BAC Information

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BAC

Clone NameB6Ng01-064C17
Chromosome10 (Build37)5 (Build37)
Map Location 104,053,903 - 104,054,36355,510,866 - 55,511,976
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C17.bB6Ng01-064C17.g
ACCDH884039DH884040
length9991,092
definitionDH884039|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C17, 5' end.DH884040|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(55,510,866 - 55,511,976)
sequence
gaattctcacctgaggaacacagaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagagaaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtcttgcagttcctca
gaaaattggacatagtactactggaggatcccacaatacctctctggggc
atatatccagaagttattctagctggtaagaaggacacatgctccactat
gttcatagcaaacttatttataatagccaaaagctggaaagaactcagat
tcccctcaacagtgtaatggatacaaaaaatatggtacatttacacaatg
gagtactactcagctattaaaatgaatgaatttatgaaattcctaggcaa
atggatgtacctggagggcatcattctgagtgaggtaacccaatcacaaa
cgaactcatatgatatgtactcactgataagtggatattagtccagaaac
ttagaatacccaaaatataatatataatttgtaaaacacatgaatctcaa
gaaaaacgaagaccaaaatgtggacactttgtcccttcttacaattggga
gcaaaacacctatagaaggagctataaagacaaagtttggagttgagatg
aggatggaccatctagagactgccatatttgggtatccatcccataatca
gcctccaaatgctgacactattgcatacactagcaagattttgctgaaag
gaccctgatatagctgtctcttttgaggctattcttgggcctagcaaaca
cagaagtggatactcacttgtcagcttattggatggatcacaggtcccaa
tgaggagctagagaagtacccatgagctaaagcaatctgcaccctataa
gaattcctgtgatttgtcatggttatcctgtacactggcaaatatattta
tccattgagccatctgagtggcccatacttaacttttaataaacaagatt
cttcatttttgtaactttttttttttttacagatttttgataatgagttc
tgtcaggttttatttaattgctaaatgaatttctcacttttacctatccc
taaccttttaatttttttctttctctcaaatatatcattgttttaagaac
tggctttttttcatgacataaataatgagtagactttaataacttgccaa
gttcggtcttccttatgggaactgtctttaaaaagtaatccaaaatcttg
aaaaaaatcaaacacacaccaacatgaacccatgtccacacactaaatga
aattgattttaagaattatgttcaaaacaagaaattattctaagaaaaga
gggagaatgtgagaagtataatggttagttatttgtaggatgataagaac
caacgctttagcctgaactgctaaacaagataatatgttaacagaagccg
tgtattaaatttccaatgagataccccttcaatgtgtccctgtagttgta
acatccacacatattcattttttgcacaatttggtattcaggctctatat
cctaccctttggaggtgaataataaacaacttgtatcattttgaaaattt
atcctgagtgaattttttcatctcactgtttcatggctgttcttgtcatt
acctttctacttttgttttattgcccagaatgtgctctttatctccttat
atattctacattcaaataaatcgaagtgatttcagtttatttcttgcatt
tattttaaacataggggatttttactttctcttatttcagtactactcca
aaaatatagctactcatatcaaatctatttcttagcccctcatcaaggaa
gcttgccttttgaccaacagataattacaggaaaaaaaaaaatgcaggct
gccagcacagtcctggggaacctactcctaccctaagctggaagatcccg
gcgaaaagctaggaggtaaagagtgctagaggaatctggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-064C17.b_45_515 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||| ||||| ||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCATATTTTTTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||| | ||||||||||| ||||| |||||||||||||  ||||||||
seq2  TCCATTACACTGTTGAGGGGAATCTGAGTTCTTTCCAGCTTTTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||  ||||||||| |||||||||||||||||||||||||| | 
seq2  ATAAATAAGTTTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGC  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      | |   | |||||||||||||||||   ||||||||||  ||||||||| 
seq2  TAGAATAACTTCTGGATATATGCCCCAGAGAGGTATTGTGGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||| || |||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACTGCAAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTTCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||| |||||||||||||||||||||||| ||||||| 
seq2  CTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCT  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      || ||||||||||||||||||
seq2  GTGTTCCTCAGGTGAGAATTC  471

seq1: chr5_55510866_55511976
seq2: B6Ng01-064C17.g_68_1159 (reverse)

seq1  ACTCCAGATTCCTCTAGCATTTCTTACCATCCTTAGCTCTCTTCTGCAGT  50
      ||||||||||||||||||| |  ||||| ||| |||||   ||  || | 
seq2  ACTCCAGATTCCTCTAGCACTCTTTACC-TCC-TAGCT---TTTCGCCGG  45

seq1  GATCTTTCAGGCTTATGTGTAGGAGTAGTGTCCACCAGGACTGTGCTGGG  100
      |||||| || ||||| | |||||||||| || | ||||||||||||| ||
seq2  GATCTTCCA-GCTTA-GGGTAGGAGTAG-GTTCCCCAGGACTGTGCT-GG  91

