BAC Information

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BAC

Clone NameB6Ng01-054B22
Chromosome5 (Build37)
Map Location 148,310,184 - 148,486,148
singlet/doubletdoublet
Overlap genePan3, Flt1
Upstream gene4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054B22.bB6Ng01-054B22.g
ACCDH876959DH876960
length8941,141
definitionDH876959|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B22, 5' end.DH876960|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,310,184 - 148,311,021)(148,485,010 - 148,486,148)
sequence
gaattcccctgtgctttggctctgtatttgatcatactacctgttcattt
ccttctctgaactgtttaaacttttatttttatttatgattcattttatt
taaaattgaatgaggaatcttttggggaggatctttatactatcggaaca
tatacctttccttgtaacaggatctttactaaatatttttcaaactaaaa
tttatgtaaatttttaacagtcaccagcatatccaatttctgatctgtta
gtcaaatgtgtatataaaactgtgaaattataaattccagaactagttga
caggttttgatttctgaatggtaaaatgaaatatccctgcatcttgctgt
gtcccatcaggtcccctctttatatactatctgtgcatttgtcatgtaga
agagatcgatctgtgtgaatattgaagtgtgttcaactgatccctaatat
acttactgaccccagagcacaaggtgtgacatgggccaaggagaaattgt
gagagttctcaattcaagaaacaaacaatggagccgggcgtggtggccca
cgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagtt
cgaggccagcctggtctacaaagtgaggtccaggacagccagggctacac
agagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaagaaaaa
aaaaagaaacaaagaaacaatgggatggataaagatctaaagtgggcatg
aacatgcctgtgaggctgtgcacgaagaaggaattcaggctcttgttgct
gtctcactaagctgtttgatttccatccacagtgtacactgtgagcttta
tgagagaagtgagacgtaagactgaagcttcacgctgcttctag
gaattcatagactatctgagttcaaagggctcctaagaacttctagaagc
ctgcagatagggcagagccaagccacctgactcgtctaaacagagaacat
caaggcattgattttactttcaaaacattttaaaactcctgttgcttggt
gcctttgattgtttctctatggacaattggtgtgaccatttgtgtaatta
ataagaactccacatgagcccacaataggagcctctatttttatttttat
cagatttagtggatccgacttacaagcgttctcatacttgaacttctttt
tgttttactttgttttgtttttgtttttcgagacagggtttctctgcata
gccctggctgtcctggacctcactctgtagaccaggctgatcttgaactc
agagatccgcctgcctctgcctccccagtgctgggagtaaagacatgcgc
caccacgtccagctgagttcttgttcttctcatggaggcttaaggaaaac
acttaacaaacagctcggtggactaagtcagactggaacctctgagttag
ttcttaagacccgatggccaccaacacccctaaggggacaataagccacc
actttcttttcttcatttagcttagttcatcctctttgtgaataaagatg
aaatgttacccagtctaaaaccctcgcctgcctttacccagtacttagtg
cccaaagattttgttttaaaaaaacaaaacaaaacaaaacaaaaaccagt
gctgatacccaaagactcaaaactaaatccacttgaggttgtaaacagaa
agggcacatgccagtcaaagtgacatcacccagctactgaaagggactaa
cacaccatgctgttaactacaggttaaaagatgggctcgcctgcaacatt
gaagtctgctcgctatttggtactgggctactcataattatcaaagattg
tgacaaccgaggatgcaggggactatacgatcttgctgggcataaagcag
tcaaggctatttaaaaatcctcactgccactcctcattgtaaacggtaag
tttatgttcttgtgagatctggaacccagggcaaagtaatgaaccgtttt
tttggttcgaagtcgatataactatacaggaaacaaacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148310184_148311021
seq2: B6Ng01-054B22.b_44_880

seq1  GAATTCCCCTGTGCTTTGGCTCTGTATTTGATCATACTACCTGTTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTGCTTTGGCTCTGTATTTGATCATACTACCTGTTCATTT  50

seq1  CCTTCTCTGAACTGTTTAAACTTTTATTTTTATTTATGATTCATTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTGAACTGTTTAAACTTTTATTTTTATTTATGATTCATTTTATT  100

seq1  TAAAATTGAATGAGGAATCTTTTGGGGAGGATCTTTATACTATCGGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGAATGAGGAATCTTTTGGGGAGGATCTTTATACTATCGGAACA  150

