BAC Information

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BAC

Clone NameB6Ng01-059G22
Chromosome5 (Build37)
Map Location 106,830,944 - 107,006,969
singlet/doubletdoublet
Overlap geneBarhl2, EG666892
Upstream geneLrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik
Downstream geneLOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059G22.bB6Ng01-059G22.g
ACCDH880717DH880718
length1,1381,117
definitionDH880717|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G22, 5' end.DH880718|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,830,944 - 106,832,098)(107,005,829 - 107,006,969)
sequence
gaattcaaattaactcctctacaatttggtgcgctgtttacatctccggg
tgtgtaactgtccattttaatctccttccagaaggaaaaccggaagcact
tgaggtctttcagcttccaggcccacaatcatgttgcaaaaagagaatca
ccaatgccctaaatgcaaggctcccctgagagcttccaactccaccgtga
attccactgtactcaaaacgcagaccttcatgttttggaatttgagggtg
ctgagacaagtctcttttggtgtttaaggaaagtatattcacttcagagg
aaaccaccacttcttgctagaaagacaaaacagtatattggcagggatgg
agatgcagaaacactctaattgatggatttctaaaggcagtggtatgctg
agtggtactacaccccatgtcataagtgtcaaattatctgttcactacat
ggactcagatttttgggtctcaatccatctttaaaagaagtatttgatta
atcaagttaatgaggacagtattcaaatgatactttttttttcaagccaa
tacaagaaaactagaagatccagctcttgtgacaagagaagacttagtat
caatttgaacgaagttaggatggaagacatagtatcagtttcaactagat
taggatgcctagtttaaatctcacactgatggagcacatgaatcagaagg
aagggttacttaacactaactgcctagtgtctgcacataagaaaagccat
cagcaaacacagggatctatttaggatcactctaaaaagctgctagtttg
agctaatttaaatttggtagattttcaagaacaatgtggccagatattca
gtttcgagttatagacccatgtgctgagaacggcagttaagacagaagga
aggtaggtcatgtaccctctcttttggaggtctaggaaactcacttgagc
agccagtgtaagcatctgatataagtgctctgagatggaacaggaactct
agcctacccacagcaatgctatagtccactgtacatagataaatggtgtg
ctgattagagactcagctgtatgtactggagaagcatggtagcaatagaa
ccatggacagaacagcatctaaagaaacttttgtgtct
gaattcaccagaaccctcatagcattaattaaaaagaatttatgtttttt
taataaaatgcttcatgttttagctcctttattcctgcaccaaatgtgat
tatgtgggggctgaagggaattcaggttaatatgttgacacacttaacaa
tgcagggtcatgctgcacagtacgcttcgccggtttggttcagtacaccc
cctgacagggcctaatcatcctgtgccctaaaggcagggggaaggagagg
attttaattactgctctgtatgcaagtttgccagcattaaattgagacat
aattaggcctctgaattttaataattgtcctagctaattgggcagacaag
tacgttatgcggcatgccgtgattagataattagtatttccaaatgacaa
aattgggctcttgattacaaattctacatgaagggggaaggtactgagca
gatctttacaagtctattaagggagagtttagcaatggtggtaatttagt
gctcatcaggaagccgagtctcattctcagagctgggtatctgggacaag
ggcctctggcccatgctgccttccactgtggctcctgcccagaatgctct
gctttgcgtcctataggctcttcctctccccagcatagtagctgttactg
accttggctaaggtgctgtgggcgtatagcaggtgataactctgaagaag
aaatcctagaactgggaaagaaaggagaggagacattcccaggaaatatc
ccagacttttccactgaagctttcttttgcaagtagctgtttagttgttt
gttcattcttggccccaccccaacacagaaaatatgtcatcccaggctgg
cctggaattcactttgtgtccagattggctactaactggtttctcctgcc
tcaacctcccactgcggggaccgggaccgagtgagctctggtgcccgctt
gctttcttattacatcttcatgcagaatcactttctcccttttacattat
ccacaaatagttgccaaataataataataaaatctcaatttaattttttg
ccatactcacccttaaagagaaaggccgagatcaatcttggagtcctatt
ctaagaaagaaaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_106830944_106832098
seq2: B6Ng01-059G22.b_43_1180

