BAC Information

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BAC

Clone NameB6Ng01-056G23
Chromosome5 (Build37)
Map Location 108,454,310 - 108,601,781
singlet/doubletdoublet
Overlap geneLOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
Upstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik
Downstream geneDr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056G23.bB6Ng01-056G23.g
ACCDH878591DH878592
length1,235962
definitionDH878591|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G23, 5' end.DH878592|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,454,310 - 108,455,541)(108,600,815 - 108,601,781)
sequence
gaattcaaagaccatctgaactatagagcacctgtgtcaaagcaggggct
ggtgctggaaagaaggctaagtgctaagaacacttgctgctcttgtagaa
tattcaggctcaattaccagtaaccatgttgaccatctccaaccacccat
aactctagctccagagaatccaataatgttttttggatttcttgggtacc
cacattcatacatgcatagacctacacacatactagttaattaataccag
aaacaggcttgatggtgtatgcctttaaccccagcactcaagaggcagag
gcaggcagatctttgtgttcaaggccagcacaggcagggctacatagaga
agctgtgtcttgaaaaacaaaaacaagaaaatacccccaaacaacaacaa
caacatacaaacaacaaaaccctgtaccactgctaatagaatatttttaa
aaacacaagaaagcacgtaggatttgcattagaaaacatgcttggaagaa
gccgtctcttctcctttaacaatatctaggcaagacaagatggctgagtt
aagtaaatgcagagttaaattctcagaactcacagtgaactcctgaaaat
tgtcttctgacttccacacgcattcgatggcacgtgcactcatagtcaca
cataaatgcacactttgatagttaaatagaagaatgacagtgactgtagc
ataagagcagctgggggacacggagttgagactaatgagatacaggctgg
tctgatatagcattttctcctgcttttcctttgcccatcccaccctcccc
acctgcccccatccccatgtttgacctttaagagtattacacacaactca
atttggctttgtgagttttattattcatttattttgagacagggtcacat
gtaaactttgaattcactatgtagtcatagtttgaactcctgatcttcct
gcgtcaaacttccaagtgctgggatcgcagcacacaccaccatgcccagc
tccacacctcatgattgcattgctttggaggcttccttcttacatggctg
ccttccctaatgcccttaagttcttgggtccaatttggcctcaattgggt
tttagattaatttataggcaaatagagagggttttgcttggtgcctgtag
gccacactacaagtggttggtggcccgggagaataaaaagacacacttga
atttctggaacctacagagactgtgagcgtaccac
gaattcaattaccaaacatctcaggctacaccaaggctactggtttctca
ccataaactgatggcaaagccctgttattcttttgcttgcctgttccttt
tctttataaagagagagataaagaaatagaataaagtttggatgattgga
aggtggaaaagatctgggaggaattaggggaaaggaaaagtataatcaga
atatattgtaaaaaaaaattccaatttaaaaagatttattttaaggggct
taggaaaaagtctctaatctatgaataaaaaacattcacaatatgagaag
aaagttttctcagagaaaaactgtaagaacttaattactagtagatttgc
actaaaaaaattttagaagttgtacaggcagaagaaatatgccatataga
aattaataagataaatatataacttttttaaaaagtaaatgatgagacaa
tgaaaacatgcattgttatcttttcagattataaccacactatcaaattc
acatgtaatgttttaaaatgagaattcatgagttataccaactgaagaaa
aactgctagaatctcagaaatctagagattaacatatttctgaggaggct
ctgatgttaggtaaaaatttgaaatcctctattaaaactcttccaatcac
aatctaagacctacaaccatgaattattatattattattattattattat
tattattattattatattaacttgtattttgttccatcaaatttgagaac
ttttagcttatgaggtagtattttcctactttcaatataaatcaacatac
atttcccaatatgattttaaagaattaaacttatatggtaccattttcca
aagccgtataaatctagatttcaatagtaacaaaccccatagcatagcac
tatacccaggtaaatccaacttacttcatttctagttggctagcatttga
agcttttctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108454310_108455541
seq2: B6Ng01-056G23.b_52_1286

seq1  GAATTCAAAGACCATCTGAACTATAGAGCACCTGTGTCAAAGCAGGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACCATCTGAACTATAGAGCACCTGTGTCAAAGCAGGGGCT  50

seq1  GGTGCTGGAAAGAAGGCTAAGTGCTAAGAACACTTGCTGCTCTTGTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGAAAGAAGGCTAAGTGCTAAGAACACTTGCTGCTCTTGTAGAA  100

seq1  TATTCAGGCTCAATTACCAGTAACCATGTTGACCATCTCCAACCACCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGCTCAATTACCAGTAACCATGTTGACCATCTCCAACCACCCAT  150

seq1  AACTCTAGCTCCAGAGAATCCAATAATGTTTTTTGGATTTCTTGGGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGCTCCAGAGAATCCAATAATGTTTTTTGGATTTCTTGGGTACC  200

