BAC Information

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BAC

Clone NameB6Ng01-057B18
Chromosome5 (Build37)
Map Location 66,299,427 - 66,300,449
singlet/doubletsinglet
Overlap genenone
Upstream geneTlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh
Downstream geneLOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057B18.bB6Ng01-057B18.g
ACCDH879076DH879077
length1,016995
definitionDH879076|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B18, 5' end.DH879077|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatctatagaccaaacaggccttggactcacagagatctgcctt
cctctgactcccaagtgctgggattaaaggcatgcatcatcactgtctgg
cctctgtgcctttagttcatacttgaataagaggctaagaacctggaaac
actggtccagaccatcagggacagaatgaatgctgaagccttgaatgacc
aaggtgccatgttgcctatagttgatccatcattgcctctgtgtaaactc
cctttccaacagacaaggtctccttctgactagcaccagagtcccagtct
tttccatccccaacacaggactcagtgcgtggtgaattccaattcctcgg
tggtccattgctaccatagtctgagagccaaaggggttaggatgggggac
acacatatctttttagaagattgttgttccggccacaggcaggttacaat
ccctactttctttgtcttgagtgattatgacatcatgttatgattacata
atgaaataccaatagctgaataactcattaatcaagtgtgatagttactg
caatagcattgaaaagaaaaattgtcccagtatgagactaggagatcccc
tgttttgtgaggaatgtaattgatgactttctttctgggaaggaaaccct
tgctcccaatgaaatgcctgactattttctgacagagagcaatggcatga
agccttgttctgggaagcccattgtaccaggcagattgccagaccatagt
ccacgctgcctggccttcccttctcctacatatgctcttgcaaagtgtaa
atctttgaactggattcccagaggctcccctccctgcagaatgactgcaa
cacagtgatgggtcaccagaaaggagggagagctcgttctgatgggtttg
tggagtgagtgatcaggaccctgtgaaaattgttgtgtgatattcataac
tcagaatctcatcaaagacttgagaacattagcatgctggacatgtttta
atccaacttcttggga
gaattctagaaaacggagtggagagatgcctcaacaattaagagctcttt
ctgctcttgcagaggactggagtttggttcccagcactcatgtcagacag
cttgtaactccctgcaatctaagctcccgtagatcccataccttcttcta
gtctctgggggtgctagccctcatgacttgagtttgatacctagaacata
agagtggggagagataaatacatagacactgactcctttcatttagcttt
ctcctctcttatattctgggactccttgcctagggaacagtgctgtccac
aatgggatgttgtgtagtttggctatgcctggcccatagggagtagtact
gttaggaagtatggccttgctggaggaggtgtatcactgtcgggtgggct
ttgagagcctcatcctggctgaatgtggagaacggagtcccccttctgct
gcctgtggatgaagatgtagaactcccagctcctccacaactgtgtctgc
ctggacactgccatgcttcctacagtgacaataatgaactgaatctctga
aactgtaagacagcctcaattaaatgtttgcccttataagagttgccttg
gtcacagcaatgaaactgtaactaagatagaagttggtaccagggactgg
ggtattgttgtgataggcctgaccatgcttttgtttggagggatgtggat
ttcaggactttaggaagcagtggaatgctttaagtgggtgcttaatgggg
ccatcctagtaggaatgtggaagacattgggtgatgagcatgatttgaac
catagaagcctggcttctaaagtttcagaaggagattttagtatgtggcc
ttgagactgcttttgtgatatttaggtgagaacattggctgctttttgcc
cttgtctgaaaatcttcctgaggctgagtgaaaagactcagattaatcgc
atggacaaagaggtctcgaatcaaccaagtataaacttggtaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66299427_66300449
seq2: B6Ng01-057B18.b_42_1057

seq1  GAATTCCATCTATAGACCAAACAGGCCTTGGACTCACAGAGATCTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTATAGACCAAACAGGCCTTGGACTCACAGAGATCTGCCTT  50

seq1  CCTCTGACTCCCAAGTGCTGGGATTAAAGGCATGCATCATCACTGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTCCCAAGTGCTGGGATTAAAGGCATGCATCATCACTGTCTGG  100

seq1  CCTCTGTGCCTTTAGTTCATACTTGAATAAGAGGCTAAGAACCTGGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGCCTTTAGTTCATACTTGAATAAGAGGCTAAGAACCTGGAAAC  150