seq1  TATACCTTTCCTTGTAACAGGATCTTTACTAAATATTTTTCAAACTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTTCCTTGTAACAGGATCTTTACTAAATATTTTTCAAACTAAAA  200

seq1  TTTATGTAAATTTTTAACAGTCACCAGCATATCCAATTTCTGATCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAAATTTTTAACAGTCACCAGCATATCCAATTTCTGATCTGTTA  250

seq1  GTCAAATGTGTATATAAAACTGTGAAATTATAAATTCCAGAACTAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGTGTATATAAAACTGTGAAATTATAAATTCCAGAACTAGTTGA  300

seq1  CAGGTTTTGATTTCTGAATGGTAAAATGAAATATCCCTGCATCTTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTGATTTCTGAATGGTAAAATGAAATATCCCTGCATCTTGCTGT  350

seq1  GTCCCATCAGGTCCCCTCTTTATATACTATCTGTGCATTTGTCATGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCAGGTCCCCTCTTTATATACTATCTGTGCATTTGTCATGTAGA  400

seq1  AGAGATCGATCTGTGTGAATATTGAAGTGTGTTCAACTGATCCCTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCGATCTGTGTGAATATTGAAGTGTGTTCAACTGATCCCTAATAT  450

seq1  ACTTACTGACCCCAGAGCACAAGGTGTGACATGGGCCAAGGAGAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGACCCCAGAGCACAAGGTGTGACATGGGCCAAGGAGAAATTGT  500

seq1  GAGAGTTCTCAATTCAAGAAACAAACAATGGAGCCGGGCGTGGTGGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCTCAATTCAAGAAACAAACAATGGAGCCGGGCGTGGTGGCCCA  550

seq1  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  600

seq1  CGAGGCCAGCCTGGTCTACAAAGTGAGGTCCAGGACAGCCAGGGCTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCAGCCTGGTCTACAAAGTGAGGTCCAGGACAGCCAGGGCTACAC  650

seq1  AGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAGAAAA  700
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCGAAAAACC-AAAAAAAAAAAAAAAAAAAAGAAAA  699

seq1  AAAAAAGAAACAAAGAAACAATGGGATGGATAAAGATCTAGAGTGGGCAT  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAAAAGAAACAAAGAAACAATGGGATGGATAAAGATCTAAAGTGGGCAT  749

seq1  GAACATGCCTGTGAGGCTGTGCAGGAGGAAGGAATTCAGGCTCTTGTTGC  800
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  GAACATGCCTGTGAGGCTGTGCACGAAGAAGGAATTCAGGCTCTTGTTGC  799

seq1  TGTCTCACTAAGCTGTTTGAATTCCATCCACAGTGTAC  838
      |||||||||||||||||||| |||||||||||||||||
seq2  TGTCTCACTAAGCTGTTTGATTTCCATCCACAGTGTAC  837

seq1: chr5_148485010_148486148
seq2: B6Ng01-054B22.g_66_1206 (reverse)

seq1  AAAGTTTGTTTTCCTTGATAGTTTATACTGACTTTCGAACCAGAAAA--C  48
      |||||||| ||||||  |||| |||||  ||| ||||||||| ||||   
seq2  AAAGTTTG-TTTCCTGTATAG-TTATATCGAC-TTCGAACCAAAAAAACG  47

seq1  GATCATTAACTTTGCCCTGGGGTCCAGATCTCACAGGAACATTAAACTTA  98
      | ||||| ||||||||||||| ||||||||||||| ||||| ||||||||
seq2  GTTCATT-ACTTTGCCCTGGGTTCCAGATCTCACAAGAACA-TAAACTTA  95

seq1  CCGTTTACAATGA-GAGTGGCAGTGAGG-TTTTTAAATAGCCTTGACTGC  146
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CCGTTTACAATGAGGAGTGGCAGTGAGGATTTTTAAATAGCCTTGACTGC  145

seq1  TTTATGCCCAGCAAGATCGTATAGTCCCCTGCATCCTCGGTTGTCAC-AT  195
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTATGCCCAGCAAGATCGTATAGTCCCCTGCATCCTCGGTTGTCACAAT  195

seq1  CTTTGATAATTAATGAGTAGCCATGTACCAAATAGCGAGCAGACTTCAAT  245
      ||||||||||| ||||||||||  ||||||||||||||||||||||||||
seq2  CTTTGATAATT-ATGAGTAGCCCAGTACCAAATAGCGAGCAGACTTCAAT  244