seq1  CACATTCATACATGCATAGACCTACACACATACTAGTTAATTAATACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCATACATGCATAGACCTACACACATACTAGTTAATTAATACCAG  250

seq1  AAACAGGCTTGATGGTGTATGCCTTTAACCCCAGCACTCAAGAGGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTTGATGGTGTATGCCTTTAACCCCAGCACTCAAGAGGCAGAG  300

seq1  GCAGGCAGATCTTTGTGTTCAAGGCCAGCACAGGCAGGGCTACATAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGATCTTTGTGTTCAAGGCCAGCACAGGCAGGGCTACATAGAGA  350

seq1  AGCTGTGTCTTGAAAAACAAAAACAAGAAAATACCCCCAAACAACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCTTGAAAAACAAAAACAAGAAAATACCCCCAAACAACAACAA  400

seq1  CAACATACAAACAACAAAACCCTGTACCACTGCTAATAGAATATTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACAAACAACAAAACCCTGTACCACTGCTAATAGAATATTTTTAA  450

seq1  AAACACAAGAAAGCACGTAGGATTTGCATTAGAAAACATGCTTGGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGAAAGCACGTAGGATTTGCATTAGAAAACATGCTTGGAAGAA  500

seq1  GCCGTCTCTTCTCCTTTAACAATATCTAGGCAAGACAAGATGGCTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTCTTCTCCTTTAACAATATCTAGGCAAGACAAGATGGCTGAGTT  550

seq1  AAGTAAATGCAGAGTTAAATTCTCAGAACTCACAGTGAACTCCTGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGCAGAGTTAAATTCTCAGAACTCACAGTGAACTCCTGAAAAT  600

seq1  TGTCTTCTGACTTCCACACGCATTCGATGGCACGTGCACTCATAGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGACTTCCACACGCATTCGATGGCACGTGCACTCATAGTCACA  650

seq1  CATAAATGCACACTTTGATAGTTAAATAGAAGAATGACAGTGACTGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGCACACTTTGATAGTTAAATAGAAGAATGACAGTGACTGTAGC  700

seq1  ATAAGAGCAGCTGGGGGACACGGAGTTGAGACTAATGAGATACAGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGCAGCTGGGGGACACGGAGTTGAGACTAATGAGATACAGGCTGG  750

seq1  TCTGATATAGCATTTTCTCCTGCTTTTCCTTTGCCCATCCCACCCTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATAGCATTTTCTCCTGCTTTTCCTTTGCCCATCCCACCCTCCCC  800

seq1  ACCTGCCCCCATCCCCATGTTTGACCTTTAAGAGTATTACACACAACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCCATCCCCATGTTTGACCTTTAAGAGTATTACACACAACTCA  850

seq1  ATTTGGCTTTGTGAGTTTTATTATTCATTTATTTTGAGACAGGGTCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTTGTGAGTTTTATTATTCATTTATTTTGAGACAGGGTCACAT  900

seq1  GTAAACTTTGAATTCACTATGTAGTCATAGTTTGAACTCCTGATCTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTTGAATTCACTATGTAGTCATAGTTTGAACTCCTGATCTTCCT  950

seq1  GCGTCAAACTTCCAAGTGCTGGGATCGCAGCACACACCACCATGCCCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAAACTTCCAAGTGCTGGGATCGCAGCACACACCACCATGCCCAGC  1000

seq1  TCCACA-CTCATGATTGCATTGCTTT-GAGGCTTCC-TCTTACATGGCTG  1047
      |||||| ||||||||||||||||||| ||||||||| |||||||||||||
seq2  TCCACACCTCATGATTGCATTGCTTTGGAGGCTTCCTTCTTACATGGCTG  1050

seq1  CCTTCCCTAATGCCCTAAAGTTCTTTGGTCTCATTT-GCCTCTATTGTGT  1096
      |||||||||||||||| |||||||| ||||  |||| ||||| |||| | 
seq2  CCTTCCCTAATGCCCTTAAGTTCTTGGGTCCAATTTGGCCTCAATTG-GG  1099

seq1  TTTTAGATTTATTT-TATGCATAT-GAGTGGTTTTTGCTTGGTTGTCTTG  1144
      ||||||||| |||| || ||| || ||| || |||||||||||   | ||
seq2  TTTTAGATTAATTTATAGGCAAATAGAGAGGGTTTTGCTTGGT--GCCTG  1147

seq1  TATG-CACACTACAGTGTGTTTGGTGCCTGGGAAGATTAAAAAGACAACT  1193
      || | |||||||||  ||| |||||| |  || ||| ||||||||||   
seq2  TAGGCCACACTACA-AGTGGTTGGTGGCCCGGGAGAATAAAAAGACACAC  1196

