BAC Information

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BAC

Clone NameB6Ng01-056H04
Chromosome5 (Build37)
Map Location 18,661,817 - 18,663,006
singlet/doubletsinglet
Overlap genenone
Upstream geneGnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056H04.bB6Ng01-056H04.g
ACCDH878600DH878601
length1,1591,179
definitionDH878600|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H04, 5' end.DH878601|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaaaaaaaaaaaaaatcaatatacataaatctataataattat
ctccagaaatataagaacaacatttaataaaatttaacatttagataaca
aaatctctcaataggatagccatgggatatgtttattttaatatactgaa
ggcaatatgacataaatctatggataaaacacttagagatgaatctatgg
aaacaatatcttatacccagaacctgacatgttgtttgtttatgaccaga
gcagatgagcactatgaatcagagagaaagaaattattaaaatgttggta
taaagaacttaaaattaaaaaacacaaataaataccaataacttaaaaag
taatgagaataaagtaaaaaataatttatttacaatcaggatgattatct
gtcaagaatagttaagaatttattgaaaaaatcttactaatattagtatt
gggattaatctctattattatttattagtgtactttaattattatttcat
caccctcccttccaacccatttcaggttctctcctcctcctcacaggcct
tcctccctggccttggtcctgttctcaaattgattgcttctttgtctttg
attattatttttaacacacacacacacacatacatactcacacacacaca
cacacacacacacacacacacacacatactcacacacacacacacacaca
cactcacgttaatacaaagaggatttcagaaagaatgaaaatgcattaat
tcctacaaagaatattcaactctaaagccaacaagaaaatttccctccaa
agataatttttaaagtatttcagatattggtaaatttggtttaaagtcat
caagaatcattcttgacaaacttagaagatgcaataattctcacataaac
agagatcactgaatttctgaatgaaaaatagtatggtaaattacaaattg
tttaatttaagatgaaattcaacatcaatttaagttgcactaaatgtttg
gtgttggagaatataatcaaatttaaaagaagaattataataataaagac
tatgatatttcatgcatagattacaagcagagaaggcctttcctataaat
gtagtgattcttcaatgcatggaagttgagtggaaatccaggaagtgttt
gctcagtgt
gaattcagtcacacattatcactgcctgggcactataaacttctcaatca
agtccttttcatccctctcgttggtttctatctttaaataatagaagaaa
attaaattaataattttcaaataaaaatataaaaaattttaacaactgaa
aatgctaattaacaacctatttaagacataaatatcctgtgaggaactta
tgcctttttgtatatcagccttctgacaacatgcaatatcatagtattct
caaaagtatagagaaccatggggtggagatacaattactttttcctggta
gctaaggaagtagaatatttctttaaatgtttctcaggcattctggtttc
ctctattggaactccctatttagatatgcaccctatttttaaattggaat
tcctgttttattgacatctagcttcttgaggattttttaagatatatttt
ggatatgagaccgctatctgatatggagttaatacaaatgtttttttttc
tgattctgtaggctatcattttgtcctattggtagtgtcatttgccttac
agaagcctttcagtttcttggggtcccattagttaattgttaatcttagt
gtctgtgctatcagtgttctgttcagcaagttgtctctagtgcaaatgtg
ttcagggttcttccccacattctcttctattaggttcattgtgttttcag
tgttatgttgaggtctttgatccacttggactgcagttcttgtacatgca
gatatccagttagaacagtaccatttattgaagatgcttcccccaacccc
cggcacatcatgtatttctggcttatcaaaatcaagagtctagtgagtag
agttatgtttgggatctttgacttgattacatgatcaattgtttttatat
catattattcagtgttattactatagtctatagtacagcttgaataaggg
atggagatacctttggaagatctttttattgttcaggattgtttagctct
tctgggttcttaacaagatgaatacgtaagtgaagctcattctgaaaggt
atagagcaagggaacgcctcttcattaactgttgagatggcaaaggtgta
aaccactagaaatcagttgcactctccgaaaatggaactacctactcaag
aacacgctatcatgtctggtgacgcgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18661817_18663006
seq2: B6Ng01-056H04.b_44_1202

seq1  GAATTCTAAAAAAAAAAAAAAATCAATATACATAAATCTATAATAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAAAAAAAAAAAATCAATATACATAAATCTATAATAATTAT  50

seq1  CTCCAGAAATATAAGAACAACATTTAATAAAATTTAACATTTAGATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAATATAAGAACAACATTTAATAAAATTTAACATTTAGATAACA  100

seq1  AAATCTCTCAATAGGATAGCCATGGGATATGTTTATTTTAATATACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTCAATAGGATAGCCATGGGATATGTTTATTTTAATATACTGAA  150