seq1  GAATTCAAATTAACTCCTCTACAATTTGGTGCGCTGTTTACATCTCCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTAACTCCTCTACAATTTGGTGCGCTGTTTACATCTCCGGG  50

seq1  TGTGTAACTGTCCATTTTAATCTCCTTCCAGAAGGAAAACCGGAAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACTGTCCATTTTAATCTCCTTCCAGAAGGAAAACCGGAAGCACT  100

seq1  TGAGGTCTTTCAGCTTCCAGGCCCACAATCATGTTGCAAAAAGAGAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTTTCAGCTTCCAGGCCCACAATCATGTTGCAAAAAGAGAATCA  150

seq1  CCAATGCCCTAAATGCAAGGCTCCCCTGAGAGCTTCCAACTCCACCGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCCTAAATGCAAGGCTCCCCTGAGAGCTTCCAACTCCACCGTGA  200

seq1  ATTCCACTGTACTCAAAACGCAGACCTTCATGTTTTGGAATTTGAGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTGTACTCAAAACGCAGACCTTCATGTTTTGGAATTTGAGGGTG  250

seq1  CTGAGACAAGTCTCTTTTGGTGTTTAAGGAAAGTATATTCACTTCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAAGTCTCTTTTGGTGTTTAAGGAAAGTATATTCACTTCAGAGG  300

seq1  AAACCACCACTTCTTGCTAGAAAGACAAAACAGTATATTGGCAGGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCACTTCTTGCTAGAAAGACAAAACAGTATATTGGCAGGGATGG  350

seq1  AGATGCAGAAACACTCTAATTGATGGATTTCTAAAGGCAGTGGTATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGAAACACTCTAATTGATGGATTTCTAAAGGCAGTGGTATGCTG  400

seq1  AGTGGTACTACACCCCATGTCATAAGTGTCAAATTATCTGTTCACTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTACTACACCCCATGTCATAAGTGTCAAATTATCTGTTCACTACAT  450

seq1  GGACTCAGATTTTTGGGTCTCAATCCATCTTTAAAAGAAGTATTTGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGATTTTTGGGTCTCAATCCATCTTTAAAAGAAGTATTTGATTA  500

seq1  ATCAAGTTAATGAGGACAGTATTCAAATGATACTTTTTTTTTCAAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTAATGAGGACAGTATTCAAATGATACTTTTTTTTTCAAGCCAA  550

seq1  TACAAGAAAACTAGAAGATCCAGCTCTTGTGACAAGAGAAGACTTAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAAACTAGAAGATCCAGCTCTTGTGACAAGAGAAGACTTAGTAT  600

seq1  CAATTTGAACGAAGTTAGGATGGAAGACATAGTATCAGTTTCAACTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGAACGAAGTTAGGATGGAAGACATAGTATCAGTTTCAACTAGAT  650

seq1  TAGGATGCCTAGTTTAAATCTCACACTGATGGAGCACATGAATCAGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGCCTAGTTTAAATCTCACACTGATGGAGCACATGAATCAGAAGG  700

seq1  AAGGGTTACTTAACACTAACTGCCTAGTGTCTGCACATAAGAAAAGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTACTTAACACTAACTGCCTAGTGTCTGCACATAAGAAAAGCCAT  750

seq1  CAGCAAACACAGGGATCTATTTAGGATCACTCTAAAAAGCTGCTAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACACAGGGATCTATTTAGGATCACTCTAAAAAGCTGCTAGTTTG  800

