BAC Information

Click to search

BAC

Clone NameB6Ng01-058F04
Chromosome5 (Build37)
Map Location 75,562,984 - 75,693,754
singlet/doubletdoublet
Overlap genePdgfra
Upstream geneRasl11b, Scfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, LOC100039125
Downstream geneLOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058F04.bB6Ng01-058F04.g
ACCDH879933DH879934
length1,095584
definitionDH879933|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F04, 5' end.DH879934|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,562,984 - 75,564,077)(75,693,171 - 75,693,754)
sequence
gaattctttcttgcataagcctcttactatttggttcctattcttgaata
tgcagccctaagaagcaaacacaccccagggggttggaggtctagattaa
tttcagtaacttaagaatcaagtgatttcagttttgaaggaagactatag
ttaaagaggctaaaacttcttccctttgatgtgaggggttcgttagcctg
acttgcaaagtctcggggaggggggtcctggtggccgaattttaggtggg
gactttacacggacatggagcagaagcaagaaattgtcacttgcctcttg
ttacaaacttattttgttctgagctctgggaggtgctacgaataactggg
ggagggctggagagatggctcagtgtttaagagcactgactgctcttcca
aaggtcctgaattcaattcccagaaaccacatggtggctcacaaccatct
gtaatgggatttgatgccctctcctggtgtgtctgaagacagcgacagta
acagtgtacttacatacataaaatagataaatcttaaaaaaaattaaaaa
gaataactgagaggcacagaaaagaagttacagccaggggcacggagact
ttcagtggcttgaaagagtgcagccacagtcatacagcccaggcatgtgg
tgttcaggttaaaagagactgagctttaccatcgttgttattttgtattt
ctgttatatcctaagttgtgtaagactcaaagtccaggctccgtagacgg
tccggctttttgcctccattacactggtttggacatgattttttcatcat
ttttaacggccctgattcagctacaggttttactttgagatcccgactgt
actgtattttctttgtcatctcatcacagcaacgtcagaactgaatctgg
agatggacgcacgccagactgttttataaggcaggagaaacgatcgttgt
gacctgtgccgtctttaacaacgaggtcgttgactgcaggtgacttactc
tggtagaaatggtgggtactctgggataaggagctcacggaaccctcacc
acaggacttgaactctccactcaaaagtgtttcttcttggatggg
gaattccaggccagactggcctacagagttagaccttattcaaaaatcca
aaccaacaaactgtaaggtctcacattcaccaatgtcttctcagcacgtg
atataaaacctggcacttaataggcaattaacaaagccagagacagaata
caaacaaggtcatattcttaatatccttacagtccattgaggagaaaaaa
cacaagaccaattacatataatcccatcatcagagatggtggttattcaa
tatttgatgacccccaattttcttccactacacatacagataaaaacaca
cagagaaatgtagcaacaaaaatatttttttcaatgctgagaatacagcc
cagagccctacacaagctaggtgggttctctctctctctcagctatttcc
ctaggccccaaaattgcatattttaaacaaattgcaattgtaagatacat
acatactatttgtaatctgctcatttttttctcctttctttttaaaaatc
ccaatacactataggtactattccatgtaaatacattttaattaataatc
aattaatttgtgtgtgtatgtgatgtgatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_75562984_75564077
seq2: B6Ng01-058F04.b_47_1141

seq1  GAATTCTTTCTTGCATAAGCCTCTTACTATTTGGTTCCTATTCTTGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGCATAAGCCTCTTACTATTTGGTTCCTATTCTTGAATA  50

seq1  TGCAGCCCTAAGAAGCAAACACACCCCAGGGGGTTGGAGGTCTAGATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCTAAGAAGCAAACACACCCCAGGGGGTTGGAGGTCTAGATTAA  100

seq1  TTTCAGTAACTTAAGAATCAAGTGATTTCAGTTTTGAAGGAAGACTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTAACTTAAGAATCAAGTGATTTCAGTTTTGAAGGAAGACTATAG  150

seq1  TTAAAGAGGCTAAAACTTCTTCCCTTTGATGTGAGGGGTTCGTTAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGGCTAAAACTTCTTCCCTTTGATGTGAGGGGTTCGTTAGCCTG  200

seq1  ACTTGCAAAGTCTCGGGGAGGGGGGTCCTGGTGGCCGAATTTTAGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAAGTCTCGGGGAGGGGGGTCCTGGTGGCCGAATTTTAGGTGGG  250

seq1  GACTTTACACGGACATGGAGCAGAAGCAAGAAATTGTCACTTGCCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACACGGACATGGAGCAGAAGCAAGAAATTGTCACTTGCCTCTTG  300

seq1  TTACAAACTTATTTTGTTCTGAGCTCTGGGAGGTGCTACGAATAACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACTTATTTTGTTCTGAGCTCTGGGAGGTGCTACGAATAACTGGG  350

seq1  GGAGGGCTGGAGAGATGGCTCAGTGTTTAAGAGCACTGACTGCTCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTGGAGAGATGGCTCAGTGTTTAAGAGCACTGACTGCTCTTCCA  400

seq1  AAGGTCCTGAATTCAATTCCCAGAAACCACATGGTGGCTCACAACCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCTGAATTCAATTCCCAGAAACCACATGGTGGCTCACAACCATCT  450

seq1  GTAATGGGATTTGATGCCCTCTCCTGGTGTGTCTGAAGACAGCGACAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGATTTGATGCCCTCTCCTGGTGTGTCTGAAGACAGCGACAGTA  500

seq1  ACAGTGTACTTACATACATAAAATAGATAAATCTTAAAAAAAATTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACTTACATACATAAAATAGATAAATCTTAAAAAAAATTAAAAA  550

