BAC Information

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BAC

Clone NameB6Ng01-062D04
Chromosome5 (Build37)
Map Location 106,695,278 - 106,827,702
singlet/doubletdoublet
Overlap geneLOC671295, 4930458A03Rik
Upstream geneMpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882
Downstream geneBarhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062D04.bB6Ng01-062D04.g
ACCDH882668DH882669
length1,1641,098
definitionDH882668|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D04, 5' end.DH882669|Mus musculus domesticus DNA, BAC clone: B6Ng01-062D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,695,278 - 106,696,472)(106,826,579 - 106,827,702)
sequence
gaattcacacccaaattttgagattaactattaaactacatggtatttaa
agtaagcttcgtctttcaatggcattgcagagactgaagcagggagccct
gttttataaactatgctataaacaaaataaaaaaccgaaggagatttcag
aagttttctagttctagtctcatttgaaagacgagggccctgaagcaggt
aaagaatggtttgctgagtatggatcaactctgacaccacactgaagggt
gacttcctgggagatactcttccctgagactcagtggctctctctgagcc
ataaggccaggcacatagtgctgctgcatgtaagttgcaaatgagtcctg
catttcacccttcctgtgttactaacactgtcatctgtctgtctgtcttt
gaggaatagaccagagcctgtctttctgcccacttggcctgaagagcaga
gctgctgtgttctccctctcaataccaacccagcccctaccctgctcctc
tctattccctatgcctgcctctctccacttctctacttagttatctcaaa
ccagtgattctcaaagggccaggacatgctacgaatccccgaggccctag
ataacccccccaggccaaaatggtctcttccctcctccgaaagatttccc
atgtcactcatttgtcatttatcgcacgcggccctgtatcatctgttcgg
tccctttttgtgtaagagcccggcttgccttgagggcagagatcatatct
tattcatcattgcatccagcacaatgcctagcctaaggcccacaacaaaa
taggtgttctataaatgttgattgatttattgtacgtggaaatgaaaatg
acttccttgcttctacaagacccaaacaaagaaagtaacttttcttagag
ccatgagatcgacttggaatacacgttttcgaggactcaaagaaagtaat
tggaagtatttgtacttatacgaacataagtgtgtctgttggtagttgaa
tgggccaacatgggttaatctgatatagcagacagacaatgaatagttct
ccaagacttgagcagttaagaactttttaaagcagttttatatgtagttt
gtttaaaatagacagattatcatctatcgaattaaagtgaaactgagtat
gctgaggcttgcta
gaattcctcacaaagtcgttgcctaatcaagacctgaacaatgacagtat
cagttggcaatacaaagcagacgtggaagtcttcaaggctccattcctac
atgagggagtgaatgcaggttacaggggaagagagtgttctccaggcaca
gggggtagatcatctgatcccaagtggccagccatataaacactaaataa
accctgcaagtagagtttatacatacatatatgtgtgtgcttatactgtg
taaactgtgttttgactgcatgcacaaccccccccacacacacatacacg
caaacacacaggaaaagaggccatgaattctgagggaatgagggacacag
aaagaattggaggaggtaaagtgggggtgcaaatgaagctaacctagtac
acatatatgaaattctaaaaaaaaaaaatgtaaaaaatatgtaggagctg
gagggtggagaggtggctcagtggttaagaacatgtactgttcttgcaga
ggacccaagttgggttcccaacactcacattaggtggctcacaatctcct
gtaactcgagctccagtggagctgatatcctatctggtctccatgggcac
actgtctcatgttcatcatacacactgcaccctctcctgcagttaaaact
aaactaagcaaactgcatgtatatacatttttcagtttacttgtaaaatg
acaattttcagtcctaacagcaacataagtgccatttttttttaaccatg
gaaaaaaaggatatcattgccactttaatttgaagtgttccctgaatgtt
ctgctggtaacttatttttatttattggcattgagtggcattgagtcatg
tgaacttttacaatattaaagacactaactgtttctgttgtatatagctt
tttagtctgtactttggtttatttttgggggtgggagtttgagacagggt
ttctctgtgtagccttgcctgtctgaaattcactctgtaaaacaagctgg
ctcgaactcaaaattccgctgccactgctcaagtgctgggataatgccgt
gcacaacactgcccgctgatttaattgattaatttctattatttcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_106695278_106696472
seq2: B6Ng01-062D04.b_48_1211

seq1  GAATTCACACCCAAATTTTGAGATTAACTATTAAACTACATGGTATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCCAAATTTTGAGATTAACTATTAAACTACATGGTATTTAA  50

seq1  AGTAAGCTTCGTCTTTCAATGGCATTGCAGAGACTGAAGCAGGGAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTTCGTCTTTCAATGGCATTGCAGAGACTGAAGCAGGGAGCCCT  100

seq1  GTTTTATAAACTATGCTATAAACAAAATAAAAAACCGAAGGAGATTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAAACTATGCTATAAACAAAATAAAAAACCGAAGGAGATTTCAG  150