seq1  AGCTAATTTAAATTTGGTAGA-TTTCAAGAACAATGTGGCCAGATATTCA  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCTAATTTAAATTTGGTAGATTTTCAAGAACAATGTGGCCAGATATTCA  850

seq1  GTTTCGAGTTATAGACCCATGTGCTGAGAACGGCAGTTAAGACAGAAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGAGTTATAGACCCATGTGCTGAGAACGGCAGTTAAGACAGAAGGA  900

seq1  AGGTAGGTCATGTACCCTCTCTTTTGGAGGTCTAGGAAACTCACTTGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTCATGTACCCTCTCTTTTGGAGGTCTAGGAAACTCACTTGAGC  950

seq1  AGCCCAGTGTAAGCATCTGATATTAAGTGCTCTGAGATGGGAACAGGAAA  999
      || ||||||||||||||||||| ||||||||||||||| |||||||| ||
seq2  AG-CCAGTGTAAGCATCTGATA-TAAGTGCTCTGAGAT-GGAACAGG-AA  996

seq1  CTCTAGCCTAACCCACAGGCCAAATGCTATAGTCCACTTGTACATAGATA  1049
      ||||||||| ||||||||    ||||||||||||||| ||||||||||||
seq2  CTCTAGCCT-ACCCACAG---CAATGCTATAGTCCAC-TGTACATAGATA  1041

seq1  AATGGTGTGCTGATTATGAGACTCAGCTGTAGTCACTGAGAG-AGCATGG  1098
      |||||||||||||||| ||||||||||||||   |||| ||| |||||||
seq2  AATGGTGTGCTGATTA-GAGACTCAGCTGTATGTACTG-GAGAAGCATGG  1089

seq1  TAAGCAAATAGAGACCCATGGAACAGAACAGCATCCTAGAAAGAAATCTT  1148
      | ||||   | ||| |||||| |||||||||||||    |||||||  ||
seq2  T-AGCA---ATAGAACCATGG-ACAGAACAGCATC---TAAAGAAACTTT  1131

seq1  TGTGTCT  1155
      |||||||
seq2  TGTGTCT  1138

seq1: chr5_107005829_107006969
seq2: B6Ng01-059G22.g_68_1184 (reverse)

seq1  TTCTTTTTCT---TGAGTTAAGGACCTCCAACGTATGTGATCCTCCCGCC  47
      ||||||||||   | ||   |||| ||||||  |   |||||   | |||
seq2  TTCTTTTTCTTTCTTAGAATAGGA-CTCCAAGAT---TGATC--TCGGCC  44

seq1  TCTTCTCTTTCAGTGCTGAGATTATAGGCAAAAATTTTAAATTTAGATTT  97
      | |||||||| || | ||||  ||| ||||||||  ||||||| ||||| 
seq2  T-TTCTCTTTAAG-GGTGAG--TAT-GGCAAAAA-ATTAAATTGAGATT-  87

seq1  ATTATTATTATTATTTTGCCAAACTATTTTAGTGGGATAATGATAAAAGG  147
       ||||||||||||||| ||  ||||||||  || |||||||| |||||||
seq2  -TTATTATTATTATTTGGC--AACTATTT--GT-GGATAATG-TAAAAGG  130

seq1  GGGAAAGTGAATTCTGCATGAAG-TGTAAATAAAGAAAGCAAGCCGGGCA  196
      | ||||||| ||||||||||||| |||||   ||||||||||| ||||||
seq2  GAGAAAGTG-ATTCTGCATGAAGATGTAA--TAAGAAAGCAAG-CGGGCA  176

seq1  CCAGAGCTCACTCGGTCCCGGTCCCCGCAAGCTGGGAGGTTGAGGCAGGA  246
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  CCAGAGCTCACTCGGTCCCGGTCCCCGCA--GTGGGAGGTTGAGGCAGGA  224

seq1  GAAACCAGTTAGTAGCCAATCTGGACAACAAAGTGAATTCCAGGCCAGCC  296
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAACCAGTTAGTAGCCAATCTGGAC-ACAAAGTGAATTCCAGGCCAGCC  273