seq1  GAATAACTGAGAGGCACAGAAAAGAAGTTACAGCCAGGGGCACGGAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTGAGAGGCACAGAAAAGAAGTTACAGCCAGGGGCACGGAGACT  600

seq1  TTCAGTGGCTTGAAAGAGTGCAGCCACAGTCATACAGCCCAGGCATGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGCTTGAAAGAGTGCAGCCACAGTCATACAGCCCAGGCATGTGG  650

seq1  TGTTCAGGTTAAAAGAGACTGAGCTTTACCATCGTTGTTATTTTGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGTTAAAAGAGACTGAGCTTTACCATCGTTGTTATTTTGTATTT  700

seq1  CTGTTATATCCTAAGTTGTGTAAGACTCAAAGTCCAGGCTCCGTAGACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATATCCTAAGTTGTGTAAGACTCAAAGTCCAGGCTCCGTAGACGG  750

seq1  TCCGGC-TTTTGCCTCCATTACACTGGTTTGGACATGATTTTTTCATCAT  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCTTTTTGCCTCCATTACACTGGTTTGGACATGATTTTTTCATCAT  800

seq1  TTTTAACGGCCCTGATTCAGCTACAGGTTTTACTTTGAGATCCCGACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACGGCCCTGATTCAGCTACAGGTTTTACTTTGAGATCCCGACTGT  850

seq1  ACTGTATTTTCTTTGTCATCTCATCACAGCAACGTCAGAACTGAATCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTTCTTTGTCATCTCATCACAGCAACGTCAGAACTGAATCTGG  900

seq1  AGATGGACGCACGCCAGACTG-TGTATAAGGCAGGAGAAACGATCGTGGT  948
      ||||||||||||||||||||| | ||||||||||||||||||||||| ||
seq2  AGATGGACGCACGCCAGACTGTTTTATAAGGCAGGAGAAACGATCGTTGT  950

seq1  GACCTGTGCCGTCTTTAACAACGAGGTCGTTGACCTGCAGTGGACTTACC  998
      ||||||||||||||||||||||||||||||||| ||||||  ||||||| 
seq2  GACCTGTGCCGTCTTTAACAACGAGGTCGTTGA-CTGCAGGTGACTTACT  999

seq1  CTGG-AGAAGTGGTGGGTACCCCGGGATAAGGAGCTCACGGAACCCCCAC  1047
      |||| |||| |||||||||| | ||||||||||||||||||||||| |||
seq2  CTGGTAGAAATGGTGGGTACTCTGGGATAAGGAGCTCACGGAACCCTCAC  1049

seq1  AACAGGACTTGTAACTCTACACACCAGAGGTGTTTC-TCTTGGATGGG  1094
       |||||||||| |||||| |||  || | ||||||| |||||||||||
seq2  CACAGGACTTG-AACTCTCCAC-TCAAAAGTGTTTCTTCTTGGATGGG  1095

seq1: chr5_75693171_75693754
seq2: B6Ng01-058F04.g_67_650 (reverse)

seq1  CACACATCACATCACATACACACACAAATTAATTGATTATTAATTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCACATCACATACACACACAAATTAATTGATTATTAATTAAAAT  50

seq1  GTATTTACATGGAATAGTACCTATAGTGTATTGGGATTTTTAAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACATGGAATAGTACCTATAGTGTATTGGGATTTTTAAAAAGAAA  100

seq1  GGAGAAAAAAATGAGCAGATTACAAATAGTATGTATGTATCTTACAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAAATGAGCAGATTACAAATAGTATGTATGTATCTTACAATTG  150

seq1  CAATTTGTTTAAAATATGCAATTTTGGGGCCTAGGGAAATAGCTGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGTTTAAAATATGCAATTTTGGGGCCTAGGGAAATAGCTGAGAGA  200

seq1  GAGAGAGAACCCACCTAGCTTGTGTAGGGCTCTGGGCTGTATTCTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAACCCACCTAGCTTGTGTAGGGCTCTGGGCTGTATTCTCAGCA  250

seq1  TTGAAAAAAATATTTTTGTTGCTACATTTCTCTGTGTGTTTTTATCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAAATATTTTTGTTGCTACATTTCTCTGTGTGTTTTTATCTGTA  300

seq1  TGTGTAGTGGAAGAAAATTGGGGGTCATCAAATATTGAATAACCACCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTGGAAGAAAATTGGGGGTCATCAAATATTGAATAACCACCATC  350

seq1  TCTGATGATGGGATTATATGTAATTGGTCTTGTGTTTTTTCTCCTCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATGGGATTATATGTAATTGGTCTTGTGTTTTTTCTCCTCAATG  400

seq1  GACTGTAAGGATATTAAGAATATGACCTTGTTTGTATTCTGTCTCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAGGATATTAAGAATATGACCTTGTTTGTATTCTGTCTCTGGCT  450

seq1  TTGTTAATTGCCTATTAAGTGCCAGGTTTTATATCACGTGCTGAGAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATTGCCTATTAAGTGCCAGGTTTTATATCACGTGCTGAGAAGAC  500

seq1  ATTGGTGAATGTGAGACCTTACAGTTTGTTGGTTTGGATTTTTGAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGAATGTGAGACCTTACAGTTTGTTGGTTTGGATTTTTGAATAAG  550

seq1  GTCTAACTCTGTAGGCCAGTCTGGCCTGGAATTC  584
      ||||||||||||||||||||||||||||||||||
seq2  GTCTAACTCTGTAGGCCAGTCTGGCCTGGAATTC  584