BAC Information

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BAC

Clone NameB6Ng01-059G09
Chromosome5 (Build37)
Map Location 79,951,671 - 79,952,815
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059G09.bB6Ng01-059G09.g
ACCDH880693DH880694
length1,1361,031
definitionDH880693|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G09, 5' end.DH880694|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcttcattttttggttcctttagacctcctatctctttttat
ggactgcttcgtaagtgaaaaatggaaaagtttttactgtatatcgtcac
ttactaactgccagcaaatgtgtattggtcaaggctctctcttgctttct
atttcatttaggttttggtggctatgctctgtgtgaatcatttacacaca
tgcagaggttgagcatttgcatcgcttgcatttggcaaactggagagtcg
aaggaagatatgacctagtttcagtgcaagtcaaggtcaaacatggcagg
ggacaggataagcaggttttagtattcagggttctgttcaacagaagact
ataaagttctctgctgagagagagtagggaaaggaaagcgaattcttcct
cacaaagcctttcagtctattaaaatgttctgcagtgtgcacacatttca
ccttaatggaaacttatatgtctaatcacaggtctatactcactgtgttg
atttttttgaaaggaaactaaactttggctcgtattcaatttctataatc
tttactttcaaagaatatctgtgtagcatttagtatttacaatttgatct
tgcacagtcatggataaatcagaaaggcagttttgaaggattcatatgtt
attggtgacaactggaaccttgataggcatacggctaccaaaaaatgaaa
tcaggtatactgataaaaaggcaacattgcattgatttagattatttatt
tttattaattttcttgaataagaattttatacacacatatgttttgatca
cttatcttcatttacatcctgagtgtttgaaaccacaaccactccaccct
gtaaacaacatgggtatcccctgccctggtctccttttctctctctatct
acttgatgatgtaagtatatgcatgactgtaagaccatactgtggagcat
ggattcagtggtcacatccctcaacagacctgactttccctacctagtac
acatgaactgcatggcttctttgcaaaagtgagaaatctatacttttatg
aatttgacatctgtggcttactttttgttattcatatttagcaactaaat
agaatcaactaatattctatgttctcctagtaacat
gaattcacaacagaggactattgaatggctgagaagcacagaaagaaatg
atcaaagtccttagtgatgagagaaatgaaaatcaaaatgaccctgagat
tccaccttacaccaatgagaataactaagagcaaaacgtcaggtgacagc
acatgttggagaggatgtggagaaagaggaacactcctccattgcttatg
tgattgtaaacttgtacaaccactctagaaatcaatctggaggttcctca
gaaaattggaaatagatttacctgaagacccagcaataccactcttggga
atatatccaataaatgccctaccatgccacagggacacatgttccactat
gctcatagtagccttatttttgatatccagaatctggaaacaactcagat
gccctatgacagagaatggatacagaaaatctggttcatttacacaatgg
aatactactctgctattaagaacagggacaccctgagtttccaggcaaat
ggatggaactataaaatatcatcatgagtgaggtaactcagatgcaaaag
gatatgcatggcatgtacttactaataagtggatattaaacaaaaataaa
agagagagagagaagaggagagaagagaagagaagagaagagaagagaag
agaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaa
agaaaagaaaagaaaaaaccacgatacagtccacagaactcaaaagggtc
aacaagttaaagggcccaagtgaggactcctcagtaccacttggaaggga
gaagaaagcaatcacaagtggagagggaggagggacctggaaaggaaagt
ggatgagtgttgggcagggcagaggtaggctgacttggttttgggtgagg
aacaaagccctgagggcacaaagaacggaaacaggcaactcagagtagga
ggtgagggaaccctcagatgcacaaaactggagtagagactctcggatca
aatgagggactagatgaatgtgtgacttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79951671_79952815
seq2: B6Ng01-059G09.b_46_1181 (reverse)

seq1  ATGTTACTTAAGGAGAACATAG-ATATTA--TGATGTGATCTATTTTAGT  47
      ||||||||  |||||||||||| ||||||  ||||    |||| ||||||
seq2  ATGTTACT--AGGAGAACATAGAATATTAGTTGAT----TCTA-TTTAGT  43

seq1  ATGCTAAATATGAATAACAAAAAGTAAGCCACAGATGTCAAATTCATAAA  97
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGCTAAATATGAATAACAAAAAGTAAGCCACAGATGTCAAATTCATAAA  92

seq1  AGTATAGATATCTCACTTTTTGCAGAGAAGCCATTGGCAGTTCATGTGTA  147
      ||||||||| |||||| ||||||| |||||||||  ||||||||||||||
seq2  AGTATAGATTTCTCAC-TTTTGCAAAGAAGCCAT--GCAGTTCATGTGTA  139

