATGATCAAAATATATTGTA  147

seq1  TGAAGATTTTATTTTTCAATTAAATGGGTTGCCAGCGAGTAAGAAAATGA  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAAGATTTTATTTTTCAATTAAATGGG-TGCCAGCGAGTAAGAAAATGA  196

seq1  ACAACTGATTCATGAAGAAGATGGGCAACATGAGCCACATGAGTCATGTC  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAACTGATTCATG-AGAAGATGGGCAACATGAGCCACATGAGTCATGTC  245

seq1  ATTTCACTGAGATCAACATAGGAGACGCTAACCACATGTCATTGATCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTGAGATCAACATAGGAGACGCTAACCACATGTCATTGATCATG  295

seq1  TCCATTCATAGGCATGTAGAACGCAGCAAATTCTTTCCTGCTGGGCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCATAGGCATGTAGAACGCAGCAAATTCTTTCCTGCTGGGCCTGA  345

seq1  GCACCGTGTCTTGTGATGGGGCTCCTCTGCAATGGTTGGGCTCCCCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGTGTCTTGTGATGGGGCTCCTCTGCAATGGTTGGGCTCCCCCTCA  395

seq1  GCTGAGGGTCGTTGATGAAGCCGTGCCCACCGACGTGTGCGTCTAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGGTCGTTGATGAAGCCGTGCCCACCGACGTGTGCGTCTAACAGA  445

seq1  CGTTTGCTTAGGAAGGGACTCAGTACAGATGAACTGGAAGGTCTTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGCTTAGGAAGGGACTCAGTACAGATGAACTGGAAGGTCTTGTTCA  495

seq1  GAACCAAGCTCTAAGTTGATCCTCTGGTGCCTTGCAGGGAGAAGGCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGCTCTAAGTTGATCCTCTGGTGCCTTGCAGGGAGAAGGCCTCA  545

seq1  GCGCCTCATCTCTCACCACAACAGCAGGGATTCATGACACTGCTGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTCATCTCTCACCACAACAGCAGGGATTCATGACACTGCTGAAAGG  595

seq1  CTCTGCCTATTTTCCACCTTTCCCTTCGTTGATGTGACAAAAAAGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTATTTTCCACCTTTCCCTTCGTTGATGTGACAAAAAAGATTTC  645

seq1  CTTAAAGCTGTCATTGCTCTGTTAGGTTCTAGGGCCGTTGAACATATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCTGTCATTGCTCTGTTAGGTTCTAGGGCCGTTGAACATATAGA  695

seq1  AGTTAGAAACTCAGCAGGACCGATGAAAGTGAGGGTCTGTGGTGACCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAACTCAGCAGGACCGATGAAAGTGAGGGTCTGTGGTGACCTGG  745

seq1  ATAGCGCATGCGTGGTCCACTGACCGGCAGGTAGATTAACCTTCCTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGCATGCGTGGTCCACTGACCGGCAGGTAGATTAACCTTCCTCACT  795

seq1  CTTCTGTTTCCTCTTGCTCCTCGTCCTCCTCGTCCTCCTCCTCCTCTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTCCTCTTGCTCCTCGTCCTCCTCGTCCTCCTCCTCCTCTACC  845

seq1  CCTTCCATTATTTCTCCTTCTCTGGAACTCCATTTGCCTCTGCTTCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATTATTTCTCCTTCTCTGGAACTCCATTTGCCTCTGCTTCTCTG  895

seq1  GTGCTGGGATTAAGGGTTTATGTCACATAGCACAGCCCCAGATTAAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAGGGTTTATGTCACATAGCACAGCCCCAGATTAAAGTT  945

seq1  CTTCAAAAACATTTACACGGCTACATGTACTATTGGGCAGTGTTTTAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAACATTTACACGGCTACATGTACTATTGGGCAGTGTTTTAATA  995

seq1  TTGACGTTACAGGAAGGGTCTTCTGAATTC  1030
      ||||||||||||||||||||||||||||||
seq2  TTGACGTTACAGGAAGGGTCTTCTGAATTC  1025

seq1: chr5_90700039_90701196
seq2: B6Ng01-053A17.g_67_1204

seq1  GAATTCAGAGATCTGTGCATGCATAGGGATTAAAGACTTGGTGCCCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCTGTGCATGCATAGGGATTAAAGACTTGGTGCCCATGG  50

seq1  AACTCTTAAAAAGCTAAGGAACTTATGCTGTTTTCTCTTTTTTGTTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAAAAAGCTAAGGAACTTATGCTGTTTTCTCTTTTTTGTTCAGG  100

seq1  AAACATCAATGGAATGTTCAATGAATGACAATAGCTGTAAAAAAGTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAATGGAATGTTCAATGAATGACAATAGCTGTAAAAAAGTCACA  150

