BAC Information

Click to search

BAC

Clone NameB6Ng01-065D01
Chromosome5 (Build37)
Map Location 108,119,476 - 108,268,701
singlet/doubletdoublet
Overlap geneGfi1, LOC100042473, Evi5, 1700013N18Rik
Upstream geneZfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207
Downstream geneRpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065D01.bB6Ng01-065D01.g
ACCDH884740DH884741
length799967
definitionDH884740|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D01, 5' end.DH884741|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,119,476 - 108,120,271)(108,267,728 - 108,268,701)
sequence
gaattctctttttttaaaaaaaaaagtgataaaacctaaaatatcttaaa
agttggattcatttatcaatttaaagtgatgtgttaataaattcaatgtc
agtgatcaagtattaaattgatacagaataactacttatcgatttattaa
ttctaggtgcgtatgtgtgtgcctgagtgtatgtctgtgcaccacttctg
tgtaggtgccctcaggggccaaaaagggcaccagatctcctgtaactaaa
gtcataggtggttgtgagccggggactgaacccaggtcctctgcaggagc
aacagtgcttttaaccactaagcaatttccagcccaagaaggaatgttct
gcagctgcccttcattctcccttcctgtctgatccagaagtaatacagaa
tcatacggaatccaaaggctgtaaaaattcacaatacgtacagcaaaact
cccccagttctgttgtgctttaccctatcctcggtcataaacacttactc
tccttcacacgtgttcctaacttttccttgtgtacactagcattgatttt
tatcagaacagatagaggggcccagtgacctcgaggttgtctttagggta
ctgagatgacccttaggtttaaacagaagaactgggacaggagacaaaca
gccttggtcaagtcatgatcctgcttatcactgtacaacctctaattctg
aaaggttgtcaagaataaattgctctttcagccagtttgatgtatatctc
tcccataaatgactgctctcttcttgggcaggggggtggtggggggggg
gaattctttttttttttaattatttttatttgatcttgtgggtataggtg
ttttgcctgcatatatacatatcatatatgcatgcctggtgcccatggag
gccagaagaaggcattggatcccctggaacttgagttagagatagttaag
agccattgtgtagatcctggtaaccaaaatcagcttctctggaagagtag
ttggtgctcttaactgctgagtcatctctccagccactgttttgagaatt
ctttaagatgcaaatttgttctcaggaggttgattttcatatcttccttt
tccattggcgtttgtcattctcctaaaatatcttttgaggaatagaagtt
gtgtatgtgtgtgcatgtgtgtacaaatggatgtgggtgtgtgttcaaca
tggatgtaagtgcatgtgtgaaggtagaggccagagatttatgctgaatg
tcttctctgttgctttccactgtgctttttgggtcagtgtctccttgaac
ctgaagctcattgattatctggctagcaagttccagggacctgcctgtca
gtgttctccctctcacaccctccactggggttacaggcagtggctccatg
cccagcttttccgtggggcagatgatccaaacacagatgtgacctcatcg
tgtttgcacaggaagtgccttattgactgagccacctccttcagcaccta
gattctacagcacctacagttctgatgaagtaccagcttaaagattgacc
tccagggactgtgcattcagtgaccatagatcatacaaaatatcttctat
atattcttatagttttactttattgatgttaaaagagatggcacctcact
ggattgctagctgcccccatacttctggattcaagtgatttttattaaat
ttgcttgtatgtgatacagatcagagttttgagaagcttttaagatttat
ttatgatatgggtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108119476_108120271
seq2: B6Ng01-065D01.b_37_835

seq1  GAATTCTCTTTTTTTAAAAAAAAAAGTGATAAAACCTAAAATATCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTTTTAAAAAAAAAAGTGATAAAACCTAAAATATCTTAAA  50

seq1  AGTTGGATTCATTTATCAATTTAAAGTGATGTGTTAATAAATTCAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATTCATTTATCAATTTAAAGTGATGTGTTAATAAATTCAATGTC  100

seq1  AGTGATCAAGTATTAAATTGATACAGAATAACTACTTATCGATTTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAAGTATTAAATTGATACAGAATAACTACTTATCGATTTATTAA  150

seq1  TTCTAGGTGCGTATGTGTGTGCCTGAGTGTATGTCTGTGCACCACTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTGCGTATGTGTGTGCCTGAGTGTATGTCTGTGCACCACTTCTG  200

seq1  TGTAGGTGCCCTCAGGGGCCAAAAAGGGCACCAGATCTCCTGTAACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGCCCTCAGGGGCCAAAAAGGGCACCAGATCTCCTGTAACTAAA  250

seq1  GTCATAGGTGGTTGTGAGCCGGGGACTGAACCCAGGTCCTCTGCAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGGTGGTTGTGAGCCGGGGACTGAACCCAGGTCCTCTGCAGGAGC  300

seq1  AACAGTGCTTTTAACCACTAAGCAATTTCCAGCCCAAGAAGGAATGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCTTTTAACCACTAAGCAATTTCCAGCCCAAGAAGGAATGTTCT  350

seq1  GCAGCTGCCCTTCATTCTCCCTTCCTGTCTGATCCAGAAGTAATACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCCCTTCATTCTCCCTTCCTGTCTGATCCAGAAGTAATACAGAA  400

seq1  TCATACGGAATCCAAAGGCTGTAAAAATTCACAATACGTACAGCAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACGGAATCCAAAGGCTGTAAAAATTCACAATACGTACAGCAAAACT  450

seq1  CCCCCAGTTCTGTTGTGCTTTACCCTATCCTCGGTCATAAACACTTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTTCTGTTGTGCTTTACCCTATCCTCGGTCATAAACACTTACTC  500