seq1  GGCAATATGACATAAATCTATGGATAAAACACTTAGAGATGAATCTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATGACATAAATCTATGGATAAAACACTTAGAGATGAATCTATGG  200

seq1  AAACAATATCTTATACCCAGAACCTGACATGTTGTTTGTTTATGACCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATCTTATACCCAGAACCTGACATGTTGTTTGTTTATGACCAGA  250

seq1  GCAGATGAGCACTATGAATCAGAGAGAAAGAAATTATTAAAATGTTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAGCACTATGAATCAGAGAGAAAGAAATTATTAAAATGTTGGTA  300

seq1  TAAAGAACTTAAAATTAAAAAACACAAATAAATACCAATAACTTAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTTAAAATTAAAAAACACAAATAAATACCAATAACTTAAAAAG  350

seq1  TAATGAGAATAAAGTAAAAAATAATTTATTTACAATCAGGATGATTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGAATAAAGTAAAAAATAATTTATTTACAATCAGGATGATTATCT  400

seq1  GTCAAGAATAGTTAAGAATTTATTGAAAAAATCTTACTAATATTAGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAATAGTTAAGAATTTATTGAAAAAATCTTACTAATATTAGTATT  450

seq1  GGGATTAATCTCTATTATTATTTATTAGTGTACTTTAATTATTATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAATCTCTATTATTATTTATTAGTGTACTTTAATTATTATTTCAT  500

seq1  CACCCTCCCTTCCAACCCATTTCAGGTTCTCTCCTCCTCCTCACAGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCCTTCCAACCCATTTCAGGTTCTCTCCTCCTCCTCACAGGCCT  550

seq1  TCCTCCCTGGCCTTGGTCCTGTTCTCAAATTGATTGCTTCTTTGTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGGCCTTGGTCCTGTTCTCAAATTGATTGCTTCTTTGTCTTTG  600

seq1  ATTATTATTTTTAACACACACACACACACATACATACTCACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTTTAACACACACACACACACATACATACTCACACACACACA  650

seq1  CACACACACACACACACACACACACATACTCACACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATACTCACACACACACACACACACA  700

seq1  CACTCACGTTAATACAAAGAGGATTTCAGAAAGAATGAAAATGCATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGTTAATACAAAGAGGATTTCAGAAAGAATGAAAATGCATTAAT  750

seq1  TCCTACAAAGAATATTCAACTCTAAAGCCAACAAGAAAATTT-CCTCCAA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTACAAAGAATATTCAACTCTAAAGCCAACAAGAAAATTTCCCTCCAA  800

seq1  AGATAATTTTTAAAGTATTTTCAGATATTGGTAAATTTGGTTTAAAGTCA  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGATAATTTTTAAAGTA-TTTCAGATATTGGTAAATTTGGTTTAAAGTCA  849

seq1  TCAAGAATCATTCTTGACAAACTTTAGAAGATGCAATAATTCTCACATAA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAGAATCATTCTTGACAAAC-TTAGAAGATGCAATAATTCTCACATAA  898

seq1  ACAGAGAATCACTGAATTTCTGAATGAAAAATTAGTATGGTAAAATTACA  949
      |||||| |||||||||||||||||||||||| ||||||||| ||||||||
seq2  ACAGAG-ATCACTGAATTTCTGAATGAAAAA-TAGTATGGT-AAATTACA  945

seq1  AATTGTTTTAATTTAAGATGAAATTCAACATCAATTTAAGTTGCACTAAA  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTG-TTTAATTTAAGATGAAATTCAACATCAATTTAAGTTGCACTAAA  994

seq1  TGTTTGGTGTTGGAGAATATAAATTCAAAATTAAAATAGAAGGAAAATAA  1049
      ||||||||||||||||||||||  ||||| |||||  |||||   ||| |
seq2  TGTTTGGTGTTGGAGAATATAA--TCAAATTTAAA--AGAAG---AATTA  1037

seq1  TAATAATAAAGACTATGATATTTCCATGCATTAGAATTACAAGCAAGGAG  1099
      ||||||||||||||||||||||| |||||| ||| ||||||||||  |||
seq2  TAATAATAAAGACTATGATATTT-CATGCA-TAG-ATTACAAGCA--GAG  1082

seq1  AAAGGCCTTTCCCTATAAATGTAGCTGATTCTCCAAATGCATTGGAAAGT  1149
       ||||||||| ||||||||||||| ||||||| | |||||||  | ||||
seq2  -AAGGCCTTT-CCTATAAATGTAG-TGATTCTTC-AATGCAT--GGAAGT  1126

seq1  GGAAGGTTGGGAAATCACAAGGGAAAGTGTTTGCTCAGTGT  1190
       ||  ||  ||||||| ||   | |||||||||||||||||
seq2  TGA--GT--GGAAATC-CA---GGAAGTGTTTGCTCAGTGT  1159