seq1  CTAGGTTAGGGAAAGTCAGGTCTGTTGAGGGATGTGACCACTGAATCCAT  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGG-TAGGGAAAGTCAGGTCTGTTGAGGGATGTGACCACTGAATCCAT  188

seq1  GCTCCACAGTATGGTCTTACAGTCATGCATATACTTACATCATCAAGTAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACAGTATGGTCTTACAGTCATGCATATACTTACATCATCAAGTAG  238

seq1  ATAGAGAGAGAAAAGGAGACCAGGGCAGGGGATACCCATGTTGTTTACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGAGAAAAGGAGACCAGGGCAGGGGATACCCATGTTGTTTACAG  288

seq1  GGTGGAGTGGTTGTGGTTTCAAACACTCAGGATGTAAATGAAGATAAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTGGTTGTGGTTTCAAACACTCAGGATGTAAATGAAGATAAGTG  338

seq1  ATCAAAACATATGTGTGTATAAAATTCTTATTCAAGAAAATTAATAAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACATATGTGTGTATAAAATTCTTATTCAAGAAAATTAATAAAAA  388

seq1  TAAATAATCTAAATCAATGCAATGTTGCCTTTTTATCAGTATACCTGATT  447
      ||||||||||||||||||||                 |||||||||||||
seq2  TAAATAATCTAAATCAATGCNNNNNNNNNNNNNNNNNAGTATACCTGATT  438

seq1  TCATTTTTTGGTAGCCGTATGCCTATCAAGGTTCCAGTTGTCACCAATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTGGTAGCCGTATGCCTATCAAGGTTCCAGTTGTCACCAATAA  488

seq1  CATATGAATCCTTCAAAACTGCCTTTCTGATTTATCCATGACTGTGCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAATCCTTCAAAACTGCCTTTCTGATTTATCCATGACTGTGCAAG  538

seq1  ATCAAATTGTAAATACTAAATGCTACACAGATATTCTTTGAAAGTAAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTGTAAATACTAAATGCTACACAGATATTCTTTGAAAGTAAAGA  588

seq1  TTATAGAAATTGAATACGAGCCAAAGTTTAGTTTCCTTTCAAAAAAATCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAATTGAATACGAGCCAAAGTTTAGTTTCCTTTCAAAAAAATCA  638

seq1  ACACAGTGAGTATAGACCTGTGATTAGACATATAAGTTTCCATTAAGGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGAGTATAGACCTGTGATTAGACATATAAGTTTCCATTAAGGTG  688

seq1  AAATGTGTGCACACTGCAGAACATTTTAATAGACTGAAAGGCTTTGTGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGCACACTGCAGAACATTTTAATAGACTGAAAGGCTTTGTGAG  738

seq1  GAAGAATTCGCTTTCCTTTCCCTACTCTCTCTCAGCAGAGAACTTTATAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTCGCTTTCCTTTCCCTACTCTCTCTCAGCAGAGAACTTTATAG  788

seq1  TCTTCTGTTGAACAGAACCCTGAATACTAAAACCTGCTTATCCTGTCCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTGAACAGAACCCTGAATACTAAAACCTGCTTATCCTGTCCCC  838

seq1  TGCCATGTTTGACCTTGACTTGCACTGAAACTAGGTCATATCTTCCTTCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTTTGACCTTGACTTGCACTGAAACTAGGTCATATCTTCCTTCG  888

seq1  ACTCTCCAGTTTGCCAAATGCAAGCGATGCAAATGCTCAACCTCTGCATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCAGTTTGCCAAATGCAAGCGATGCAAATGCTCAACCTCTGCATG  938

seq1  TGTGTAAATGATTCACACAGAGCATAGCCACCAAAACCTAAATGAAATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAATGATTCACACAGAGCATAGCCACCAAAACCTAAATGAAATAG  988

seq1  AAAGCAAGAGAGAGCCTTGACCAATACACATTTGCTGGCAGTTAGTAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGAGAGAGCCTTGACCAATACACATTTGCTGGCAGTTAGTAAGT  1038

seq1  GACGATATACAGTAAAAACTTTTCCATTTTTCACTTACGAAGCAGTCCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATATACAGTAAAAACTTTTCCATTTTTCACTTACGAAGCAGTCCAT  1088

seq1  AAAAAGAGATAGGAGGTCTAAAGGAACCAAAAAATGAAGAAAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGATAGGAGGTCTAAAGGAACCAAAAAATGAAGAAAGAATTC  1136