BAC Information

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BAC

Clone NameB6Ng01-064K11
Chromosome5 (Build37)
Map Location 122,526,657 - 122,712,626
singlet/doubletdoublet
Overlap geneMyl2, Ccdc63, Ppp1cc, Hvcn1, Tect1
Upstream geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693
Downstream genePptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064K11.bB6Ng01-064K11.g
ACCDH884373DH884374
length686691
definitionDH884373|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K11, 5' end.DH884374|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,711,941 - 122,712,626)(122,526,657 - 122,527,345)
sequence
gaattcctgtctcaaagaaaaacaacaagaaacaaacaaacaaacagatt
cagtgacaccttagctggggaaaggcaggaaccatggtggaaggcacctg
tgacccaaagtagcctctgcttcaggaagcaaagagcaaacaaccaaaat
tgccaaagccctggatgcattatttcctctctcctcacagtagtctgtgc
catgaattcagtttgttatctttgtgctatatattgtttcttgttgttgt
atgttgtggttttttttgagattatcttatctatctgtatgccatatacg
tgccccgtaccttcagaggccagaagagggcatgagatcccctggagcca
gagttagagatggttgtgagcggtcctgtgggttgtggacaccgaagtta
gatcctctgcaggagcagccagtgctctatcgcgatcaccccgcctcttt
agccctctgttgtttctttgagagggttttctccattgacagagatagaa
tgagcagggtagtaaagacagtagtaaactgagccagtctatcgcgtgct
cagtactctgcgaggaagctctcccttctgctctcgtggaggttctctgc
ctgatcgatgcgagtcctgaagactcagtcacagtggctgtcagggtggc
tgaggtctgagttgctgtctgggtgggggtgggggg
gaattcctatccggaaccagcagggaggttcagtccagggataatgaggt
cgtgactctgcataatctttccagtaatggtgtgcgggagacagagcttg
tatgacagaacagtcaagactcgagactgccagcatgcacagggctctag
gagttccagggctggggataaggtcctggtgttgctatgttccatataat
caaagcatggagtgtgggggtggatctgggaaactgagcatccaactttg
gtagagactggtttgtttgtttgtttgtttgtttgttttcccttcagtag
agagttatgagtcacacgagcctttccaatctgttcttagacctgtgaca
cttgtgtgtgttttctgcagggcacgtggactgtgccaggagaggaatga
atgagcatgggactggtgaggtggagtgtgcccaaaccccacagatctca
ggtttgagagggcacaagtagacctaatttcctccctgtctccatgcctg
tttgggggtcatgtaaccacaaccccaaccagatggtcacaggtagtcag
tcatgaagtggtgcacctgggaagccttctccatgcaaaatagagcatca
ccaacctcttagcttagccaatagaattgcattgtcctcccaagtccatc
ccactccccgggggttcttagggcccctgtccacatggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122711941_122712626
seq2: B6Ng01-064K11.b_48_733 (reverse)

seq1  CCCCCCACCCCCACCCAGACAGCAACTCAGACCTCAGCCACCCTGACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCCACCCAGACAGCAACTCAGACCTCAGCCACCCTGACAGC  50

seq1  CACTGTGACTGAGTCTTCAGGACTCGCATCGATCAGGCAGAGAACCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGACTGAGTCTTCAGGACTCGCATCGATCAGGCAGAGAACCTCCA  100

seq1  CGAGAGCAGAAGGGAGAGCTTCCTCGCAGAGTACTGAGCACGCGATAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCAGAAGGGAGAGCTTCCTCGCAGAGTACTGAGCACGCGATAGAC  150

seq1  TGGCTCAGTTTACTACTGTCTTTACTACCCTGCTCATTCTATCTCTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTTTACTACTGTCTTTACTACCCTGCTCATTCTATCTCTGTCA  200

seq1  ATGGAGAAAACCCTCTCAAAGAAACAACAGAGGGCTAAAGAGGCGGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAACCCTCTCAAAGAAACAACAGAGGGCTAAAGAGGCGGGGTG  250

seq1  ATCGCGATAGAGCACTGGCTGCTCCTGCAGAGGATCTAACTTCGGTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCGATAGAGCACTGGCTGCTCCTGCAGAGGATCTAACTTCGGTGTCC  300

seq1  ACAACCCACAGGACCGCTCACAACCATCTCTAACTCTGGCTCCAGGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCACAGGACCGCTCACAACCATCTCTAACTCTGGCTCCAGGGGAT  350

seq1  CTCATGCCCTCTTCTGGCCTCTGAAGGTACGGGGCACGTATATGGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCCTCTTCTGGCCTCTGAAGGTACGGGGCACGTATATGGCATAC  400