seq1  ACTGGTCCAGACCATCAGGGACAGAATGAATGCTGAAGCCTTGAATGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCAGACCATCAGGGACAGAATGAATGCTGAAGCCTTGAATGACC  200

seq1  AAGGTGCCATGTTGCCTATAGTTGATCCATCATTGCCTCTGTGTAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCCATGTTGCCTATAGTTGATCCATCATTGCCTCTGTGTAAACTC  250

seq1  CCTTTCCAACAGACAAGGTCTCCTTCTGACTAGCACCAGAGTCCCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAACAGACAAGGTCTCCTTCTGACTAGCACCAGAGTCCCAGTCT  300

seq1  TTTCCATCCCCAACACAGGACTCAGTGCGTGGTGAATTCCAATTCCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCCCCAACACAGGACTCAGTGCGTGGTGAATTCCAATTCCTCGG  350

seq1  TGGTCCATTGCTACCATAGTCTGAGAGCCAAAGGGGTTAGGATGGGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATTGCTACCATAGTCTGAGAGCCAAAGGGGTTAGGATGGGGGAC  400

seq1  ACACATATCTTTTTAGAAGATTGTTGTTCCGGCCACAGGCAGGTTACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATCTTTTTAGAAGATTGTTGTTCCGGCCACAGGCAGGTTACAAT  450

seq1  CCCTACTTTCTTTGTCTTGAGTGATTATGACATCATGTTATGATTACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTTCTTTGTCTTGAGTGATTATGACATCATGTTATGATTACATA  500

seq1  ATGAAATACCAATAGCTGAATAACTCATTAATCAAGTGTGATAGTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACCAATAGCTGAATAACTCATTAATCAAGTGTGATAGTTACTG  550

seq1  CAATAGCATTGAAAAGAAAAATTGTCCCAGTATGAGACTAGGAGATCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCATTGAAAAGAAAAATTGTCCCAGTATGAGACTAGGAGATCCCC  600

seq1  TGTTTTGTGAGGAATGTAATTGATGACTTTC-TTCTGGGAAGGAAACCCT  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTTTGTGAGGAATGTAATTGATGACTTTCTTTCTGGGAAGGAAACCCT  650

seq1  TGCTCCCAATGAAATGCCTGACTATTTTCTGACAGAGAGCAATGGCATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAATGAAATGCCTGACTATTTTCTGACAGAGAGCAATGGCATGA  700

seq1  AGCCTTGTTCTGGGAAGCCCATTGTACCAGGCAGATTGCCAGACCATAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTTCTGGGAAGCCCATTGTACCAGGCAGATTGCCAGACCATAGT  750

seq1  CCACGCTGCCTGGCCTTCCCTTCTCCTACAATATGCTCTTGCAAAGTGTA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCACGCTGCCTGGCCTTCCCTTCTCCTAC-ATATGCTCTTGCAAAGTGTA  799

seq1  AATCTTTGAACTGGATTCCCAGAGGCTCCCCTCCCTGCAGAATGACTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGAACTGGATTCCCAGAGGCTCCCCTCCCTGCAGAATGACTGCA  849

seq1  ACACAGTGAT-GGTCACCAGAAAGGAGGGAGAGCTCGTTCTGATGGGTTG  898
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  ACACAGTGATGGGTCACCAGAAAGGAGGGAGAGCTCGTTCTGATGGGTTT  899

seq1  GTGGAGTGAGTGAGTCAGGGACCCTGAG-AAAGTGTTGTGTGATATTCAT  947
      ||||||||||||| ||| |||||||| | ||| |||||||||||||||||
seq2  GTGGAGTGAGTGA-TCA-GGACCCTGTGAAAATTGTTGTGTGATATTCAT  947

seq1  AACTCAGAGTCTCCATCATAAGACCTTGAGAAACATCAGGCATGCTGGCA  997
      |||||||| ||| ||||| |||| |||||| ||||| | ||||||||| |
seq2  AACTCAGAATCT-CATCA-AAGA-CTTGAG-AACATTA-GCATGCTGG-A  991

seq1  CATGTCTTTAATCCAACTACTTGGGA  1023
      ||||| |||||||||||| |||||||
seq2  CATGT-TTTAATCCAACTTCTTGGGA  1016