BAC Information

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BAC

Clone NameB6Ng01-058A14
Chromosome5 (Build37)
Map Location 14,933,589 - 15,155,389
singlet/doubletdoublet
Overlap geneLOC624245, Speer8-ps1, Speer4c, Speer4d
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A14.bB6Ng01-058A14.g
ACCDH879725DH879726
length1,2371,055
definitionDH879725|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A14, 5' end.DH879726|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,154,130 - 15,155,389)(14,933,589 - 14,934,658)
sequence
gaattcagtccaatttctcttttttaaccacttcatactaatttacttat
cttcatagtaaggaagaatatgtcttccttgtgtatttaaaattatgaga
ttagatactgatattggacagaaggtaattgggttcataagaagtgatac
ataatagaaaagaacatgttcatggatttggagtcaggactatgctgtgt
attggttattgaaaattaatatcagagtgacacagttgtgtgtctttagg
aagatgactggtgggagacactgatcctaaaatgcctttgtattttagtc
tattttcctagaaaaacataggaaaaaagagtatattggggtacatgcag
gaaacaggtcagggagccattaaatattcccagaggaaaagtttcaacca
gttgctaaaagtgttttaccaggtgggatggaagatatcctttcaaatac
aattggtgtgaaatgggtgagcgaaagctttacctattcatcctctttcc
actttctctctactttggggttactcaaagaatcccaaaatctttccaca
aaaatctgggtttctacagagcagagattggaaaacacgttatgaaaaca
caggcagagttcagttaagggcctcacttgagtggaggaaagcaggaaag
gtttaggggagcagagaagttatttttcagggcctgaggatataaaaccc
caggtgtcttgcgagagaacagaatactttggtggtatcccagctggaaa
gagatggtgtgtgcaaatcaggataatagcaagaaggttagtgacataga
aagatattctacagaaagtgttaattgagggaaactactactgtcctgga
gttcgcagcagcagagctgtccctttttttaaattattagatattttctt
tatttacatttcaaatgttatcccctttcctggtctcctcactgaaaagc
ccctattccattcttccatcccctgctcaccaactcacccactcccactt
cctgtcctgtattttccctacactggggcattgagccttaacggacaagg
cctcttcttccatgatgtccaacaagtcatccctctaattcaatgtgtgg
gctggagcattgttcctcaaggttagcttggctcatgtttagttcctggg
atctgggaaacgtcatattgtatatccccatagggctgcaacacactcca
ctgttggttccttctcctcaatccattgggaacttgt
gaattctaggtctgcagcaggggacagaacacctgaataaggaagatggt
ctcaagagtcactacttgcaaatcaatttttattcataagaaatagaatt
tttaaaaaataggttttaaaagttcaattaatatagagataaaggcaaaa
acaaacaatgaaatacaagaacaagaacatataacttctaaataacataa
caataactcaaagaacaaaaataaaaacttaaaccaaaactctaaaggaa
aattattgttcagctgctttcgctttctgcacttttagcagcacagccct
ccagcctgctgctcctcttggacactaggtatcagtgcagccgcctcagt
tctctgccaagagacgttgtctgaagagaaaagggaacaacgccctgaat
cagccatggcttcctagtaaaggcctattgaccctaagaaaatgaattat
atggaagaagattcatccgaggaagattgtgggtgctggagatggtgctc
agcaggggcctcctggcctggcaactcattctgcaggatgctgtcttctt
cagctgtggccaatcccagctctcttgcagtttctgagacctgggagagg
aaggcagttactaagacacaggagtggaggagacaggcatggcagctgtg
aggctactgcctcctaccacctcaactgtacttgacagtcaacattaata
ttttaactgaagttattgatgttaaatctaaagacagggcaaaatattca
acaacagtcacaaaaacatggactaacaaagatcaactcacgcttctatc
agttccaaccaaaaacatggcaaaggaagagacctcagtggattacagga
agaaaggagaaggcacagacaccagatcaatgataatgagaagcactcat
tgacatttgtacttggctctaatccctccaagtgcagacacatgggatgt
catagactctgctgtctctgtctagaccagatcttcactcaactctgcat
agcattcactatcatgagacatgcaagatgtgacatgtattcacctgtca
ccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15154130_15155389
seq2: B6Ng01-058A14.b_50_1286 (reverse)