seq1  CAGCCCTGCATTTTTTTTTTT-CTGTAATTATCTGTTTGGTCAAAAGGCA  149
      ||| ||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  CAG-CCTGCATTTTTTTTTTTCCTGTAATTATCTG-TTGGTCAAAAGGCA  139

seq1  AGCTTCCTTGATGAGGGGGCTAAGGAAATAAGATTTGATATGAGTAGCTA  199
      |||||||||||||| |||||||| ||||| ||||||||||||||||||||
seq2  AGCTTCCTTGATGA-GGGGCTAA-GAAAT-AGATTTGATATGAGTAGCTA  186

seq1  TATTTTTGGAGTAGTACTTGAAATAAAGAGAAAGTAAAAAATCACTTATG  249
      ||||||||||||||||| |||||| |||||||||| ||||||| | ||||
seq2  TATTTTTGGAGTAGTAC-TGAAAT-AAGAGAAAGT-AAAAATCCCCTATG  233

seq1  TTTAAAATAAATGCAAGAAATAAACTGAAATCAACTTTCGATTTATTTGA  299
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TTTAAAATAAATGCAAGAAATAAACTGAAATCA--CTTCGATTTATTTGA  281

seq1  ATGTAG-ATATATAAGGAGATAAAGAGCCACATTCTGGGGCAATAAAACA  348
      |||||| |||||||||||||||||||| |||||||| |||||||||||||
seq2  ATGTAGAATATATAAGGAGATAAAGAG-CACATTCT-GGGCAATAAAACA  329

seq1  AAAGTAGGAAAGGTAATGACAAGAACAGCCATGAAACAGTGAGATGAAAA  398
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTA-GAAAGGTAATGACAAGAACAGCCATGAAACAGTGAGATGAAAA  378

seq1  AATTCACTCAGGATAAATTTTC-AAATGATACAAGTTGTTTATTATTCAC  447
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATTCACTCAGGATAAATTTTCAAAATGATACAAGTTGTTTATTATTCAC  428

seq1  CTCCAAAGGGTAGGATATAGAGCCTGAATACCAAATTGTGCAAAAAATGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGGGTAGGATATAGAGCCTGAATACCAAATTGTGCAAAAAATGA  478

seq1  ATATGTGTGGATGTTACAACTACAGGGACACATTGAAGGGGTATCTCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGGATGTTACAACTACAGGGACACATTGAAGGGGTATCTCATT  528

seq1  GGAAATTTAATACACGGCTTCTGTTAACATATTATCTTGTTTAGCAGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTAATACACGGCTTCTGTTAACATATTATCTTGTTTAGCAGTTC  578

seq1  AGGCTAAAGCGTTGGTTCTTATCATCCTACAAATAACTAACCATTATACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAGCGTTGGTTCTTATCATCCTACAAATAACTAACCATTATACT  628

seq1  TCTCACATTCTCCCTCTTTTCTTAGAATAATTTCTTGTTTTGAACATAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATTCTCCCTCTTTTCTTAGAATAATTTCTTGTTTTGAACATAAT  678

seq1  TCTTAAAATCAATTTCATTTAGTGTGTGGACATGGGTTCATGTTGGTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATCAATTTCATTTAGTGTGTGGACATGGGTTCATGTTGGTGTG  728

seq1  TGTTTGATTTTTTTCAAGATTTTGGATTACTTTTTAAAGACAGTTCCCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATTTTTTTCAAGATTTTGGATTACTTTTTAAAGACAGTTCCCAT  778

seq1  AAGGAAGACCGAACTTGGCAAGTTATTAAAGTCTACTCATTATTTATGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGACCGAACTTGGCAAGTTATTAAAGTCTACTCATTATTTATGTC  828

seq1  ATGAAAAAAAGCCAGTTCTTAAAACAATGATATATTTGAGAGAAAGAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAGCCAGTTCTTAAAACAATGATATATTTGAGAGAAAGAAAA  878

seq1  AAATTAAAAGGTTAGGGATAGGTAAAAGTGAGAAATTCATTTAGCAATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAGGTTAGGGATAGGTAAAAGTGAGAAATTCATTTAGCAATTA  928

seq1  AATAAAACCTGACAGAACTCATTATCAAAAATCTGTAAAAAAAAAAAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCTGACAGAACTCATTATCAAAAATCTGTAAAAAAAAAAAAAG  978

seq1  TTACAAAAATGAAGAATCTTGTTTATTAAAAGTTAAGTATGGGCCACTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAATGAAGAATCTTGTTTATTAAAAGTTAAGTATGGGCCACTCA  1028

seq1  GATGGCTCAATGGATAAATATATTTGCCAGTGTACAGGATAACCATGACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAATGGATAAATATATTTGCCAGTGTACAGGATAACCATGACA  1078

seq1  AATCACAGGAATTC  1111
      ||||||||||||||
seq2  AATCACAGGAATTC  1092