BAC Information

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BAC

Clone NameB6Ng01-057O17
Chromosome5 (Build37)
Map Location 82,604,689 - 82,605,732
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057O17.bB6Ng01-057O17.g
ACCDH879638DH879639
length1,2711,037
definitionDH879638|Mus musculus domesticus DNA, BAC clone: B6Ng01-057O17, 5' end.DH879639|Mus musculus domesticus DNA, BAC clone: B6Ng01-057O17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaacacatcaaaatgatcatccatcatggtcaagtaggcttc
atctcagggatgcaggaatggtttaatatatggaaatcaatcaactcaat
ccactatataaataaactcaaagacaaaaaaccacatgatcctctcgtta
gatgctgagaaatcatttgaccgaatctaccacccattcattataaaagt
cttggaaagatcaggaattcaaggcccatacctaaacataataaaagcat
tatacagcaaaccagtagccaacatcaaactaaagggagagaaacttgaa
gcaaagccactaaaattcagaactagacaaggctgcccactttctcccta
cctattcaatatagtacttgaaatcctaaccagagcaattagacaacaaa
aggagatcaaggggatacaaattggaaaggaagaagtcaaaatatcacta
tttgcaggtgatatgatagtatatataaatgaccctaaaaattccaccac
agactcctaaacctgataaacagcttcattgcaatagctggatataaact
ttactcaaacaaatcagtggcctttctctacaaaaggataaacaggctga
gaacaaaattagttaaacaacacccttcacaatagtcacaaataatataa
aatatcttggtgtgactccaaggaagtgaaaaatctgtatgataagaact
tcaagtctctgaagaaagtaattgaagaaaatttcagaagattgaaagaa
ctcccattctcgtgcattggcaggattaatagagtgaaatggctattttg
ctaaaagcaatctacagattcaatgcaatccccatcaaattccaactcaa
attttcacagagttagaaagtgcaatttgcaaattcatctgaattacaca
aacctaatctagcaaaaccattctcacataaaagacctctggtggaatga
ccatgcctgacctcagctgtactatagagcattatgaaaaatctgcatgg
tactggtacaatgacagacaggtagatcatggaatagaatggagacccag
aaatgaatccaccatcgttcatcccttatcttgacaaaggagctaaacat
cggtaggcgaaaaaaccagcatttcaacaaatgtggctgtcactgcgtga
tctgtggagagtacaattgatcaattatcctggcagctcagtctatggat
cagatccataccgaaccgtaacctaagagaccggaagactcaaaaaggtg
cacagggggaattctgaccag
gaattccatttataacttttaattttaaaatttttgatttgaataatttc
tattattttcttattatagactttgaaatgttaaataactttaatgccta
agaatgtatcatgcctgtaataagtatgcatttctgaaaaatacttgtga
tttttaataaaaaagcctattactgtctgcttatttatgttaaggtcctt
tgtaggggtaaattaaaaactgttgtggattttgctgaaagcaactgaac
aaccactgtgcatataatgaatgaaagaagaaaagtgcatactgattaaa
ggaatatgatatcattgagtataattattttattttcactcccaaagaaa
ttttaattgttttctcccttcacatgaagtttcgacaaagagatctcagc
tccaattattatccaagactatatgcaaagattaaagtatgtaaggaata
tggcatttctgattatatgtaatacattttcaaacaacttacagcaaacc
cagcaaatacaaaatggccaaataattgtgttatttgatgacaagtcatt
caatttcaactgtacttacctaccctttttttttttttttttttttttgg
cttgcctataacagccaactgtttcattaacagcatttctaacatttttt
ttctcagtattgaaaacattacttgaagcaaaagatcagatatatgtcta
gcatttaaggagttcaatgaaatgctgttaaaaagaaaacacaaaacaga
aaggaaatttttgcttttgttctttatgactgtagagaagaaaagctagc
tttgtttttttgtctggtagagtaacttcctacataaaatctccctgtag
ctaagccttcctgaacaaagttagattaagatttcctgggccatttctgc
tgtggattttttaaagaaaaaattctaggttgaattttccttcactttaa
ataaattattatttctttgtgtgcagttgaagatttaactttcatgagtt
aactatagaaaggggttggagaatatataagtacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82604689_82605732
seq2: B6Ng01-057O17.g_69_1105 (reverse)

seq1  CCTGTAACTTATAATTACCTCAACACCTTTCTA-GTTTAACTCATTGAAA  49
      ||||| |||||||  | |  |||| ||||||||   |||||||| |||||
seq2  CCTGT-ACTTATATATTCTCCAACCCCTTTCTATAGTTAACTCA-TGAAA  48

