BAC Information

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BAC

Clone NameB6Ng01-057L01
Chromosome5 (Build37)
Map Location 87,247,968 - 87,249,047
singlet/doubletsinglet
Overlap geneA730098D12Rik
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneLOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057L01.bB6Ng01-057L01.g
ACCDH879486DH879487
length7001,072
definitionDH879486|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L01, 5' end.DH879487|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaaattcttaggcaactggatagaactagaaaatattatcct
aagtgacataacccaataacaaaagaacacacatggtatgcattcactga
taagtggatattaggttagaagctcacaatacccaagatacaattcacag
accacatgaagctcaagaagaaggaagaccaaagtgtgagtgcttcagtc
cttcttggaaggagtaacaaaatactcatgggagaaaatatggagacaaa
gtatggagcagagactgaaggaaaggccatgcagagaatgccccacctga
ggatccagcccatatacaccattactaaatgcagacactattgtagatgc
caagaagtgcaagctgtcaggagcctgatatagctgtcttatgagaggct
ctgccagagcctgacagatacagaggcagatgctcacagccaaccattga
actgattatggggtccccaatgaggagttaaagaaaggactggaggagct
gaaggggtttgcagcctgatcggaagaacaacaataccaaacaaccagag
ctcccagggactaaaccaccaaccaaggagtacacatggagggacccatg
gctccagctgaagaaaatggccttatcagacattagtggaagcagaggcc
catcatgccatgaaggcatgatgccccagagtagggaggtggggggaggg

gaattcaaaggagaacttgtcctagtcttgttacccagcgcttaaacagt
aatcatgttttttccccttctcattgctcgaacttcctcagtctcactta
aaaatttatgtttgacactgtcacacatttcaagtaataaaaacgcatga
atcagagaagatatcaggtacttacttaacttacttaacttttttatgaa
aaaagctttccacaacggagggaaatttgtaaagcgaatataattttctt
cagtaaaacttagtatgtattttcaatgtactctggagtgctacactaag
tcctgtgacttgtgtaaattacttaagtcttattgtgatgtatctaaaca
tcagaacacaaaagattcacactagaaaacacacacatatgaacataacc
aaatctggtttccccacttctatgtcttcaattctatttttttaccattt
ctgctctagatcactctttttgtttactttaaaatttaccgggctggaga
gatggctcagcggttaagagcactgacttccaaggtccttcctgagttca
attcccagcaaccacatggtggctcacagccatctgtaatgggacctgat
gccctcttctggtgtgtctgaagacagctacagtatattcatatacataa
ataaatcttaaaaaaaagtaccactgaggtcttaatggcagtccatgtct
ttacttctgagaatgggggatcttcagcacacagaaaaatcacgcttagt
gtggaactttataaatacatatgaggactgaaactggattcagccccttg
ccattgtagccataaaatgatacaccccttgaacctctttagctgggaga
taagatgtatttaaaagtataaaatatgtatgtttttgtaaaaacaatga
aaatcttaaaaagacttatcaatggtcacacatacagtactcttctatat
aaattcagttaactaaattctcctctctctaattcttaaagcccacctca
tgaaatttacaataggaaaccttaaccaaataaataaataaactggaggg
tgaagagaaacagttatgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87247968_87249047
seq2: B6Ng01-057L01.g_69_1140 (reverse)

seq1  TTAGCATAACTTTGTTTCTC-TCA-CCTCCATGTTTTTATTTATTTATTT  48
      ||||||||||  |||||||| ||| ||||||    |||||||||||| ||
seq2  TTAGCATAAC--TGTTTCTCTTCACCCTCCA---GTTTATTTATTTA-TT  44

seq1  TGGTTAAGGTTTCCTATTTGTAAATTTCATTGAGTGTGCTTTAAGAATTA  98
      |||||||||||||||| |||||||||||||   ||| |||||||||||| 
seq2  TGGTTAAGGTTTCCTA-TTGTAAATTTCATGAGGTGGGCTTTAAGAATT-  92