seq1  AAGTTTTCTAGTTCTAGTCTCATTTGAAAGACGAGGGCCCTGAAGCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTAGTTCTAGTCTCATTTGAAAGACGAGGGCCCTGAAGCAGGT  200

seq1  AAAGAATGGTTTGCTGAGTATGGATCAACTCTGACACCACACTGAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGTTTGCTGAGTATGGATCAACTCTGACACCACACTGAAGGGT  250

seq1  GACTTCCTGGGAGATACTCTTCCCTGAGACTCAGTGGCTCTCTCTGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTGGGAGATACTCTTCCCTGAGACTCAGTGGCTCTCTCTGAGCC  300

seq1  ATAAGGCCAGGCACATAGTGCTGCTGCATGTAAGTTGCAAATGAGTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCAGGCACATAGTGCTGCTGCATGTAAGTTGCAAATGAGTCCTG  350

seq1  CATTTCACCCTTCCTGTGTTACTAACACTGTCATCTGTCTGTCTGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACCCTTCCTGTGTTACTAACACTGTCATCTGTCTGTCTGTCTTT  400

seq1  GAGGAATAGACCAGAGCCTGTCTTTCTGCCCACTTGGCCTGAAGAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAGACCAGAGCCTGTCTTTCTGCCCACTTGGCCTGAAGAGCAGA  450

seq1  GCTGCTGTGTTCTCCCTCTCAATACCAACCCAGCCCCTACCCTGCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGTTCTCCCTCTCAATACCAACCCAGCCCCTACCCTGCTCCTC  500

seq1  TCTATTCCCTATGCCTGCCTCTCTCCACTTCTCTACTTAGTTATCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCCTATGCCTGCCTCTCTCCACTTCTCTACTTAGTTATCTCAAA  550

seq1  CCAGTGATTCTCAAAGGGCCAGGACATGCTACGAATCCCCGAGGCCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTCTCAAAGGGCCAGGACATGCTACGAATCCCCGAGGCCCTAG  600

seq1  ATAACCCCCCCAGGCCAAAATGGTCTCTTCCCTCCTCCGAAAGATTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCCCCAGGCCAAAATGGTCTCTTCCCTCCTCCGAAAGATTTCCC  650

seq1  ATGTCACTCATTTGTCATTTATCGCACGCGGCCCTGTATCATCTGTTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTCATTTGTCATTTATCGCACGCGGCCCTGTATCATCTGTTCGG  700

seq1  TCCCTTTTTGTGTAAGAGCCCGGCTTGCCTTGAGGGCAGAGATCATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTTGTGTAAGAGCCCGGCTTGCCTTGAGGGCAGAGATCATATCT  750

seq1  TATTCATCATTGCATCCAGCACAATGCCTAGCCTAAGGCCCACAACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCATTGCATCCAGCACAATGCCTAGCCTAAGGCCCACAACAAAA  800

seq1  TAGGTGTTCTATAAATGTTGATTGATTTATTGTACGTGGAAATGAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTCTATAAATGTTGATTGATTTATTGTACGTGGAAATGAAAATG  850

seq1  ACTTCCTTGCTTCTACAAGACCCAAACAAAGAAAGTAACTTTTCTTAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGCTTCTACAAGACCCAAACAAAGAAAGTAACTTTTCTTAGAG  900

seq1  CCATGAGATCGACTTGGAATACACGTTTTCGAGGACTCAAAAGAAAAGTA  950
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  CCATGAGATCGACTTGGAATACACGTTTTCGAGGACTCAAA--GAAAGTA  948

seq1  ATTGGAAGTATTTGTACTTATACGAACATAAGTGTGTCTGTTGGTAGTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGTATTTGTACTTATACGAACATAAGTGTGTCTGTTGGTAGTTG  998

seq1  AAATGGGCCAACATGGGTTAATCTGATATTAAGCAGACAAGGACAAATGA  1050
       ||||||||||||||||||||||||||||  ||||||||  ||| |||||
seq2  -AATGGGCCAACATGGGTTAATCTGATAT--AGCAGACA--GAC-AATGA  1042

seq1  ATAGTTTCTCCACAGACTTGAGCAGTTAAAGATACTTTTTAAAAGCAGTT  1100
      |||| ||||||| |||||||||||||| |||| ||||||| |||||||||
seq2  ATAG-TTCTCCA-AGACTTGAGCAGTT-AAGA-ACTTTTT-AAAGCAGTT  1087

seq1  CTATATGTAGGTATGTTTTAAAAATTAGACAGATTTATCATC-ATCAGAT  1149
       |||||||| || |||||   ||| |||||||| |||||||| |||  ||
seq2  TTATATGTA-GTTTGTTT---AAAATAGACAGA-TTATCATCTATCGAAT  1132

seq1  TATAAAAAGTAGAAAAACCTGAGGGTCACTGCCCTGAGGCTTGCTA  1195
      |    ||||| ||||   |||||      |   |||||||||||||
seq2  T----AAAGT-GAAA---CTGAG------TATGCTGAGGCTTGCTA  1164

seq1: chr5_106826579_106827702
seq2: B6Ng01-062D04.g_66_1163 (reverse)

