BAC Information

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BAC

Clone NameB6Ng01-065A04
Chromosome5 (Build37)
Map Location 83,511,825 - 83,559,021
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065A04.bB6Ng01-065A04.g
ACCDH884620DH884621
length1,242930
definitionDH884620|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A04, 5' end.DH884621|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,511,825 - 83,513,122)(83,558,100 - 83,559,021)
sequence
gaattcaatccaaaggtataaaaactctgctcagtgacattatagtcaga
aatgtgtcaaagctataggaagagatgactacaaaacaggcattttgaaa
tccaaatagatattaactggagaatcttagcaagacagaacaatattcaa
aatgccccaaccataaagaaaacaaaacaacattaaaagataaaagataa
aaatgccaactcacaaggggcaggttcatcagaacagtatcagatcactc
aaggaacacttggcagccagaaaggcacaaaatgaatatattataagccc
tgaacacaaacagctgccaatgtagattattgtatctagcaaagttatgt
tccacttgatgaagaaacaatgacatttcaaggaagcataatttaaaaca
atttataactaccaaaccgttattgctgaagatactcaacactatataca
gaaagataaagaagataagagtggatgactgcagaattccattcttatta
gtaactctatcactcagaaaaatgtattaacatgaaatgtcataatgacc
tggagataaactgtcttggtatacatttgataatactttagaaaatatct
tcagaagatatgttaatgattttaaagagcttctaacaaacttaaagaaa
atcatggatattttactataatatacacttactaaaataaccaggtgatt
tgatttccaatatgattgccatcaacaaaggagaatttacaaataaatgt
actattcatcatggcttaatatatctgctttttgaatgaatattaattag
tattttatagttaaatgaagcaaattcaattttattagaataatagaaaa
tctactaacaaaattgtgataatcattcttaactgtcaatttgatacttt
tgaagatgaatagaagttaataacgctactgttagctatgcctgctagag
agtttctggagatatttacaggaaagaactaaggtgataacattccctga
aggaggcatcatggatgaaagtagagaaagagagcttgtagtcatggcta
actcatgtcctgcattattggcctgttgtttctgccctacaggaatctgt
gtcatctgcttcattcttctctgattcttggcctacctaacaggcagatc
atgcatcgacctatttagctctctcattgtttgaaccagaatatatatta
gcctttctcctcattacttacaaattctgcctatttcctaga
gaattctttccttctccgacactccatagatggactcttacattatttca
cctgaaggaatactgcctatactaattaaatgagataatctcttttgctt
aacttcaactaattacaagtttgaatcacatcttccaaataaccagacag
taaaaccccaattaatgctcaattgaatagatgagggctgccatctggcc
tgcttgacacatgaaactagctgtcgtaaccctaaaagaacattttaaat
tacagaccataaaatatggaatggtttaattatacttatccttatttttg
ttcttgccagattaattaactataattattctcacttaaatataaggcag
tggagaggagacatttagagttgttaatgagtagacagaattaaaatcaa
tgtgtgatatgagtgtgatatgaatgccttttccgtactcttctgcctca
ggatataagtgacagaagtaatatagagtaatatagataattaatcatat
tcctaaaaactcatttgacaactatatttgcttggaatagatttttttcc
ttcaatacttacttgcataatttgaaagtctttctgatatggattttcat
gttcttatttacttttatttttagagtatatagttttatttcatctcttt
acaattttcttgtttttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
cacttgcgttcatattcaacagcacatgcatagcagttttaagacagctt
tccctgagtagattctcacctttctcctggttgaatcagagtccgacttg
ttctttggtgctgtgcttccatacggaaaggtgtactgactggttttgtg
tgtcaacttgacataggctggagtatcacaaagaaaggagcttcagttgg
gtaagtgccccatgagatacagcttgtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83511825_83513122
seq2: B6Ng01-065A04.b_47_1288

seq1  GAATTCAATCCAAAGGTATAAAAACTCTGCTCAGTGACATTATAGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCAAAGGTATAAAAACTCTGCTCAGTGACATTATAGTCAGA  50

seq1  AATGTGTCAAAGCTATAGGAAGAGATGACTACAAAACAGGCATTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCAAAGCTATAGGAAGAGATGACTACAAAACAGGCATTTTGAAA  100

seq1  TCCAAATAGATATTAACTGGAGAATCTTAGCAAGACAGAACAATATTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAGATATTAACTGGAGAATCTTAGCAAGACAGAACAATATTCAA  150

seq1  AATGCCCCAACCATAAAGAAAACAAAACAACATTAAAAGATAAAAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCAACCATAAAGAAAACAAAACAACATTAAAAGATAAAAGATAA  200

seq1  AAATGCCAACTCACAAGGGGCAGGTTCATCAGAACAGTATCAGATCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAACTCACAAGGGGCAGGTTCATCAGAACAGTATCAGATCACTC  250

