BAC Information

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BAC

Clone NameB6Ng01-053O01
Chromosome5 (Build37)17 (Build37)
Map Location 91,018,060 - 91,018,8497,086,556 - 7,086,657
singlet/doubletsingletsinglet
Overlap geneLOC622307
Upstream geneLOC631105, Adamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105
Downstream geneRassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053O01.bB6Ng01-053O01.g
ACCDH876792DH876793
length792160
definitionDH876792|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O01, 5' end.DH876793|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,018,060 - 91,018,849)(7,086,556 - 7,086,657)
sequence
ggcgatgggagacccattctcgcccatcatccatagggaaggccatttct
tcttgtttcggggtgaacttccatcctcagctcttgtgctcttcctccct
ctattggccattctgagaactgcatccatgaactagctgccgggccggcg
gaaagcaagcctggagcgaggagaaaaagctatttccagagatgagacta
gagcccttgagaggtgtgaggaggtgtttgggaactcgcagttgtgagtc
agaagagagaggggagtgtacgtgaggaagcttcattataactgaagact
tcattaggatagtcaagaccgtccctgtatatgtaagagagctggggtga
ggtacccttttcgtgtgggtgtcaggagggaaggggattctgatggaaga
acatagttaaaaatgggtgcaggtggacctaccatcaccaccgtcaccat
tatcaacaccacaaccatcaccaccaccaccatcaccatcatcgccacca
tccccatcatccccatcatcgccatcatcgccatcaccacctccatcatg
cttagaaacagagaagtcctgtggtgtaggttgccagggttcatgatctg
aagttttccaagtaacactagagtaagagaaataaggaaatgcttgtcaa
cgtgtatacatttccaactataaggacgagccagttctaggtctggagag
acggctgggggtggggctaacgtgcttacggtagaagcatgatacccgag
tttcaccttcagcacatctacagaacctaagtgaagcttcat
aaggctagcctggtctacagagctggttccaggacagccaaggctatgta
agcatatcgggcttcaaatctagaaagaatagatagacagatagatagat
aggtagatagatagatagatagatagatagatagatagatagatagatag
atagatagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91018060_91018849
seq2: B6Ng01-053O01.b_52_842

seq1  GGCGATGGGAGACCCATTCTCGCCCATCATCCATAGGGAAGGCCATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATGGGAGACCCATTCTCGCCCATCATCCATAGGGAAGGCCATTTCT  50

seq1  TCTTGTTTCGGGGTGAACTTCCATCCTCAGCTCTTGTGCTCTTCCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCGGGGTGAACTTCCATCCTCAGCTCTTGTGCTCTTCCTCCCT  100

seq1  CTATTGGCCATTCTGAGAACTGCATCCATGAACTAGCTGCCGGGCCGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCCATTCTGAGAACTGCATCCATGAACTAGCTGCCGGGCCGGCG  150

seq1  GAAAGCAAGCCTGGAGCGAGGAGAAAAAGCTATTTCCAGAGATGAGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGCCTGGAGCGAGGAGAAAAAGCTATTTCCAGAGATGAGACTA  200

seq1  GAGCCCTTGAGAGGTGTGAGGAGGTGTTTGGGAACTCGCAGTTGTGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTGAGAGGTGTGAGGAGGTGTTTGGGAACTCGCAGTTGTGAGTC  250

seq1  AGAAGAGAGAGGGGAGTGTACGTGAGGAAGCTTCATTATAACTGAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGAGGGGAGTGTACGTGAGGAAGCTTCATTATAACTGAAGACT  300

seq1  TCATTAGGATAGTCAAGACCGTCCCTGTATATGTAAGAGAGCTGGGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGATAGTCAAGACCGTCCCTGTATATGTAAGAGAGCTGGGGTGA  350

seq1  GGTACCCTTTTCGTGTGGGTGTCAGGAGGGAAGGGGATTCTGATGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCTTTTCGTGTGGGTGTCAGGAGGGAAGGGGATTCTGATGGAAGA  400

seq1  ACATAGTTAAAAATGGGTGCAGGTGGACCTACCATCACCACCGTCACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTAAAAATGGGTGCAGGTGGACCTACCATCACCACCGTCACCAT  450

seq1  TATCAACACCACAACCATCACCACCACCACCATCACCATCATCGCCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACACCACAACCATCACCACCACCACCATCACCATCATCGCCACCA  500

seq1  TCCCCATCATCCCCATCATCGCCATCATCGCCATCACCACCTCCATCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCATCCCCATCATCGCCATCATCGCCATCACCACCTCCATCATG  550

seq1  CTTAGAAACAGAGAAGTCCTGTGGTGTAGGTTGCCAGGGTTCATGATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACAGAGAAGTCCTGTGGTGTAGGTTGCCAGGGTTCATGATCTG  600

seq1  AAGTTTTCCAAGTAACACTAGAGTAAGAGAAATAAGGAAATGCTTGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCCAAGTAACACTAGAGTAAGAGAAATAAGGAAATGCTTGTCAA  650

seq1  CGTGTATACATTTCCAACTAT-AGGACGAGCCAGTTCTAGGTCTGGAGAG  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGTGTATACATTTCCAACTATAAGGACGAGCCAGTTCTAGGTCTGGAGAG  700

seq1  ACGGCTGGGGGTGGGGCTAACGTGCTTACGGTAGAAGCATGAGACCCGAG  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACGGCTGGGGGTGGGGCTAACGTGCTTACGGTAGAAGCATGATACCCGAG  750

seq1  TTTCACCTTCAGCACACCTACAGAACCTAAGTGAAGCTTCA  790
      |||||||||||||||| ||||||||||||||||||||||||
seq2  TTTCACCTTCAGCACATCTACAGAACCTAAGTGAAGCTTCA  791

seq1: chr17_7086556_7086657
seq2: B6Ng01-053O01.g_144_232 (reverse)

seq1  ACTATCTATCTATCTACCTACCTATAATCTATCTATTTATATATCTACCT  50
      |||||||||||||||           |||||||||| ||| |||||| | 
seq2  ACTATCTATCTATCT-----------ATCTATCTATCTATCTATCTATC-  38

seq1  ATTATCTATCTATCTATCTACCTATCTATCTATCTATCTATCTA-TCTTT  99
        ||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  --TATCTATCTATCTATCTACCTATCTATCTATCTGTCTATCTATTCTTT  86

seq1  CTA  102
      |||
seq2  CTA  89