seq1  GTTAAAATCTTTCAACTGCACACAAAGAAAATATATATTTTATTTTAAAG  99
      ||| ||||| ||||||||||||||||| ||||| ||| |||| |||||||
seq2  GTT-AAATC-TTCAACTGCACACAAAG-AAATA-ATAATTTA-TTTAAAG  93

seq1  TTGAAGGAAAATATCAACCTAGATTTTTTTCTTTTAAAAAATCACAGCAG  149
       ||||||||||| |||||||||| |||||||||| |||||  ||||||||
seq2  -TGAAGGAAAAT-TCAACCTAGAATTTTTTCTTTAAAAAATCCACAGCAG  141

seq1  AAATGG-CCAGGAAATCTTAATCTAACTTTGTTCAGGTA-GCTTAGCTAC  197
      |||||| |||||||||||||||||||||||||||||| | ||||||||||
seq2  AAATGGCCCAGGAAATCTTAATCTAACTTTGTTCAGGAAGGCTTAGCTAC  191

seq1  AGGGAGAATTTATGTAGGAAGTTTACTCTACCAGACAAAAAATACAAAGC  247
      ||||||| ||||||||||||| |||||||||||||||||||| |||||||
seq2  AGGGAGATTTTATGTAGGAAG-TTACTCTACCAGACAAAAAA-ACAAAGC  239

seq1  TAGCTTTTCTTCTCTACAGTCATAAAGAACAAAAGC-AAAATTTCCTTTC  296
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGCTTTTCTTCTCTACAGTCATAAAGAACAAAAGCAAAAATTTCCTTTC  289

seq1  TGTTTTGTGTTTTCTTTTTAACAGCATTTCATTGAACTCCTTAAATGCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGTTTTCTTTTTAACAGCATTTCATTGAACTCCTTAAATGCTA  339

seq1  GACATATATCTGATCTTTTGCTTCAAGTAATGTTTTCAATACTGAGAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATATCTGATCTTTTGCTTCAAGTAATGTTTTCAATACTGAGAAAA  389

seq1  AAAATGTTAGAAATGCTGTTAATGAAACAGTTGGCTGTTATAGGCAAGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTAGAAATGCTGTTAATGAAACAGTTGGCTGTTATAGGCAAGCC  439

seq1  AAAAAAAAAAAAAAAAAAAAAAAGGGTAGGTAAGTACAGTTGAAATTGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAGGGTAGGTAAGTACAGTTGAAATTGAA  489

seq1  TGACTTGTCATCAAATAACACAATTATTTGGCCATTTTGTATTTGCTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTCATCAAATAACACAATTATTTGGCCATTTTGTATTTGCTGGG  539

seq1  TTTGCTGTAAGTTGTTTGAAAATGTATTACATATAATCAGAAATGCCATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTAAGTTGTTTGAAAATGTATTACATATAATCAGAAATGCCATA  589

seq1  TTCCTTACATACTTTAATCTTTGCATATAGTCTTGGATAATAATTGGAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACATACTTTAATCTTTGCATATAGTCTTGGATAATAATTGGAGC  639

seq1  TGAGATCTCTTTGTCGAAACTTCATGTGAAGGGAGAAAACAATTAAAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTCTTTGTCGAAACTTCATGTGAAGGGAGAAAACAATTAAAATT  689

seq1  TCTTTGGGAGTGAAAATAAAATAATTATACTCAATGATATCATATTCCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGAGTGAAAATAAAATAATTATACTCAATGATATCATATTCCTT  739

seq1  TAATCAGTATGCACTTTTCTTCTTTCATTCATTATATGCACAGTGGTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTATGCACTTTTCTTCTTTCATTCATTATATGCACAGTGGTTGT  789

seq1  TCAGTTGCTTTCAGCAAAATCCACAACAGTTTTTAATTTACCCCTACAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCTTTCAGCAAAATCCACAACAGTTTTTAATTTACCCCTACAAA  839

seq1  GGACCTTAACATAAATAAGCAGACAGTAATAGGCTTTTTTATTAAAAATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTAACATAAATAAGCAGACAGTAATAGGCTTTTTTATTAAAAATC  889

seq1  ACAAGTATTTTTCAGAAATGCATACTTATTACAGGCATGATACATTCTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATTTTTCAGAAATGCATACTTATTACAGGCATGATACATTCTTA  939

seq1  GGCATTAAAGTTATTTAACATTTCAAAGTCTATAATAAGAAAATAATAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAAAGTTATTTAACATTTCAAAGTCTATAATAAGAAAATAATAGA  989

seq1  AATTATTCAAATCAAAAATTTTAAAATTAAAAGTTATAAATGGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCAAATCAAAAATTTTAAAATTAAAAGTTATAAATGGAATTC  1037