seq1  AAGGAACACTTGGCAGCCAGAAAGGCACAAAATGAATATATTATAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACACTTGGCAGCCAGAAAGGCACAAAATGAATATATTATAAGCCC  300

seq1  TGAACACAAACAGCTGCCAATGTAGATTATTGTATCTAGCAAAGTTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAAACAGCTGCCAATGTAGATTATTGTATCTAGCAAAGTTATGT  350

seq1  TCCACTTGATGAAGAAACAATGACATTTCAAGGAAGCATAATTTAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGATGAAGAAACAATGACATTTCAAGGAAGCATAATTTAAAACA  400

seq1  ATTTATAACTACCAAACCGTTATTGCTGAAGATACTCAACACTATATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACTACCAAACCGTTATTGCTGAAGATACTCAACACTATATACA  450

seq1  GAAAGATAAAGAAGATAAGAGTGGATGACTGCAGAATTCCATTCTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAAAGAAGATAAGAGTGGATGACTGCAGAATTCCATTCTTATTA  500

seq1  GTAACTCTATCACTCAGAAAAATGTATTAACATGAAATGTCATAATGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTATCACTCAGAAAAATGTATTAACATGAAATGTCATAATGACC  550

seq1  TGGAGATAAACTGTCTTGGTATACATTTGATAATACTTTAGAAAATATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAAACTGTCTTGGTATACATTTGATAATACTTTAGAAAATATCT  600

seq1  TCAGAAGATATGTTAATGATTTTAAAGAGCTTCTAACAAACTTAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGATATGTTAATGATTTTAAAGAGCTTCTAACAAACTTAAAGAAA  650

seq1  ATCATGGATATTTTACTATAATATACACTTACTAAAATAACCAGGTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGATATTTTACTATAATATACACTTACTAAAATAACCAGGTGATT  700

seq1  TGATTTCCAATATGATTGCCATCAACAAAGGAGAATTTACAAATAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCAATATGATTGCCATCAACAAAGGAGAATTTACAAATAAATGT  750

seq1  ACTATTCATCATGGCTTAATATATCTGCTTTTTGAATGAATATTAATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCATCATGGCTTAATATATCTGCTTTTTGAATGAATATTAATTAG  800

seq1  TATTTTATAGTTAAATGAAGCAAAATTCAATTTTATTAGAATAATAGAAA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATTTTATAGTTAAATGAAGC-AAATTCAATTTTATTAGAATAATAGAAA  849

seq1  ATCTACTAACAAAAATTGTGATAATCATTCTTAACTGTCAATTTGATACT  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTAAC-AAAATTGTGATAATCATTCTTAACTGTCAATTTGATACT  898

seq1  TTTGAAAGATGAATAGAAGGTTAATAACGCTAACTGTTAGCTATGCCTGC  950
      |||| ||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTTG-AAGATGAATAGAA-GTTAATAACGCT-ACTGTTAGCTATGCCTGC  945

seq1  TAGAGAGTTTCTGGAGATAATTTACAGGAAAGAAACTAAGGGTGATAAAC  1000
      |||||||||||||||||| ||||||||||||| |||||| |||||| |||
seq2  TAGAGAGTTTCTGGAGAT-ATTTACAGGAAAG-AACTAA-GGTGAT-AAC  991

seq1  ATTCCCTGAAGGGAGGCATCCAATGGAATGAAAGTAGAGAAAGAAGAAGC  1050
      |||||||||| |||||||||  |||| |||||||||||||||||   |||
seq2  ATTCCCTGAA-GGAGGCATC--ATGG-ATGAAAGTAGAGAAAGA--GAGC  1035

seq1  TTGTAGTCATGGCTAAACTTCATTGTCCTTGCATTAGTGGGCCTGTTGTT  1100
      ||||||||||||||||   ||| ||||| ||||||| | |||||||||||
seq2  TTGTAGTCATGGCTAA--CTCA-TGTCC-TGCATTA-TTGGCCTGTTGTT  1080

seq1  TCTGCCCTTACCAGTGGATATCTGTGTCATTCTGCTTCATTCTTCCCTTC  1150
      ||||||||    |  ||| |||||||||| |||||||||||||||   ||
seq2  TCTGCCCT----ACAGGA-ATCTGTGTCA-TCTGCTTCATTCTTC---TC  1121

seq1  TGAATTCATAGCCATAACTAACCAGCAGAATCCATGCATTCAGACTCATA  1200
      || |||| | ||| || |||||  |||||   |||||||   |||  || 
seq2  TG-ATTCTTGGCC-TACCTAACAGGCAGA--TCATGCAT--CGACCTAT-  1164

