BAC Information

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BAC

Clone NameB6Ng01-056B21
Chromosome5 (Build37)9 (Build37)
Map Location 18,084,511 - 18,084,57679,227,863 - 79,228,979
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056B21.bB6Ng01-056B21.g
ACCDH878378DH878379
length9911,110
definitionDH878378|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B21, 5' end.DH878379|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,576)(79,227,863 - 79,228,979)
sequence
gaattctcaactgaagaacaccaaatggttgagaagcacctaaaaaaatg
ttcaacacccttagtcatcggggaaatccaaatcaaaacaaccctgagat
cccacctcacaccagtcagaacggatacgatcaaaaaatgaggtgatagc
agatgtttgcacagaaaagacatctttgtttgttgtggagaaggaggaac
actcctccattgctggtagaattgcaagctggtacaaccactctggaaat
cagtttggccgtttctcagaagattggacattgtactacctgaggaccca
gcaatacttctcctgggcatatacccagaagatgctccaacaggtaataa
ggacacatgctccactatgttcatagcagccttatttataatagccagaa
gctggaaagaacccaaatgtcccttaacagaagaatggatacagaaactg
tggtacatttccacaatggagtactactcagctataaaacaacaacaaca
acaacaacaatgaatttaggaaattcttaggcaactgtatagatctggag
gatatcatcctgagtgaggcaactcaatcataaaagaatacacatgatac
gcactcactgataagtagatattaggccagaaacttagaatacccaagat
acaattcacaaaaaacatgaaactcaagaagaaggaagaccaaagtatga
ataccttgatcctttctagaagggggaataaaatactcatggaaaaaagt
tagagacaaagtgtggaatagagactgaaggaaggaccagccagagactc
ccccacctggggatccatcccatatgcaatcaccaaacccaggcgatatt
gtggatgccaacaagagcctgctgacatgatcctgatatagctgtcccct
gagaggctctgccagtgcctgacaaaaacagaagagatgcttatagccat
ccattagactgagcacatggtcctcaatgagtagctagaga
gaattcaggaattccagaagaagcacaagtgtgtaaaagggaagaattta
tgtccacctttggactgttggcccatttctaagtaattggaatggtgggc
attgctgagttctacttgaatcatagtgacagaaagacaaagtctaaata
tccctagttcttaggaaaaaagcacaaaataactcataataataaccttg
aggagtcctaacatttttattcagtccacagaaggccacgtttaacctca
cccttacctctccactatctttcttttttaggattagatgtgcctttatt
gaaggagatatgccactgaggacaggcttttaggtttcagaaaacctgag
caggcattcctatctgcccctgcttgttgatcaagaggtaagtcttagct
gttcatactgccatgtctttcctctgccaccatgaaatctagttttttga
aacaataaacacaaataagtgatttattttataagtttccttagcaatga
tgtgtccatcacagctattgaaaagtaactaatacaattacttaatattg
taggatgagtggtatttttcagattatataaatcattaagttccaaatag
tactgtctcagtgatggcaaccataactgtcaacatcagccccatccttc
taccaccaagaacctcttgattttttaggggttgccacaatatggctctc
aagctctaacaataaccactctccttccactctccaaaatcccattcaat
ccttttatgtgttatggtcatcaattttatgacagattaccaatgtcaaa
aagggccctgtgtttcacccactcagctctattgtagctacagaataaag
acagtacttccatcctgtgttaatgacttgattctgtgatttgtagggga
aaggagactaaaaaccaaagactacacacactgagcatcagatgtaactg
tcctatgctgagtatgacagtaacacgtcttggccaatagttaaagagat
gcatgggcatcccgtgaaccaactgcagaaatggtacagccatagcctgg
atcacgtaagttgctggattgcaagggatctggccttttattcctaagtc
aggagaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084576
seq2: B6Ng01-056B21.b_380_445 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGA  66
      ||| ||||| ||||||
seq2  CTTATTACCTGTTGGA  66

seq1: chr9_79227863_79228979
seq2: B6Ng01-056B21.g_69_1178 (reverse)

seq1  GGCTTCTCCTGACTTTAGAATAAA--GCCAGATCACTTTGCAAACTCCAG  48
      |||||||||||||||  |||||||  |||||||| | ||||||  |||||
seq2  GGCTTCTCCTGACTTAGGAATAAAAGGCCAGATC-CCTTGCAA--TCCAG  47

seq1  CAACTCTACGTGACTCAGGCTATGGCTGTACCATTTTCTGCAGTTTGGTT  98
      ||||| |||||||  |||||||||||||||||| ||||||||| ||||||
seq2  CAACT-TACGTGATCCAGGCTATGGCTGTACCA-TTTCTGCAG-TTGGTT  94