seq1  TGGGATGACATATTTTCTGTGTTGGGGTGGGGGCCAAGAATGAACAAACA  346
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGGATGACATATTTTCTGTGTTGGGGT-GGGGCCAAGAATGAACAAACA  322

seq1  ACTAAACAGCTACTTGCAAAAGAAAGCTTCAGTGGAAAAGTCTGGGATAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGCTACTTGCAAAAGAAAGCTTCAGTGGAAAAGTCTGGGATAT  372

seq1  TTCCTGGGAATGTCTCCTCTCCTTTCTTTCCCAGTTCTAGGATTTCTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGAATGTCTCCTCTCCTTTCTTTCCCAGTTCTAGGATTTCTTCT  422

seq1  TCAGAGTTATCACCTGCTATACGCCCACAGCACCTTAGCCAAGGTCAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTATCACCTGCTATACGCCCACAGCACCTTAGCCAAGGTCAGTA  472

seq1  ACAGCTACTATGCTGGGGAGAGGAAGAGCCTATAGGACGCAAAGCAGAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACTATGCTGGGGAGAGGAAGAGCCTATAGGACGCAAAGCAGAGC  522

seq1  ATTCTGGGCAGGAGCCACAGTGGAAGGCAGCATGGGCCAGAGGCCCTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGCAGGAGCCACAGTGGAAGGCAGCATGGGCCAGAGGCCCTTGT  572

seq1  CCCAGATACCCAGCTCTGAGAATGAGACTCGGCTTCCTGATGAGCACTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATACCCAGCTCTGAGAATGAGACTCGGCTTCCTGATGAGCACTAA  622

seq1  ATTACCACCATTGCTAAACTCTCCCTTAATAGACTTGTAAAGATCTGCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACCATTGCTAAACTCTCCCTTAATAGACTTGTAAAGATCTGCTC  672

seq1  AGTACCTTCCCCCTTCATGTAGAATTTGTAATCAAGAGCCCAATTTTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTTCCCCCTTCATGTAGAATTTGTAATCAAGAGCCCAATTTTGTC  722

seq1  ATTTGGAAATACTAATTATCTAATCACGGCATGCCGCATAACGTACTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAATACTAATTATCTAATCACGGCATGCCGCATAACGTACTTGT  772

seq1  CTGCCCAATTAGCTAGGACAATTATTAAAATTCAGAGGCCTAATTATGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAATTAGCTAGGACAATTATTAAAATTCAGAGGCCTAATTATGTC  822

seq1  TCAATTTAATGCTGGCAAACTTGCATACAGAGCAGTAATTAAAATCCTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTAATGCTGGCAAACTTGCATACAGAGCAGTAATTAAAATCCTCT  872

seq1  CCTTCCCCCTGCCTTTAGGGCACAGGATGATTAGGCCCTGTCAGGGGGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCTGCCTTTAGGGCACAGGATGATTAGGCCCTGTCAGGGGGTG  922

seq1  TACTGAACCAAACCGGCGAAGCGTACTGTGCAGCATGACCCTGCATTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACCAAACCGGCGAAGCGTACTGTGCAGCATGACCCTGCATTGTT  972

seq1  AAGTGTGTCAACATATTAACCTGAATTCCCTTCAGCCCCCACATAATCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTCAACATATTAACCTGAATTCCCTTCAGCCCCCACATAATCAC  1022

seq1  ATTTGGTGCAGGAATAAAGGAGCTAAAACATGAAGCATTTTATTAAAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGCAGGAATAAAGGAGCTAAAACATGAAGCATTTTATTAAAAAA  1072

seq1  ACATAAATTCTTTTTAATTAATGCTATGAGGGTTCTGGTGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTCTTTTTAATTAATGCTATGAGGGTTCTGGTGAATTC  1117