BAC Information

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BAC

Clone NameB6Ng01-055C16
Chromosome5 (Build37)
Map Location 78,250,372 - 78,251,459
singlet/doubletsinglet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055C16.b
ACCDH877704
length1,123
definitionDH877704|Mus musculus domesticus DNA, BAC clone: B6Ng01-055C16, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttattttatatcgccctgggcctgttttggtttactgctgtaac
tgattatcactcaggatgctctcttaggaacttcctgtgcgtgatctggg
tgaccatgacatctctcccaagtcttacctgtcactttccctctaagtga
ggagataccttaagacttcacttcatgctgtataatgactctactcagtt
ccagttttcctctggtggaggcggcggacatttagttccatagtgtaggg
aactctatgctaaatgtgggacacatgaaaacaaattatgtcacttttaa
catcaaagttttgaattttaagaggttcaggcaaaaatcttaattcttaa
ttatattacagtgagccgaataacttagaggaaaaattgtggatttaaag
aaatgctatgtgcttcatagtagaccattaacgttgcctcagagactcta
atttatggctgtctcaattttcatttacacagaaacttaagtcatagcct
agtttcttatacatgcttttatattaccccaaaagactgacgtattgtga
gctaactcgtgcctttaatttctatccatctctgaatttttcaagttatt
tttaacacacatgcccccaaattactgatggttgattgagaatattttgt
gcttctgatgttgagaataaaatatttggaaccaaaagtcataaactgat
aggaatcaaattgattctgaaataactttttgcttgtttatgaattttct
tgcaaaaaaaaagtctttataatgtttaggctacatctgttctttcatat
ttgatatagatactgtaaataatccagatatatgcactgccttggaaaac
tcaacaacagcaggatttgaacagattctctaatggcaatgactgactgg
gtctaagagggggttagcagatttgtgctcctgcagttcctatctgatct
aggtatggatgagtttgcagcctattttaaccattgagactttagcaaaa
ggttgttgtcagcaatctcttgtgtgatgggctacaggtaactgaatcat
atgtcctcatcttcacccacattcgaaacctgttggctcatactaatttg
gggttagcatgttggccttaaaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78250372_78251459
seq2: B6Ng01-055C16.b_99_1166 (reverse)

seq1  TTTTATAGGCCAACATTGCTTACCCCAAATTAGTAGTGAGCCCAACAGTG  50
      ||||| ||||||||| |||| |||||||||||||| |||| ||||||  |
seq2  TTTTA-AGGCCAACA-TGCTAACCCCAAATTAGTA-TGAG-CCAACA--G  44

seq1  TTTTCGAATGTGGGGTGAAGGATGAGGAACATATGAATACAGTTACCTGT  100
       |||||||||| ||||||| ||||||| ||||||| || |||||||||| 
seq2  GTTTCGAATGT-GGGTGAA-GATGAGG-ACATATG-ATTCAGTTACCTG-  89

seq1  TAGCCCCATCACAC-AGAGATTTGCTGACAACAAACCTTTTGCTAAAGTC  149
      ||| |||||||||| ||||| ||||||||||| |||||||||||||||||
seq2  TAG-CCCATCACACAAGAGA-TTGCTGACAAC-AACCTTTTGCTAAAGTC  136

seq1  TCAATGGTTAAAATAGGCTGCAAACTTCATCCATACCTAGATCAGATAGG  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAATGGTTAAAATAGGCTGCAAAC-TCATCCATACCTAGATCAGATAGG  185

seq1  AACTGCAGGAGCACAAATCCTGCTAACCCCCTCTTAGACCCAGTCAGTCA  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACTGCAGGAGCACAAAT-CTGCTAACCCCCTCTTAGACCCAGTCAGTCA  234

seq1  TTGCCATTAGAGAATCTGTTCAAATCCTGCTGTTGTTTGAGTTTTCCAAG  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGCCATTAGAGAATCTGTTCAAATCCTGCTGTTG-TTGAGTTTTCCAAG  283