seq1  CACGGGATGCCCATGCATCTCTTTAACTATTGGCC-AGACGTGTTACCTG  147
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  CACGGGATGCCCATGCATCTCTTTAACTATTGGCCAAGACGTGTTA-CTG  143

seq1  TCATACTCAGCATAGGACAGTTTACATCTGATGCTCAGTGTGTGTAGTCT  197
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TCATACTCAGCATAGGACAG-TTACATCTGATGCTCAGTGTGTGTAGTC-  191

seq1  TTTGGTTTTTAGTCTCCTTTCCCCTACAAATCAACAGAATCAAGTCATTA  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGGTTTTTAGTCTCCTTTCCCCTACAAATC-ACAGAATCAAGTCATTA  240

seq1  ACACAGGATGGAAGTACTGTCTTTATTCTGTAGCTACAATAGAGCTGAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGATGGAAGTACTGTCTTTATTCTGTAGCTACAATAGAGCTGAGT  290

seq1  GGGTGAAACACAGGGCCCTTTTTGACATTGGTAATCTGTCATAAAATTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAACACAGGGCCCTTTTTGACATTGGTAATCTGTCATAAAATTGA  340

seq1  TGACCATAACACATAAAAGGATTGAATGGGATTTTGGAGAGTGGAAGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATAACACATAAAAGGATTGAATGGGATTTTGGAGAGTGGAAGGAG  390

seq1  AGTGGTTATTGTTAGAGCTTGAGAGCCATATTGTGGCAACCCCTAAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTATTGTTAGAGCTTGAGAGCCATATTGTGGCAACCCCTAAAAAA  440

seq1  TCAAGAGGTTCTTGGTGGTAGAAGGATGGGGCTGATGTTGACAGTTATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGTTCTTGGTGGTAGAAGGATGGGGCTGATGTTGACAGTTATGG  490

seq1  TTGCCATCACTGAGACAGTACTATTTGGAACTTAATGATTTATATAATCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCACTGAGACAGTACTATTTGGAACTTAATGATTTATATAATCT  540

seq1  GAAAAATACCACTCATCCTACAATATTAAGTAATTGTATTAGTTACTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACCACTCATCCTACAATATTAAGTAATTGTATTAGTTACTTTT  590

seq1  CAATAGCTGTGATGGACACATCATTGCTAAGGAAACTTATAAAATAAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTGTGATGGACACATCATTGCTAAGGAAACTTATAAAATAAATC  640

seq1  ACTTATTTGTGTTTATTGTTTCAAAAAACTAGATTTCATGGTGGCAGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTGTGTTTATTGTTTCAAAAAACTAGATTTCATGGTGGCAGAGG  690

seq1  AAAGACATGGCAGTATGAACAGCTAAGACTTACCTCTTGATCAACAAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGGCAGTATGAACAGCTAAGACTTACCTCTTGATCAACAAGCA  740

seq1  GGGGCAGATAGGAATGCCTGCTCAGGTTTTCTGAAACCTAAAAGCCTGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGATAGGAATGCCTGCTCAGGTTTTCTGAAACCTAAAAGCCTGTC  790

seq1  CTCAGTGGCATATCTCCTTCAATAAAGGCACATCTAATCCTAAAAAAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGCATATCTCCTTCAATAAAGGCACATCTAATCCTAAAAAAGAA  840

seq1  AGATAGTGGAGAGGTAAGGGTGAGGTTAAACGTGGCCTTCTGTGGACTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGGAGAGGTAAGGGTGAGGTTAAACGTGGCCTTCTGTGGACTGA  890

seq1  ATAAAAATGTTAGGACTCCTCAAGGTTATTATTATGAGTTATTTTGTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGTTAGGACTCCTCAAGGTTATTATTATGAGTTATTTTGTGCT  940

seq1  TTTTTCCTAAGAACTAGGGATATTTAGACTTTGTCTTTCTGTCACTATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAAGAACTAGGGATATTTAGACTTTGTCTTTCTGTCACTATGA  990

seq1  TTCAAGTAGAACTCAGCAATGCCCACCATTCCAATTACTTAGAAATGGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAGAACTCAGCAATGCCCACCATTCCAATTACTTAGAAATGGGC  1040

seq1  CAACAGTCCAAAGGTGGACATAAATTCTTCCCTTTTACACACTTGTGCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCCAAAGGTGGACATAAATTCTTCCCTTTTACACACTTGTGCTT  1090

seq1  CTTCTGGAATTCCTGAATTC  1117
      ||||||||||||||||||||
seq2  CTTCTGGAATTCCTGAATTC  1110