BAC Information

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BAC

Clone NameB6Ng01-063H24
Chromosome5 (Build37)
Map Location 87,195,611 - 87,196,187
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063H24.bB6Ng01-063H24.g
ACCDH883576DH883577
length8841,172
definitionDH883576|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H24, 5' end.DH883577|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataaaattcttaggcaactggatagaactagaaaatattatcct
aagtgacataacccaataacaaaagaacacacatggtatgcattcactga
taagtggatattaggttagaagctcacaatacccaagatacaattcacag
accacatgaagctcaagaagaaggaagaccaaagtgtgagtgcttcagtc
cttcttggaaggagtaacaaaatactcatgggagaaaatatggagacaaa
gtatggagcagagactgaaggaaaggccatgcagagaatgccccacctga
ggatccagcccatatacaccattactaaatgcagacactattgtagatgc
caagaagtgcaagctgtcaggagcctgatatagctgtcttatgagaggct
ctgccagagcctgacagatacagaggcagatgctcacagccaaccattga
actgattatggggtccccaatgaggagttaaagaaaggactggaggagct
gaaggggtttgcagcctgatcggaagaacaacaataccaaacaaccagag
ctcccagggactaaaccaccaaccaaggagtacacatggagggacccatg
gctccagctgaagaaaatggccttatcagacattagtggaagcagaggcc
catcatgccatgaaggcatgatgccccagagtagggagtgggggaggggg
acagaccctcctagaacaggaagaggggtttatcagatagagggtttcgg
aaagggaatcaggaaaggggataacatttgaaatggtaataaataaatat
caagggaaaagatgttctttcctcggatttaacattatatggatgataat
ttaaaaacgtctcgtgatttttatcaaaagtttt
gaattcagaggacatgttctggaatctgttctcttttcatggttttacat
atattctaaagatgggactggttgccactgttgcctaaccagtgttttaa
cttgttgggccctctggatgaccctaaaatgattcttttaaactcatcta
ccatcttatttagtgacagactgcagattgaggactaacacagattggta
cacagatatctatgtagtatggagacagtatcgctttagctggttgcttt
attcaaaatttgaagtactttctgactttacataatgaggttctttatac
ttgtgacatgcaccacctctatcccagacacagaaagattgtgaatgaag
gatgatagagagtgcatcaccagtcactgggtgtttaattctcttctgtt
ttgaacctcagagagagccaggaaatagctagccagatgaaggcacatgc
tgtcaagaacctgaagaccttaaatttattcatactacctaaggtgaaag
gacaaaatgccttctttaaaatgtcctctggcattctgtggattgtatcc
tgggaattctgcactttctttggctaatctacacttattagtgagtacat
accacacatatcttttgggggctgaattacctcactcaggatgatatttt
ctagttccacctatttgcatgcaaaactcatcatgttctcgttcttaata
gctgagcaatattccattgtgtaaatgaatcacattttctgaatccattc
ttctgtcgtgggacatctgggttgtttccaacttctggctatcacagata
aggtcactataaacatagtggaacatgtgcccctgttgcaaggtgagaca
acttttagtatattccaagagtgtgtagctgggtcttcaggtagatctag
ttcaattttctgagacctccagattgatttcagaatggttgtaccagttt
tgcatggaggactgtctatttctcacatcctcaacaatgtggctgtcacc
tagtttgattagctatctgatgtgaaggtgggttcgcaggtcaattgatt
ggcatttcctggatgactagaaattggaaattcctagtgctcttccagcc
ctcgttgtgatcctgtagtctaccaatttgaatggagttggtttcagggg
tagctctctgaggagcatctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87195611_87196187
seq2: B6Ng01-063H24.b_368_932

seq1  CATTACTAAATGCAGACACTATTGTAGATGCCAAGAAGTGCAAGCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTAAATGCAGACACTATTGTAGATGCCAAGAAGTGCAAGCTGTCA  50

seq1  GGAGCCTGATATAGCTGTCTTATGAGAGGCTCTGCCAGAGCCTGACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGATATAGCTGTCTTATGAGAGGCTCTGCCAGAGCCTGACAGAT  100

seq1  ACAGAGGCAGATGCTCACAGCCAACCATTGAACTGATTATGGGGTCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAGATGCTCACAGCCAACCATTGAACTGATTATGGGGTCCCCA  150

seq1  ATGAGGAGTTAAAGAAAGGACTGGAGGAGCTGAAGGGGTTTGCAGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGTTAAAGAAAGGACTGGAGGAGCTGAAGGGGTTTGCAGCCTGA  200

seq1  TCGGAAGAACAACAATACCAAACAACCAGAGCTCCCAGGGACTAAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGAACAACAATACCAAACAACCAGAGCTCCCAGGGACTAAACCAC  250

seq1  CAACCAAGGAGTACACATGGAGGGACCCATGGCTCCAGCTGAAGAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGGAGTACACATGGAGGGACCCATGGCTCCAGCTGAAGAAAATG  300

seq1  GCCTTATCAGACATTAGTGGAAGCAGAGGCCCATCATGCCATGAAGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCAGACATTAGTGGAAGCAGAGGCCCATCATGCCATGAAGGCAT  350

seq1  GATGCCCCAGAGTAGGGAGGTGGGGGAGGGGGACAGACCCTCCTAGAAGC  400
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  GATGCCCCAGAGTAGGGA-GTGGGGGAGGGGGACAGACCCTCCTAGAA-C  398

seq1  AGGAAGAGGGG-TTATCAGATAGAGGGTTTCGGAGAGGGAAATCAGGAAA  449
      ||||||||||| |||||||||||||||||||||| |||| ||||||||||
seq2  AGGAAGAGGGGTTTATCAGATAGAGGGTTTCGGAAAGGG-AATCAGGAAA  447

seq1  GGGGATAACATTTGAAATGTAAATAAATAAAATATTAAAGGGAAAAAAGA  499
      |||||||||||||||||||  ||||||| |||||| || ||   ||||||
seq2  GGGGATAACATTTGAAATGGTAATAAAT-AAATATCAAGGG---AAAAGA  493

seq1  TGTTCTTTCCTCGGATTTAACAATTATATTGTATGAGAATTTAAAAAACA  549
      ||||||||||||||||||||| |||||| || |||| ||||||||||   
seq2  TGTTCTTTCCTCGGATTTAAC-ATTATA-TGGATGATAATTTAAAAA--C  539

seq1  GTTTCACTGATTTTTATTCAAAAGTTTT  577
      || ||  ||||||||| |||||||||||
seq2  GTCTC-GTGATTTTTA-TCAAAAGTTTT  565