seq1  TCCTTCACACGTGTTCCTAACTTTTCCTTGTGTACACTAGCATTGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACACGTGTTCCTAACTTTTCCTTGTGTACACTAGCATTGATTTT  550

seq1  TATCAGAACAGATAGAGGGGCCCAGTGACCTCGAGGTTGTCTTTAGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAACAGATAGAGGGGCCCAGTGACCTCGAGGTTGTCTTTAGGGTA  600

seq1  CTGAGATGACCCTTAGGTTTAAACAGAAGAACTGGGACAGGAGACAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGACCCTTAGGTTTAAACAGAAGAACTGGGACAGGAGACAAACA  650

seq1  GCCTTGGTCAAGTCATGATCCTGCTTATCACTGTACAACCTCTAATTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCAAGTCATGATCCTGCTTATCACTGTACAACCTCTAATTCTG  700

seq1  AAAGGTTGTCAAGAATAAATTGCTC-TTCAGCCAG-TTGATGTATATCTC  748
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  AAAGGTTGTCAAGAATAAATTGCTCTTTCAGCCAGTTTGATGTATATCTC  750

seq1  TCCCATAAATGACTGCTCTCTTCTT-GGCAGGGGGGTGGTGGGGGGGGG  796
      ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCCATAAATGACTGCTCTCTTCTTGGGCAGGGGGGTGGTGGGGGGGGG  799

seq1: chr5_108267728_108268701
seq2: B6Ng01-065D01.g_66_1032 (reverse)

seq1  AAACACCCATATACATAAAATAAAAATCTTAAAAAGCTTCTCAAAACTCT  50
      |||||||||||| |||||   | ||||||| |||||||||||||||||||
seq2  AAACACCCATAT-CATAA---ATAAATCTT-AAAAGCTTCTCAAAACTCT  45

seq1  GATCTTGTATCACATACAAGCAAATTTAATAAAAATCACTTGAATCCAGA  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATC-TGTATCACATACAAGCAAATTTAATAAAAATCACTTGAATCCAGA  94

seq1  AGTATGGGGGGCAGCTAGCAATCCAGTGAGGTGCCATCTCTTTTAACATC  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAT-GGGGGCAGCTAGCAATCCAGTGAGGTGCCATCTCTTTTAACATC  143

seq1  AATAAAGTAAAACTATAAGAATATATAGAAGATATTTTGTATGATCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTAAAACTATAAGAATATATAGAAGATATTTTGTATGATCTATG  193

seq1  GTCACTGAATGCACAGTCCCTGGAGGTCAATCTTTAAGCTGGTACTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAATGCACAGTCCCTGGAGGTCAATCTTTAAGCTGGTACTTCAT  243

seq1  CAGAACTGTAGGTGCTGTAGAATCTAGGTGCTGAAGGAGGTGGCTCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGTAGGTGCTGTAGAATCTAGGTGCTGAAGGAGGTGGCTCAGTC  293

seq1  AATAAGGCACTTCCTGTGCAAACACGATGAGGTCACATCTGTGTTTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCACTTCCTGTGCAAACACGATGAGGTCACATCTGTGTTTGGAT  343

seq1  CATCTGCCCCACGGAAAAGCTGGGCATGGAGCCACTGCCTGTAACCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCCACGGAAAAGCTGGGCATGGAGCCACTGCCTGTAACCCCAG  393

seq1  TGGAGGGTGTGAGAGGGAGAACACTGACAGGCAGGTCCCTGGAACTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGTGTGAGAGGGAGAACACTGACAGGCAGGTCCCTGGAACTTGCT  443

seq1  AGCCAGATAATCAATGAGCTTCAGGTTCAAGGAGACACTGACCCAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATAATCAATGAGCTTCAGGTTCAAGGAGACACTGACCCAAAAAG  493

seq1  CACAGTGGAAAGCAACAGAGAAGACATTCAGCATAAATCTCTGGCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGAAAGCAACAGAGAAGACATTCAGCATAAATCTCTGGCCTCTA  543

seq1  CCTTCACACATGCACTTACATCCATGTTGAACACACACCCACATCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACACATGCACTTACATCCATGTTGAACACACACCCACATCCATTT  593

seq1  GTACACACATGCACACACATACACAACTTCTATTCCTCAAAAGATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACATGCACACACATACACAACTTCTATTCCTCAAAAGATATTTT  643

seq1  AGGAGAATGACAAACGCCAATGGAAAAGGAAGATATGAAAATCAACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGACAAACGCCAATGGAAAAGGAAGATATGAAAATCAACCTCC  693

seq1  TGAGAACAAATTTGCATCTTAAAGAATTCTCAAAACAGTGGCTGGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAATTTGCATCTTAAAGAATTCTCAAAACAGTGGCTGGAGAGA  743

seq1  TGACTCAGCAGTTAAGAGCACCAACTACTCTTCCAGAGAAGCTGATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGCAGTTAAGAGCACCAACTACTCTTCCAGAGAAGCTGATTTTG  793

seq1  GTTACCAGGATCTACACAATGGCTCTTAACTATCTCTAACTCAAGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAGGATCTACACAATGGCTCTTAACTATCTCTAACTCAAGTTCCA  843

seq1  GGGGATCCAATGCCTTCTTCTGGCCTCCATGGGCACCAGGCATGCATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCCAATGCCTTCTTCTGGCCTCCATGGGCACCAGGCATGCATATA  893

seq1  TGATATGTATATATGCAGGCAAAACACCTATACCCACAAGATCAAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTATATATGCAGGCAAAACACCTATACCCACAAGATCAAATAAA  943

seq1  AATAATTAAAAAAAAAAAGAATTC  974
      ||||||||||||||||||||||||
seq2  AATAATTAAAAAAAAAAAGAATTC  967