seq1  ATTGAAATTAATTAAGTAAAAATTAAAAATTAAAAAATTAAAACCAGCCG  50
      ||||||||             | || |||||||  |||| ||| ||| ||
seq2  ATTGAAAT-------------AATAGAAATTAATCAATT-AAATCAG-CG  35

seq1  GGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGTGGCAG  100
      |||||| || ||||||| | || |||||||||||||    ||||||||| 
seq2  GGCAGT-GTTGTGCACGGCATT-ATCCCAGCACTTG---AGCAGTGGCA-  79

seq1  GCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA  150
      ||||| || ||||||||| |||||| || | |||||||||| || || ||
seq2  GCGGAATTTTGAGTTCGA-GCCAGCTTGTTTTACAGAGTGAATTTCA-GA  127

seq1  CAGGCAAGGCTACACAGAGAAACCCTGTCTCAAACTCCCACCCCCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGGCTACACAGAGAAACCCTGTCTCAAACTCCCACCCCCAAAAA  177

seq1  ATTAAAACCAAAGTACAGACTAAAAAGCTATATACAACAGAAACAGTTAG  250
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ---TAAACCAAAGTACAGACTAAAAAGCTATATACAACAGAAACAGTTAG  224

seq1  TGTCTTTAATATTGTAAAAGTTCACATGACTCAATGCCACTCAATGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAATATTGTAAAAGTTCACATGACTCAATGCCACTCAATGCCAA  274

seq1  TAAATAAAAATAAGTTACCAGCAGAACATTCAGGGAACACTTCAAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAATAAGTTACCAGCAGAACATTCAGGGAACACTTCAAATTAA  324

seq1  AGTGGCAATGATATCCTTTTTTTCCATGGTTAAAAAAAAATGGCACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAATGATATCCTTTTTTTCCATGGTTAAAAAAAAATGGCACTTAT  374

seq1  GTTGCTGTTAGGACTGAAAATTGTCATTTTACAAGTAAACTGAAAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTAGGACTGAAAATTGTCATTTTACAAGTAAACTGAAAAATGT  424

seq1  ATATACATGCAGTTTGCTTAGTTTAGTTTTAACTGCAGGAGAGGGTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATGCAGTTTGCTTAGTTTAGTTTTAACTGCAGGAGAGGGTGCAG  474

seq1  TGTGTATGATGAACATGAGACAGTGTGCCCATGGAGACCAGATAGGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGATGAACATGAGACAGTGTGCCCATGGAGACCAGATAGGATAT  524

seq1  CAGCTCCACTGGAGCTCGAGTTACAGGAGATTGTGAGCCACCTAATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCACTGGAGCTCGAGTTACAGGAGATTGTGAGCCACCTAATGTGA  574

seq1  GTGTTGGGAACCCAACTTGGGTCCTCTGCAAGAACAGTACATGTTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGAACCCAACTTGGGTCCTCTGCAAGAACAGTACATGTTCTTAA  624

seq1  CCACTGAGCCACCTCTCCACCCTCCAGCTCCTACATATTTTTTACATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCACCTCTCCACCCTCCAGCTCCTACATATTTTTTACATTTT  674

seq1  TTTTTTTTAGAATTTCATATATGTGTACTAGGTTAGCTTCATTTGCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAGAATTTCATATATGTGTACTAGGTTAGCTTCATTTGCACCC  724

seq1  CCACTTTACCTCCTCCAATTCTTTCTGTGTCCCTCATTCCCTCAGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTACCTCCTCCAATTCTTTCTGTGTCCCTCATTCCCTCAGAATTC  774

seq1  ATGGCCTCTTTTCCTGTGTGTTTGCGTGTATGTGTGTGTGGGGGGGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCTTTTCCTGTGTGTTTGCGTGTATGTGTGTGTGGGGGGGGTTG  824

seq1  TGCATGCAGTCAAAACACAGTTTACACAGTATAAGCACACACATATATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAGTCAAAACACAGTTTACACAGTATAAGCACACACATATATGT  874

seq1  ATGTATAAACTCTACTTGCAGGGTTTATTTAGTGTTTATATGGCTGGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAACTCTACTTGCAGGGTTTATTTAGTGTTTATATGGCTGGCCA  924

seq1  CTTGGGATCAGATGATCTACCCCCTGTGCCTGGAGAACACTCTCTTCCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATCAGATGATCTACCCCCTGTGCCTGGAGAACACTCTCTTCCCC  974

seq1  TGTAACCTGCATTCACTCCCTCATGTAGGAATGGAGCCTTGAAGACTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTGCATTCACTCCCTCATGTAGGAATGGAGCCTTGAAGACTTCC  1024

seq1  ACGTCTGCTTTGTATTGCCAACTGATACTGTCATTGTTCAGGTCTTGATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGCTTTGTATTGCCAACTGATACTGTCATTGTTCAGGTCTTGATT  1074

seq1  AGGCAACGACTTTGTGAGGAATTC  1124
      ||||||||||||||||||||||||
seq2  AGGCAACGACTTTGTGAGGAATTC  1098