seq1  TAACCAAAGACTTACTAATACAGATTTATATAAAATATTTATGTTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAGACTTACTAATACAGATTTATATAAAATATTTATGTTCTTCT  200

seq1  ACACTAATATTTACATAATAAAAGCCTCCTAGTAACTATAAGTGCCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATATTTACATAATAAAAGCCTCCTAGTAACTATAAGTGCCAAAT  250

seq1  TCCATTACAAAAAAACTAAAAACAAGACAAAAAGTGTAACTGATCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTACAAAAAAACTAAAAACAAGACAAAAAGTGTAACTGATCAAGAG  300

seq1  TCAAGAAATGAGAAAAATCCTATTAGTCAGTGATGGAGAGGGAGCCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATGAGAAAAATCCTATTAGTCAGTGATGGAGAGGGAGCCACAA  350

seq1  TAGATGCTCTGCAGAAGAGCTGGCAGAGACACAGCCACTGACTGCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCTCTGCAGAAGAGCTGGCAGAGACACAGCCACTGACTGCAGAGA  400

seq1  TCAGGGGTGGCCACAAGGGAGAGACGCACCAACTACAACAATGGAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTGGCCACAAGGGAGAGACGCACCAACTACAACAATGGAGAAGG  450

seq1  ACATGAAACGTCAATGAGTCACAGTTCTGTTTCAGTATATGCTCTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAACGTCAATGAGTCACAGTTCTGTTTCAGTATATGCTCTTCATT  500

seq1  TCATGTTTTACATTAAAAAAAAAATGGAAAGAAAAGAAACTGTGTCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTACATTAAAAAAAAAATGGAAAGAAAAGAAACTGTGTCTTAT  550

seq1  TTCAGAAAAAAGGAAACAGAAACTCAGATTTTGATGGCCACATTAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAAAAGGAAACAGAAACTCAGATTTTGATGGCCACATTAAACTG  600

seq1  TCTACTAAAGATGGGCTTTTAAAGAAGGACACTCTATATATCAAACCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAAAGATGGGCTTTTAAAGAAGGACACTCTATATATCAAACCGTA  650

seq1  TCACAAAGAAAATCTACAAGTATTCTGAGACTGTTAAAAATACCTGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGAAAATCTACAAGTATTCTGAGACTGTTAAAAATACCTGTCCT  700

seq1  ACCCTACCCACAGTCTCTGTATTTATATGCAATCTACAGATAGGTTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACCCACAGTCTCTGTATTTATATGCAATCTACAGATAGGTTTAGG  750

seq1  TTATGAGGTGTAAAAATTCTTCTGGAGAGTAATTTATAATAGCAATGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGTGTAAAAATTCTTCTGGAGAGTAATTTATAATAGCAATGTCC  800

seq1  CACTTAAATGCAGAAAAATATATAGAAAATATAAAATATATAAAATATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAATGCAGAAAAATATATAGAAAATATAAAATATATAAAATATGA  850

seq1  AAAAGAC-AAGCATGAAAAAATAGGTGATCAACAAAACATATTTCCCTCA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAAGCATGAAAAAATAGGTGATCAACAAAACATATTTCCCTCA  900

seq1  TCATAAAACATATATTTAATATTAATTTTAAGCATCATTTCCCCCAAGTG  949
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  TCATAAAACATATATTTATTA-TAATTTTAAGCATCATTTCCCCCAAGTG  949

seq1  CTCTGTTCCATGTTAGGTTGATAAGTAGAGGATTCCGCAGGATCTTGTCA  999
      |||||||||||| ||||||||||||||||||||||||||||||| |||| 
seq2  CTCTGTTCCATG-TAGGTTGATAAGTAGAGGATTCCGCAGGATC-TGTC-  996

seq1  ATGACTATTTAATTTAATTTAAAGTAATTAAAGTAAAAGCTATTTTAAAA  1049
      ||||||||||||||||||||||||||| |||||||||||||||||  |||
seq2  ATGACTATTTAATTTAATTTAAAGTAA-TAAAGTAAAAGCTATTT--AAA  1043

seq1  AAACACCTAGAACTATTTATTTTGAAAAATCAAAAAAATTTTAAAGCTGA  1099
      |||||||||| |||||||  |||| ||||||||||||    | |||||||
seq2  AAACACCTAG-ACTATTTTATTTG-AAAATCAAAAAA----TTAAGCTGA  1087

seq1  GTAAG-GAGAGTTGTCAAATTTTTTAGGGAATTGAAGTTAGTTAAAAGGA  1148
      | ||| ||||| |||| ||  |||||||    ||||||||||   || ||
seq2  GAAAGAGAGAG-TGTCCAA--TTTTAGG---ATGAAGTTAGT---AAAGA  1128

seq1  GGAGGAGGCC  1158
      || |||||||
seq2  GGGGGAGGCC  1138