seq1  GCAGTGCATATATCTGGATTATTTACAGTATCTATATCAAATATGAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCATATATCTGGATTATTTACAGTATCTATATCAAATATGAAAGA  333

seq1  ACAGATGTAGCCTAAACATTATAAAGACTTTTTTTTTGCAAGAAAATTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTAGCCTAAACATTATAAAGACTTTTTTTTTGCAAGAAAATTCA  383

seq1  TAAACAAGCAAAAAGTTATTTCAGAATCAATTTGATTCCTATCAGTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGCAAAAAGTTATTTCAGAATCAATTTGATTCCTATCAGTTTAT  433

seq1  GACTTTTGGTTCCAAATATTTTATTCTCAACATCAGAAGCACAAAATATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGGTTCCAAATATTTTATTCTCAACATCAGAAGCACAAAATATT  483

seq1  CTCAATCAACCATCAGTAATTTGGGGGCATGTGTGTTAAAAATAACTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCAACCATCAGTAATTTGGGGGCATGTGTGTTAAAAATAACTTGA  533

seq1  AAAATTCAGAGATGGATAGAAATTAAAGGCACGAGTTAGCTCACAATACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGAGATGGATAGAAATTAAAGGCACGAGTTAGCTCACAATACG  583

seq1  TCAGTCTTTTGGGGTAATATAAAAGCATGTATAAGAAACTAGGCTATGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTTGGGGTAATATAAAAGCATGTATAAGAAACTAGGCTATGAC  633

seq1  TTAAGTTTCTGTGTAAATGAAAATTGAGACAGCCATAAATTAGAGTCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCTGTGTAAATGAAAATTGAGACAGCCATAAATTAGAGTCTCT  683

seq1  GAGGCAACGTTAATGGTCTACTATGAAGCACATAGCATTTCTTTAAATCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACGTTAATGGTCTACTATGAAGCACATAGCATTTCTTTAAATCC  733

seq1  ACAATTTTTCCTCTAAGTTATTCGGCTCACTGTAATATAATTAAGAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTTCCTCTAAGTTATTCGGCTCACTGTAATATAATTAAGAATTA  783

seq1  AGATTTTTGCCTGAACCTCTTAAAATTCAAAACTTTGATGTTAAAAGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGCCTGAACCTCTTAAAATTCAAAACTTTGATGTTAAAAGTGA  833

seq1  CATAATTTGTTTTCATGTGTCCCACATTTAGCATAGAGTTCCCTACACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTGTTTTCATGTGTCCCACATTTAGCATAGAGTTCCCTACACTA  883

seq1  TGGAACTAAATGTCTGTTGAATTAATCAGTAGAAAACTAGAACCTGTG-A  948
      |||||||||||||| |  |  |  | |||  ||||||| ||| ||| | |
seq2  TGGAACTAAATGTCCGCCGCCTCCACCAGAGGAAAACTGGAA-CTGAGTA  932

seq1  GAGTCATTAAATGGGAAAGAAGTCGTGTCATATGGTAACAAGTGACTTTA  998
      ||||||||| |   | | |||||   ||| || |||| |   | || |||
seq2  GAGTCATTATA-CAGCATGAAGTGAAGTCTTAAGGTATCTCCTCAC-TTA  980

seq1  TACGGAAAGTGACATTTTTAAGTTGGGGACTGATGTCAATGAGTAGGGTG  1048
       | |||||||||||  |   | || ||||  |||||| |||   |    |
seq2  GAGGGAAAGTGACAGGTAAGACTT-GGGAGAGATGTC-ATGGTCACCCAG  1028

seq1  CCCACGCACAGGAAGTTCCATAGAGAGCATCCTGAGTGAT  1088
        |||||||||||||||||  |||||||||||||||||||
seq2  ATCACGCACAGGAAGTTCCTAAGAGAGCATCCTGAGTGAT  1068