seq1  ACAAGTTCCCCAATGGA-GGAGTTAGAGAGAGGACCAAAGAAGCTGAAGT  49
      ||||||| |||||||||  |||   |||| |||| | || |   || |||
seq2  ACAAGTT-CCCAATGGATTGAG---GAGA-AGGAACCAACA--GTGGAGT  43

seq1  GGTTTGCAGCCCCATAGGAGGAATAACAATATGAACAGTAATCCCAGATT  99
      |  |||||||||  || | |||   |||||||||   ||  |||||||  
seq2  GTGTTGCAGCCC--TATGGGGATATACAATATGA--CGT-TTCCCAGA--  86

seq1  TCCCAGGAACTAAACCATGAACCAAAGCATACACTTGGAGGGAACAATGG  149
      |||||||||||||| ||||| || |||| ||  ||||   |||||||| |
seq2  TCCCAGGAACTAAA-CATGAGCC-AAGC-TAACCTTG--AGGAACAAT-G  130

seq1  CTCCAG-CCACACA-TGAAATAGA-GGATGACTTTGTTGGGCATCAATGG  196
      |||||| ||||||| |||| |||| ||||||| ||||||| |||| ||||
seq2  CTCCAGCCCACACATTGAATTAGAGGGATGAC-TTGTTGGACATC-ATGG  178

seq1  GAGGAGAGGCCCTTGGTCCCGTTAAGGCTCAATGCCCCAGTGTAGGGGAA  246
       || ||||| |||||   ||||||||||||||||||||||||||||| ||
seq2  AAGAAGAGG-CCTTG--TCCGTTAAGGCTCAATGCCCCAGTGTAGGGAAA  225

seq1  TAACAGGACAGGGAAGTCGGAGTGGGTGAGTTGGTGAGCAGGGGATGGGA  296
        |||||||| |||||| |||||||||||||||||||||||||||||| |
seq2  ATACAGGACA-GGAAGTGGGAGTGGGTGAGTTGGTGAGCAGGGGATGGAA  274

seq1  GAATGGATTAGGGGCTTTTCAGTGAGGGGACCAGGAAAGGGGATAACATT  346
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATGGAATAGGGGCTTTTCAGTGAGGAGACCAGGAAAGGGGATAACATT  324

seq1  TGAAATGTAAATAAAGAAAATATCTAATAATTTAAAAAAAGGGACAGCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTAAATAAAGAAAATATCTAATAATTTAAAAAAAGGGACAGCTC  374

seq1  TGCTGCTGCGAACTCCAGGACAGTAGTAGTTTCCCTCAATTAACACTTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGCGAACTCCAGGACAGTAGTAGTTTCCCTCAATTAACACTTTC  424

seq1  TGTAGAATATCTTTCTATGTCACTAACCTTCTTGCTATTATCCTGATTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATATCTTTCTATGTCACTAACCTTCTTGCTATTATCCTGATTTG  474

seq1  CACACACCATCTCTTTCCAGCTCGGATACCACCAAAGTATTCTGTTCTCT  546
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACACACCATCTCTTTCCAGCTGGGATACCACCAAAGTATTCTGTTCTCT  524

seq1  CCCAAGACACCTGGGGTTTTATATCCTCAGGCCCTGAAAAATAACTTATC  596
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGCAAGACACCTGGGGTTTTATATCCTCAGGCCCTGAAAAATAACTTCTC  574

seq1  TGCTCCCCTAAACCTTTCCTGCTTTCCTCCACTCAAGTGAGGCCCTTAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCTAAACCTTTCCTGCTTTCCTCCACTCAAGTGAGGCCCTTAAC  624

