BAC Information

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BAC

Clone NameB6Ng01-054C15
Chromosome5 (Build37)
Map Location 16,099,764 - 16,100,824
singlet/doubletsinglet
Overlap geneHgf
Upstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
Downstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054C15.bB6Ng01-054C15.g
ACCDH876992DH876993
length1,2731,040
definitionDH876992|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C15, 5' end.DH876993|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgttctcactgcaaatgtgatgattgtacatgtagctagata
taatcactctataatgcattcatacttcaaagcattgtatagatggcaaa
tgcatacaaatctaaacatgacaatttgaataaagggtgcacctgaaaag
aaaaaatggaaacattagaattaaaaaagctggagtaatttccataaagg
tacacgttaactcattaactaggctataatacaaatacatatgacaaaaa
taagagttaataacatgagtaaagaattcagtgatagtcattcaaactga
tatcaggtaagaaaacaaaagagtatggcacactgtattgtagtgtatca
ctatggagtactggcatcagtaataccaaaaagagaggagaaatagtaga
aaagagatattatctgtaaaattactaatgaaacctcagtgtcccagctg
cacccaggagagctttaacaggtgagagcttctgggtaagaaaggctttg
ttttcagtgaagtaaccatttgtgagttactagagctctagcttcatacc
tataaccataaaggttgccctggttaaacctagtggatagcaaagaaaaa
gaaaaaacagtgaagagattgaattctagcaacttagaagcacacctaaa
agctctagaatgaaaagagtcaagtacaaaacaagaacaatacaggcagg
aaataatcaaactgagggctggaattaataatatagaagcaatataaaga
ataatgaaaataagaattgattctttgagaaaatcaacaaaatagccaag
cccttacccaaaataactaaaaagcagagatataatatcaaaattaacaa
agtcagaaatgaatattggggcatatccacagacacaaaggaaatccaaa
gaattattagataatattttgaaaactgtacttcacaaaattgaaaagtc
ttagaaatgacaatttttccatagataacacttaacaaagttactcagat
cagatatatgatttataactagtaggaatacaagtagttattaaaagttt
ctcaccacacacacaaaaaaagcgatggcagacagtttagcaaagattct
aacccattcaaaaagtatgcatactcctcaatatacccgaaatgaataga
gagactgcagtttattatggagacacagtcattcggtacaatctccaatt
tcgaaaagagtgtcggactgtaaccgtatcgaattggtatatcgaaccga
tttattgtgtgaactcaccttac
gaattccctgtcagcgttgggattcgcagtaccctcacaagcatgatatc
actcccgagaacttcaaatgcaagtgagtaggtttcaggcaatgctgcaa
actccagcagatgccagggaaatgaggaagactgctttcgctccctctct
cagtattacaatgtagcggcctccgtgtacttcagggcaaatgggctcag
tctctttttgtttttttttttttttttctggcctcaaataaacatttttt
ttttttggtattttgtttttgtttttgttttgttttgttttgttttgttt
tgttttgttttgttttcgagacagggtttctctgtgtagccctggctgtc
ctgcaactcactttgtagaccaggctggccttgaaaaaatctgcctgcct
ctgcctccctgggattaaaggcgtgcgccaccaccgctggcaaataagca
atttttaacatgtattctaggtaatgctgatctagagggttgacaaacca
tgttttataaaacacatctctaggttcttcctcatttcagttttgcttgt
aaagacttatgtaagaaatcaattttttatgataacgggtttcagactcg
atccctctcaaggtttcctatttgtatgaaggcaaggattacattttctt
tcttttacagtgaggtgcagtttgatttctatcagcacttccttcaaatt
gctaagttttcagccataaaaatctgggaacaaaatgattttcagtagtg
tgcttccaattatttttggatctgtgtaaataatcagaattatcttaatc
agtcaaatcagagaaactggcttctagtattaattacattgtggacttga
gccttccccataactccttgcctacaaattgtcttgtaggataggtgcaa
caatactgtcatttgttttaaattgtatacctcgttggagagctttccaa
agttgcttttgaatttaaacaacatgcatgcacatgctgctgaaagcact
tataatcacctatatgttttaataatggctttatagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16099764_16100824
seq2: B6Ng01-054C15.g_66_1105

seq1  GAATTCCCTGTCAGCGTTGGGATTCGCAGTACCCTCACAAGCATGATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTCAGCGTTGGGATTCGCAGTACCCTCACAAGCATGATATC  50