seq1  AGAGAGAGGAGAATTTAGTTAACTGAATTTATATAGAAGAGTACTGTATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGAGAATTTAGTTAACTGAATTTATATAGAAGAGTACTGTATG  142

seq1  TGTGACCATTGATAAGTCTTTTTAAGATTTTCATTGTTTTTACAAAAACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCATTGATAAGTCTTTTTAAGATTTTCATTGTTTTTACAAAAACA  192

seq1  TACATATTTTATACTTTTTAAATTACATCTTATCTCCCAGCTAAAGAGGT  248
      ||||||||||||||||||  || |||||||||||||||||||||||||||
seq2  TACATATTTTATACTTTT--AAATACATCTTATCTCCCAGCTAAAGAGGT  240

seq1  TCAAGGGGTGTATCATTTTATGGCTACAATGGCAAGGGGCTGAATCCAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGTGTATCATTTTATGGCTACAATGGCAAGGGGCTGAATCCAGT  290

seq1  TTCAGTCCTCATATGTATTTATAAAGTTCCACACTAAGCGTGATTTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCTCATATGTATTTATAAAGTTCCACACTAAGCGTGATTTTTCT  340

seq1  GTGTGCTGAAGATCCCCCATTCTCAGAAGTAAAGACATGGACTGCCATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGAAGATCCCCCATTCTCAGAAGTAAAGACATGGACTGCCATTA  390

seq1  AGACCTCAGTGGTACTTTTTTTTAAGATTTATTTATGTATATGAATATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCAGTGGTACTTTTTTTTAAGATTTATTTATGTATATGAATATAC  440

seq1  TGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGGTCCCATTACAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGGTCCCATTACAGA  490

seq1  TGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGAAGGACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGAAGGACCT  540

seq1  TGGAAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCGGTAAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCGGTAAATT  590

seq1  TTAAAGTAAACAAAAAGAGTGATCTAGAGCAGAAATGGTAAAAAAATAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAAACAAAAAGAGTGATCTAGAGCAGAAATGGTAAAAAAATAGA  640

seq1  ATTGAAGACATAGAAGTGGGGAAACCAGATTTGGTTATGTTCATATGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGACATAGAAGTGGGGAAACCAGATTTGGTTATGTTCATATGTGT  690

seq1  GTGTTTTCTAGTGTGAATCTTTTGTGTTCTGATGTTTAGATACATCACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTAGTGTGAATCTTTTGTGTTCTGATGTTTAGATACATCACAA  740

seq1  TAAGACTTAAGTAATTTACACAAGTCACAGGACTTAGTGTAGCACTCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTAAGTAATTTACACAAGTCACAGGACTTAGTGTAGCACTCCAG  790

seq1  AGTACATTGAAAATACATACTAAGTTTTACTGAAGAAAATTATATTCGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTGAAAATACATACTAAGTTTTACTGAAGAAAATTATATTCGCT  840

seq1  TTACAAATTTCCCTCCGTTGTGGAAAGCTTTTTTCATAAAAAAGTTAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTTCCCTCCGTTGTGGAAAGCTTTTTTCATAAAAAAGTTAAGT  890

seq1  AAGTTAAGTAAGTACCTGATATCTTCTCTGATTCATGCGTTTTTATTACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGTAAGTACCTGATATCTTCTCTGATTCATGCGTTTTTATTACT  940

seq1  TGAAATGTGTGACAGTGTCAAACATAAATTTTTAAGTGAGACTGAGGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGTGACAGTGTCAAACATAAATTTTTAAGTGAGACTGAGGAAG  990

seq1  TTCGAGCAATGAGAAGGGGAAAAAACATGATTACTGTTTAAGCGCTGGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCAATGAGAAGGGGAAAAAACATGATTACTGTTTAAGCGCTGGGT  1040

seq1  AACAAGACTAGGACAAGTTCTCCTTTGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  AACAAGACTAGGACAAGTTCTCCTTTGAATTC  1072