seq1  TGACCTCTGCGTGTGTTTTCATAACTTGTTTTCCAATCTCTGCCCTGTAG  696
      ||| |||||| |||||||||||||| ||||||||||||||||| ||||||
seq2  TGAACTCTGCCTGTGTTTTCATAACGTGTTTTCCAATCTCTGCTCTGTAG  674

seq1  AAACCCAGATTTTGGTGGAAAGGTTTTGGGATTCTTTGAGTAACCCCAAA  746
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  AAACCCAGATTTTTGTGGAAAGATTTTGGGATTCTTTGAGTAACCCCAAA  724

seq1  GTAGAGAGAAAGTGGAAAGAGGATGAATAGTTAAAGCTTTCGCTCACCCA  796
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAGAGAGAAAGTGGAAAGAGGATGAATAGGTAAAGCTTTCGCTCACCCA  774

seq1  TTTCACACCAATTGTATTTGAAAGGATATCTTTCATCCCATCTGGTAAAA  846
      |||||||||||||||||||||||||||||||| ||||||| ||||| |||
seq2  TTTCACACCAATTGTATTTGAAAGGATATCTTCCATCCCACCTGGT-AAA  823

seq1  ACACTTTTAGCAACTGGTTGAAACTTTTCCTCTGGGAATACTTAATGGCT  896
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACACTTTTAGCAACTGGTTGAAACTTTTCCTCTGGGAATATTTAATGGCT  873

seq1  CCCAGACCTGTTTCCTGGATGTACCCCAATATATTCTTTTTTCCTATGTT  946
      ||| ||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CCCTGACCTGTTTCCTGCATGTACCCCAATATACTCTTTTTTCCTATGTT  923

seq1  TTTCTAGGAAAATAGAGTAAAATACAGAAGGCATTTTAGGATCAGTGTCT  996
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TTTCTAGGAAAATAGACTAAAATACA-AAGGCATTTTAGGATCAGTGTCT  972

seq1  CCCACCAGTCATCTTCCTAAAGACACACAACTGTGTCACGCTGATATTAA  1046
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCACCAGTCATCTTCCTAAAGACACACAACTGTGTCACTCTGATATTAA  1022

seq1  TTTTCAA-AACCAATACACAGCATAGTCCTGACTCCAAATCCATGAACAT  1095
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATAACCAATACACAGCATAGTCCTGACTCCAAATCCATGAACAT  1072

seq1  GTTCTTTTCTATTATGTATCACTTCTTACGAACCCAATTACCTTCTGACC  1145
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GTTCTTTTCTATTATGTATCACTTCTTATGAACCCAATTACCTTCTGTCC  1122

seq1  AATATCAGTATCTAATCTCATAATTTTAAATACACAAGGAAGACATATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGTATCTAATCTCATAATTTTAAATACACAAGGAAGACATATTC  1172

seq1  TTCTTTACTATGAAGATAAGTAAATTAGTATGAAGTGGTTAAAAAAGAGA  1245
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTATGAAGATAAGTAAATTAGTATGAAGTGGTTAAAAAAGAGA  1222

seq1  AATTGGACTGAATTC  1260
      |||||||||||||||
seq2  AATTGGACTGAATTC  1237

seq1: chr5_14933589_14934658
seq2: B6Ng01-058A14.g_69_1121

seq1  ATTCTAGGTCTGCAGCAGGAGACAGAACACCTGAATAAGGAAGATGGTCT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTCTAGGTCTGCAGCAGGGGACAGAACACCTGAATAAGGAAGATGGTCT  50

seq1  CAAGAGTCACTACTTGCAAATCAATTTTTATTCATAAGAAATAGAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCACTACTTGCAAATCAATTTTTATTCATAAGAAATAGAATTTT  100

seq1  TAAAAAATAGGTTTTAAAAGTTCAATTAATATAGAGATAAAGGCAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAGGTTTTAAAAGTTCAATTAATATAGAGATAAAGGCAAAAAC  150