seq1  ACTCCCGAGAACTTCAAATGCAAGTGAGTAGGTTTCAGGCAATGCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCGAGAACTTCAAATGCAAGTGAGTAGGTTTCAGGCAATGCTGCAA  100

seq1  ACTCCAGCAGATGCCAGGGAAATGAGGAAGACTGCTTTCGCTCCCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCAGATGCCAGGGAAATGAGGAAGACTGCTTTCGCTCCCTCTCT  150

seq1  CAGTATTACAATGTAGCGGCCTCCGTGTACTTCAGGGCAAATGGGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTACAATGTAGCGGCCTCCGTGTACTTCAGGGCAAATGGGCTCAG  200

seq1  TCTCTTTTTGTTTTTTTTTTTTTTTTTCTGGCCTCAAATAAACATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTGTTTTTTTTTTTTTTTTTCTGGCCTCAAATAAACATTTTTT  250

seq1  TTTTTTGGTATTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTATTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTT  300

seq1  TGTTTTGTTTTGTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  350

seq1  CTGCAACTCACTTTGTAGACCAGGCTGGCCTTGAAAAAATCTGCCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTCACTTTGTAGACCAGGCTGGCCTTGAAAAAATCTGCCTGCCT  400

seq1  CTGCCTCCCTGGGATTAAAGGCGTGCGCCACCACCGCTGGCAAATAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCTGGGATTAAAGGCGTGCGCCACCACCGCTGGCAAATAAGCA  450

seq1  ATTTTTAACATGTATTCTAGGTAATGCTGATCTAGAGGGTTGACAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACATGTATTCTAGGTAATGCTGATCTAGAGGGTTGACAAACCA  500

seq1  TGTTTTATAAAACACATCTCTAGGTTCTTCCTCATTTCAGTTTTGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATAAAACACATCTCTAGGTTCTTCCTCATTTCAGTTTTGCTTGT  550

seq1  AAAGACTTATGTAAGAAATCAATTTTTTATGATAACGGGTTTCAGACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTATGTAAGAAATCAATTTTTTATGATAACGGGTTTCAGACTCG  600

seq1  ATCCCTCTCAAGGTTTCCTATTTGTATGAAGGCAAGGATTACATTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTCAAGGTTTCCTATTTGTATGAAGGCAAGGATTACATTTTCTT  650

seq1  TCTTTTACAGTGAGGTGCAGTTTGATTTCTATCAGCACTTCCTTCAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACAGTGAGGTGCAGTTTGATTTCTATCAGCACTTCCTTCAAATT  700

seq1  GCTAAGTTTTCAGCCATAAAAATCTGGGAACAAAATGATTTTCAGTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTTTCAGCCATAAAAATCTGGGAACAAAATGATTTTCAGTAGTG  750

seq1  TGCTTCCAATTATTTTTGGATCTGTGTAAATAATCAGAATTATCTTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAATTATTTTTGGATCTGTGTAAATAATCAGAATTATCTTAATC  800

seq1  AGTCAAATCAGAGAAACTGGCTTCTAGTATTAATTACATTGTGGACTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATCAGAGAAACTGGCTTCTAGTATTAATTACATTGTGGACTTGA  850

seq1  GCCTTCCCCATAACTCCTTGCCTACAAATTGTCTTGTAGGATAGGTGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCCATAACTCCTTGCCTACAAATTGTCTTGTAGGATAGGTGCAA  900

seq1  CAATACTGTCATTTGTTTTTAAATTGTATACCTCGTTGGAAGAAGCTTTC  950
      ||||||||||||||| ||||||||||||||||||||||||   |||||||
seq2  CAATACTGTCATTTG-TTTTAAATTGTATACCTCGTTGGA--GAGCTTTC  947

seq1  CAAAGTTGCTTTTGAAATTTAAAACATACATGCCATGCACCATGGCTTGG  1000
      ||||||||||||||||  || ||||| ||||| |||||| ||| |||  |
seq2  CAAAGTTGCTTTTGAA--TTTAAACA-ACATG-CATGCA-CAT-GCT--G  989

seq1  CTGAAACAGCACCTATAAATCACCTATATTGGTTTTATATAATTGGCTTT  1050
      |||||  ||||| ||| ||||||||||||  |||||| |||| |||||||
seq2  CTGAA--AGCACTTAT-AATCACCTATAT--GTTTTA-ATAA-TGGCTTT  1032

seq1  TAGTAAGACAA  1061
           ||||||
seq2  ---ATAGACAA  1040