seq1  AGATAGATAAGATAATCTCAAAAAAAACCACAACATACAACAACAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAAGATAATCTCAAAAAAAACCACAACATACAACAACAAGAAA  450

seq1  CAATATATAGCACAAAGATAACAAACTGAATTCATGGCACAGACTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATAGCACAAAGATAACAAACTGAATTCATGGCACAGACTACTGT  500

seq1  GAGGAGAGAGGAAATAATGCATCCAGGGCTTTGGCAATTTTGGTTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAGGAAATAATGCATCCAGGGCTTTGGCAATTTTGGTTGTTTG  550

seq1  CTCTTTGCTTCCTGAAGCAGAGGCTACTTTGGGTCACAGGTGCCTTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTTCCTGAAGCAGAGGCTACTTTGGGTCACAGGTGCCTTCCAC  600

seq1  CATGGTTCCTGCCTTTCCCCAGCTAAGGTGTCACTGAATCTGTTTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTCCTGCCTTTCCCCAGCTAAGGTGTCACTGAATCTGTTTGTTTG  650

seq1  TTTGTTTCTTGTTGTTTTTCTTTGAGACAGGAATTC  686
      ||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTGTTGTTTTTCTTTGAGACAGGAATTC  686

seq1: chr5_122526657_122527345
seq2: B6Ng01-064K11.g_71_761

seq1  GAATTCCTATCCGGAACCAGCAGGGAGGTTCAGTCCAGGGATAATGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCCGGAACCAGCAGGGAGGTTCAGTCCAGGGATAATGAGGT  50

seq1  CGTGACTCTGCATAATCTTTCCAGTAATGGTGTGCGGGAGACAGAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTCTGCATAATCTTTCCAGTAATGGTGTGCGGGAGACAGAGCTTG  100

seq1  TATGACAGAACAGTCAAGACTCGAGACTGCCAGCATGCACAGGGCTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGAACAGTCAAGACTCGAGACTGCCAGCATGCACAGGGCTCTAG  150

seq1  GAGTTCCAGGGCTGGGGATAAGGTCCTGGTGTTGCTATGTTCCATATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGGCTGGGGATAAGGTCCTGGTGTTGCTATGTTCCATATAAT  200

seq1  CAAAGCATGGAGTGTGGGGGTGGATCTGGGAAACTGAGCATCCAACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATGGAGTGTGGGGGTGGATCTGGGAAACTGAGCATCCAACTTTG  250

seq1  GTAGAGACTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTTCCCTTCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGACTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTTCCCTTCAGTAG  300

seq1  AGAGTTATGAGTCACACGAGCCTTTCCAATCTGTTCTTAGACCTGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATGAGTCACACGAGCCTTTCCAATCTGTTCTTAGACCTGTGACA  350

seq1  CTTGTGTGTGTTTTCTGCAGGGCACGTGGACTGTGCCAGGAGAGGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTGTTTTCTGCAGGGCACGTGGACTGTGCCAGGAGAGGAATGA  400

seq1  ATGAGCATGGGACTGGTGAGGTGGAGTGTGCCCAAACCCCACAGATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATGGGACTGGTGAGGTGGAGTGTGCCCAAACCCCACAGATCTCA  450

seq1  GGTTTGAGAGGGCACAAGTAGACCTAATTTCCTCCCTGTCTCCATGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGAGGGCACAAGTAGACCTAATTTCCTCCCTGTCTCCATGCCTG  500

seq1  TTTGGGGGTCATGTAACCACAACCCCAACCAGATGGTCACAGGTAGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTCATGTAACCACAACCCCAACCAGATGGTCACAGGTAGTCAG  550

seq1  TCATGAAGTGGTGCACCT-GGAAGCCTTCTCCATGC-AAATAGAGCATCA  598
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TCATGAAGTGGTGCACCTGGGAAGCCTTCTCCATGCAAAATAGAGCATCA  600

seq1  CCAACCTCTTAGCCTTAGCCAATAGAA-TGCATTGTCCTCCCAAGTCCCA  647
      |||||||||||| |||||||||||||| |||||||||||||||||| |||
seq2  CCAACCTCTTAG-CTTAGCCAATAGAATTGCATTGTCCTCCCAAGT-CCA  648

seq1  TCCCACTCCCC-GGGGTTCATAGGGCCCCTGTCCACATGGAAT  689
      ||||||||||| ||||||| |||||||||||||||||||||||
seq2  TCCCACTCCCCGGGGGTTCTTAGGGCCCCTGTCCACATGGAAT  691