seq1  TTGGATTTCCTGAAACTACAGATGACTGTGAGC-TACCAC  1232
      ||| |||||  ||| ||||||| |||||||||| ||||||
seq2  TTGAATTTCTGGAACCTACAGA-GACTGTGAGCGTACCAC  1235

seq1: chr5_108600815_108601781
seq2: B6Ng01-056G23.g_69_1030 (reverse)

seq1  TAGAG-AAAGCTTCAAATGCTAGCAAACTAGAAAATGAAGTAAGTTTGGA  49
      ||||| |||||||||||||||||| |||||| |||||||||||| |||||
seq2  TAGAGAAAAGCTTCAAATGCTAGCCAACTAG-AAATGAAGTAAG-TTGGA  48

seq1  TTTACCTGGGTATAAGTGCTTATTGCTATGGGGTTTTGTTACTATTGAAA  99
      ||||||||||||| ||||||   |||||||||| ||||||||||||||||
seq2  TTTACCTGGGTAT-AGTGCT--ATGCTATGGGG-TTTGTTACTATTGAAA  94

seq1  TCTAGATTTATACGGCTTTGGAAAATGGTACCATATAAGTTTTAATTCTT  149
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TCTAGATTTATACGGCTTTGGAAAATGGTACCATATAAG-TTTAATTC-T  142

seq1  TTAAAATCATATT-GGAAATGTATGTTTGATTTATATTGAAAGTAGGAAA  198
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TTAAAATCATATTGGGAAATGTATG-TTGATTTATATTGAAAGTAGGAAA  191

seq1  ATACTACCTCAT-AGCTAAAAGTTCTCAAATTTGATGGAACAAAATACAA  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATACTACCTCATAAGCTAAAAGTTCTCAAATTTGATGGAACAAAATACAA  241

seq1  GTTAATATAATAATAATAATAATAATAATAATAATAATAATATAATAATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATAATAATAATAATAATAATAATAATAATAATAATATAATAATT  291

seq1  CATGGTTGTAGGTCTTAGATTGTGATTGGAAGAGTTTTAATAGAGGATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGTAGGTCTTAGATTGTGATTGGAAGAGTTTTAATAGAGGATTT  341

seq1  CAAA-TTTTACCTAACATCAGAGCCTCCTCAGAAATATGTTAATCTCTAG  396
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTACCTAACATCAGAGCCTCCTCAGAAATATGTTAATCTCTAG  391

seq1  ATTTCTGAGATTCTAGCAGTTTTTCTTCAGTTGGTATAACTCATGAATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGATTCTAGCAGTTTTTCTTCAGTTGGTATAACTCATGAATTC  441

seq1  TCATTTTAAAACATTACATGTGAATTTGATAGTGTGGTTATAATCTGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAAAACATTACATGTGAATTTGATAGTGTGGTTATAATCTGAAA  491

seq1  AGATAACAATGCATGTTTTCATTGTCTCATCATTTACTTTTTAAAAAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAATGCATGTTTTCATTGTCTCATCATTTACTTTTTAAAAAAGT  541

seq1  TATATATTTATCTTATTAATTTCTATATGGCATATTTCTTCTGCCTGTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTATCTTATTAATTTCTATATGGCATATTTCTTCTGCCTGTAC  591

seq1  AACTTCTAAAATTTTTTTAGTGCAAATCTACTAGTAATTAAGTTCTTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTAAAATTTTTTTAGTGCAAATCTACTAGTAATTAAGTTCTTACA  641

seq1  GTTTTTCTCTGAGAAAACTTTCTTCTCATATTGTGAATGTTTTTTATTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTCTGAGAAAACTTTCTTCTCATATTGTGAATGTTTTTTATTCA  691

seq1  TAGATTAGAGACTTTTTCCTAAGCCCCTTAAAATAAATCTTTTTAAATTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGAGACTTTTTCCTAAGCCCCTTAAAATAAATCTTTTTAAATTG  741

seq1  GAATTTTTTTTTACAATATATTCTGATTATACTTTTCCTTTCCCCTAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTTTACAATATATTCTGATTATACTTTTCCTTTCCCCTAATT  791

seq1  CCTCCCAGATCTTTTCCACCTTCCAATCATCCAAACTTTATTCTATTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGATCTTTTCCACCTTCCAATCATCCAAACTTTATTCTATTTCT  841

seq1  TTATCTCTCTCTTTATAAAGAAAAGGAACAGGCAAGCAAAAGAATAACAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTCTCTTTATAAAGAAAAGGAACAGGCAAGCAAAAGAATAACAG  891

seq1  GGCTTTGCCATCAGTTTATGGTGAGAAACCAGTAGCCTTGGTGTAGCCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCCATCAGTTTATGGTGAGAAACCAGTAGCCTTGGTGTAGCCTG  941

seq1  AGATGTTTGGTAATTGAATTC  967
      |||||||||||||||||||||
seq2  AGATGTTTGGTAATTGAATTC  962