seq1  TTAGGGCTGCATCATTGTTAGAACACCAAGAATAAATAATATAATCCACT  1250
      |||  |||   |||||||| |||   | |||||| |||           |
seq2  TTA--GCTCTCTCATTGTTTGAA---CCAGAATATATA-----------T  1198

seq1  TATTCAATCACTTCATATAACTCTATACAATATCTG-CTATTTCCTAGA  1298
      ||  |  || | ||  || |||   |||||  |||| ||||||||||||
seq2  TAGCCTTTCTCCTC--ATTACT---TACAAATTCTGCCTATTTCCTAGA  1242

seq1: chr5_83558100_83559021
seq2: B6Ng01-065A04.g_68_991 (reverse)

seq1  AGCTGTATCTCATGGGGGCACTTACCCAACTGAAGCTCCTTTCTTTGTGA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATCTCAT-GGGGCACTTACCCAACTGAAGCTCCTTTCTTTGTGA  49

seq1  TAACTCCAGCCTATGTCAAGTTGACACACAAAACCAGTCAGTACACC-TT  99
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  T-ACTCCAGCCTATGTCAAGTTGACACACAAAACCAGTCAGTACACCTTT  98

seq1  CCGTATGG-AGCACAGCACC-AAGAACAAGTCGGACTCTGATTCAACCAG  147
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  CCGTATGGAAGCACAGCACCAAAGAACAAGTCGGACTCTGATTCAACCAG  148

seq1  GAGAAAGGTGAGAATCTACTCAGGG-AAGCTGTCTTAAGACTGCTATGCA  196
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GAGAAAGGTGAGAATCTACTCAGGGAAAGCTGTCTTAAAACTGCTATGCA  198

seq1  TGTGCTGTTGAATATGAACGCAAGTGTACACACACACACACACACACACA  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTGCTGTTGAATATGAACGCAAGTGCACACACACACACACACACACACA  248

seq1  CACACACTTAAAAACAAGAAAATTGTAAAGAGATGAAATAAAACTATATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTTAAAAACAAGAAAATTGTAAAGAGATGAAATAAAACTATATA  298

seq1  CTCTAAAAATAAAAGTAAATAAGAACATGAAAATCCATATCAGAAAGACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAAATAAAAGTAAATAAGAACATGAAAATCCATATCAGAAAGACT  348

seq1  TTCAAATTATGCAAGTAAGTATTGAAGGAAAAAAATCTATTCCAAGCAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTATGCAAGTAAGTATTGAAGGAAAAAAATCTATTCCAAGCAAA  398

seq1  TATAGTTGTCAAATGAGTTTTTAGGAATATGATTAATTATCTATATTACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGTCAAATGAGTTTTTAGGAATATGATTAATTATCTATATTACT  448

seq1  CTATATTACTTCTGTCACTTATATCCTGAGGCAGAAGAGTACGGAAAAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTACTTCTGTCACTTATATCCTGAGGCAGAAGAGTACGGAAAAGG  498

seq1  CATTCATATCACACTCATATCACACATTGATTTTAATTCTGTCTACTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATATCACACTCATATCACACATTGATTTTAATTCTGTCTACTCAT  548

seq1  TAACAACTCTAAATGTCTCCTCTCCACTGCCTTATATTTAAGTGAGAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTCTAAATGTCTCCTCTCCACTGCCTTATATTTAAGTGAGAATA  598

seq1  ATTATAGTTAATTAATCTGGCAAGAACAAAAATAAGGATAAGTATAATTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTTAATTAATCTGGCAAGAACAAAAATAAGGATAAGTATAATTA  648

seq1  AACCATTCCATATTTTATGGTCTGTAATTTAAAATGTTCTTTTAGGGTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCCATATTTTATGGTCTGTAATTTAAAATGTTCTTTTAGGGTTA  698

seq1  CGACAGCTAGTTTCATGTGTCAAGCAGGCCAGATGGCAGCCCTCATCTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGCTAGTTTCATGTGTCAAGCAGGCCAGATGGCAGCCCTCATCTAT  748

seq1  TCAATTGAGCATTAATTGGGGTTTTACTGTCTGGTTATTTGGAAGATGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGAGCATTAATTGGGGTTTTACTGTCTGGTTATTTGGAAGATGTG  798

seq1  ATTCAAACTTGTAATTAGTTGAAGTTAAGCAAAAGAGATTATCTCATTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACTTGTAATTAGTTGAAGTTAAGCAAAAGAGATTATCTCATTTA  848

seq1  ATTAGTATAGGCAGTATTCCTTCAGGTGAAATAATGTAAGAGTCCATCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATAGGCAGTATTCCTTCAGGTGAAATAATGTAAGAGTCCATCTA  898

seq1  TGGAGTGTCGGAGAAGGAAAGAATTC  922
      ||||||||||||||||||||||||||
seq2  TGGAGTGTCGGAGAAGGAAAGAATTC  924