seq1  AAACAATGAAATAAAAGAACAAGAACATATAACTTCTAAATAACGTAACA  200
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  AAACAATGAAATACAAGAACAAGAACATATAACTTCTAAATAACATAACA  200

seq1  ATAACTCAAAGATCAAAAATAAAAACTTAAACCAAAACTCTAAAGGAAAA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAAAGAACAAAAATAAAAACTTAAACCAAAACTCTAAAGGAAAA  250

seq1  TTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTTAGCAGCACAGCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTTAGCAGCACAGCCCTCC  300

seq1  AGCCTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGCTCCTCTTGGACACTAGGTATCAGTGCAGCCGCCTCAGTTC  350

seq1  TCTGCCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCCTGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGAGACGTTGTCTGAAGAGAAAAGGGAACAACGCCCTGAATCA  400

seq1  GCCATGGCTTCCTTGTAAAGGCCTATTCACCCTAAGAAAATGAATTATAT  450
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  GCCATGGCTTCCTAGTAAAGGCCTATTGACCCTAAGAAAATGAATTATAT  450

seq1  GGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGATTCATCCGAGGAAGATTGTGGGTGCTGGAGATGGTGCTCAG  500

seq1  CAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCTCCTGGCCTGGCAACTCATTCTGCAGGATGCTGTCTTCTTCA  550

seq1  GCTGTGGCCAATCCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGAGGAA  600
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGTGGCCAATCCCAGCTCTCTTGCAGTTTCTGAGACCTGGGAGAGGAA  600

seq1  GGCAGTTACTAAGACACAGGAGTGGAGGAGACAGGCATGGCAGCTGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTACTAAGACACAGGAGTGGAGGAGACAGGCATGGCAGCTGTGAG  650

seq1  GCTACTGCCTCCTACCACCTCAACTGTACTTGACAGTCAACATTAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGCCTCCTACCACCTCAACTGTACTTGACAGTCAACATTAATATT  700

seq1  TTAACTGAAGTTATTGATGTTAAATCTAAAGACAGGGCAAAATATTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAAGTTATTGATGTTAAATCTAAAGACAGGGCAAAATATTCAAC  750

seq1  AACAGTCACAAAAACATGGACTGACAAAGATCAACTCAGGCTTCTATCAG  800
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  AACAGTCACAAAAACATGGACTAACAAAGATCAACTCACGCTTCTATCAG  800

seq1  TTCCAACCAAAAACATGGCAAAGGAAGAGACCTCAGTGGATTACAGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCAAAAACATGGCAAAGGAAGAGACCTCAGTGGATTACAGGAAG  850

seq1  AAAGGAGAAGGGCACAGGATACCAGATCAATGATAATGAGAAGCACTCAT  900
      ||||||||| |||||| || ||||||||||||||||||||||||||||| 
seq2  AAAGGAGAA-GGCACA-GACACCAGATCAATGATAATGAGAAGCACTCA-  897

seq1  TTGACATTTGTACTTGGCTCTAATCCCTCCAAGGTGCAGACACATGGGAT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGACATTTGTACTTGGCTCTAATCCCTCCAA-GTGCAGACACATGGGAT  946

seq1  GTCATAAGACCTCTGCCTGTCTCCTGTCTAAGGACCCAGATC-TCACTCA  999
      ||||| ||| ||||| |||||| |||||||  || ||||||| |||||||
seq2  GTCAT-AGA-CTCTG-CTGTCT-CTGTCTA--GA-CCAGATCTTCACTCA  989

seq1  AACCTCTGCATAGCATTCCACCTATCATGAGGACATGCAAGAATGTGACA  1049
      |  |||||||||||||||   ||||||||| |||||||||| ||||||||
seq2  A--CTCTGCATAGCATTC--ACTATCATGA-GACATGCAAG-ATGTGACA  1033

seq1  TGTTATTCACCTGTCACCCTG  1070
      || ||||||||||||||||||
seq2  TG-TATTCACCTGTCACCCTG  1053