seq1  GTTGCAGGCGAG-CCATCTTTTAACCTGTAGTTAACAGCATGGTGTGTTA  294
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGGCGAGCCCATCTTTTAACCTGTAGTTAACAGCATGGTGTGTTA  294

seq1  GTCCC-TTCAGTAGCTGGGTGATGTCACTTTGACTGGCATGTGCCCTTTC  343
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTCAGTAGCTGGGTGATGTCACTTTGACTGGCATGTGCCCTTTC  344

seq1  TGTTTACAACCTCAAGTGGA-TTAGTTTTGAGTCTTTGGGTATCAGCACT  392
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTTACAACCTCAAGTGGATTTAGTTTTGAGTCTTTGGGTATCAGCACT  394

seq1  GGTTTTTGTTTTGTTTTGTTTTGTTTTTTTAAAACAAAATCTTTGGGCAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGTTTTGTTTTGTTTTGTTTTTTTAAAACAAAATCTTTGGGCAC  444

seq1  TAAGTACTGGGTAAAGGCAGGCGAGGGTTTTAGACTGGGTAACATTTCAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTGGGTAAAGGCAGGCGAGGGTTTTAGACTGGGTAACATTTCAT  494

seq1  CTTTATTCACAAAGAGGATGAACTAAGCTAAATGAAGAAAAGAAAGTGGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCACAAAGAGGATGAACTAAGCTAAATGAAGAAAAGAAAGTGGT  544

seq1  GGCTTATTGTCCCCTTAGGGGTGTTGGTGGCCATCGGGTCTTAAGAACTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTGTCCCCTTAGGGGTGTTGGTGGCCATCGGGTCTTAAGAACTA  594

seq1  ACTCAGAGGTTCCAGTCTGACTTAGTCCACCGAGCTGTTTGTTAAGTGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGGTTCCAGTCTGACTTAGTCCACCGAGCTGTTTGTTAAGTGTT  644

seq1  TTCCTTAAGCCTCCATGAGAAGAACAAGAACTCAGCTGGACGTGGTGGCG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAGCCTCCATGAGAAGAACAAGAACTCAGCTGGACGTGGTGGCG  694

seq1  CATGTCTTTACTCCCAGCACTGGGGAGGCAGAGGCAGGCGGATCTCTGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTACTCCCAGCACTGGGGAGGCAGAGGCAGGCGGATCTCTGAG  744

seq1  TTCAAGATCAGCCTGGTCTACAGAGTGAGGTCCAGGACAGCCAGGGCTAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATCAGCCTGGTCTACAGAGTGAGGTCCAGGACAGCCAGGGCTAT  794

seq1  GCAGAGAAACCCTGTCTCGAAAAACAAAAACAAAACAAAGTAAAACAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAACCCTGTCTCGAAAAACAAAAACAAAACAAAGTAAAACAAAA  844

seq1  AGAAGTTCAAGTATGAGAACGCTTGTAAGTCGGATCCACTAAATCTGATA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCAAGTATGAGAACGCTTGTAAGTCGGATCCACTAAATCTGATA  894

seq1  AAAATAAAAATAGAGGCTCCTATTGTGGGCTCATGTGGAGTTCTTATTAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATAGAGGCTCCTATTGTGGGCTCATGTGGAGTTCTTATTAA  944

seq1  TTACACAAATGGTCACACCAATTGTCCATAGAGAAACAATCAAAGGCACC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAATGGTCACACCAATTGTCCATAGAGAAACAATCAAAGGCACC  994

seq1  AAGCAACAGGAGTTTTAAAATGTTTTGAAAGTAAAATCAATGCCTTGATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAGGAGTTTTAAAATGTTTTGAAAGTAAAATCAATGCCTTGATG  1044

seq1  TTCTCTGTTTAGACGAGTCAGGTGGCTTGGCTCTGCCCTATCTGCAGGCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTTTAGACGAGTCAGGTGGCTTGGCTCTGCCCTATCTGCAGGCT  1094

seq1  TCTAGAAGTTCTTAGGAGCCCTTTGAACTCAGATAGTCTATGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGTTCTTAGGAGCCCTTTGAACTCAGATAGTCTATGAATTC  1141