BAC Information

Click to search

BAC

Clone NameB6Ng01-065L04
Chromosome5 (Build37)
Map Location 14,754,884 - 14,756,096
singlet/doubletsinglet
Overlap genePclo
Upstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065L04.bB6Ng01-065L04.g
ACCDH885095DH885096
length1,2661,175
definitionDH885095|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L04, 5' end.DH885096|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacccactatttttgatgaagctttgcatgaggacctgggtaagt
acagagtcaataacccagacataacccttatgcagtaggtaggtgatctt
ttaattgcagcagaaatcagagaggggtgcaagaaaggggctcagagtct
cctacaagctctggggaatatgggatatagggtgtctgccaagaaatcat
agctctgtaagactgaagtcaactgtctcagttatatcctgaaggagggc
cagtggtggctttctacagcaagaaaagagactgttctcaaattccccac
accccagagcccaggacaggtaagagagtccttagggtcttcaggctttt
gcagaccatggatcccaggctttgtagaaatagccaaacctttatataaa
gccaccaaagaagccaaggactttgtttggactcaagattatcaaagggc
ttttgagagaataaagcaggtcctgcagttcagctcctgctttggggctg
ccagacatcaccaagccatttcacttgtatgtccacgaatggaaaggaat
agcaaaaggggtcttgactcaaactctaggactatggaattggcctgtag
cttatttgtcaaaaaaattagatcaagtggcagcatgatggccactttgc
ctgagtatcattgcggcctcagcattactgttaaggatgcagataagttg
actttgggacaaaatttagccctgactaccccactcccccaagcaataga
acgggtactcaaacagtctcctgacaggtagctcagtaatgcccgcatga
ctcattatcagaccttactaataaccctggctgagttactctccagctgc
ctgcttccttaatcctgagatccttcctcctgaccgtgatatggagcgcc
cactccaccaatgcatgaaatcttggcccaggtacacagtactcgaccta
acctacactcccactccctctgccaggagcagagcagacttggttcacag
atggaagctgttcatctggaggtcagaggaaagcaggagcagtgttacca
tggaaacaggtatttggtcagtcctctcccacaggacctcaggtcaggct
gactgtatagcgcttccctatcatgggaagctgctgcacacttatgaagc
tgtaatggcatggactgttccatactggagagttactgctctcatctcaa
gaaaacttgcaaaccagataactcaatactctgatgactctgcgtgccac
aggagaggatgggact
gaattccaatagtcattctgcatttctgattgagaacaaagtcttggata
aaaaaaaaattctctctcattaaaatgtcttaaattttgtataatctata
catacccaccaatgtaagattatagtaatcttaccgaaccttactaatta
ggttcatataatgcccaatatgatataaatctagctgatacttgctatat
tatgttgcttagaggtcagtgacaggtaaacagtctgttataggaatcac
agatgcacttagtaatatgtatgatgctgagaattgaagccaggtcctca
ctggaaacactaaatttaccaggtattcataagaacagtcttaaaattta
tagaccatattccttctttgtttctcatgttttaaattgagctatattta
ttaaaacttactgagaacttttgattaaattttaatcattaaataccttt
tactatttacagtatctgacacaagtaaaaacggattatttgctgtcatc
ttggtgatgtaaagaatggagtattgatatttcttatgaagcagcttaac
acataatttggtttatttcttgaaaattctcccagaatgatgaaatgttt
attgacacttatattaatctgcatttacatcttttatttatctaatgatg
aaattgtacattcagtttatccccttaattttagtttttataatggacat
attttattatgtatgctcagcagaatgatctgttatagatatcatttcat
ttctgcctgtttgatttattgaaaataagtttcttttcttatagaaatag
tgtggctataattcccactccatctactccttctagttccgtccctctgg
atccactcccttcctccctcttgttagaaaagagaagcttctaagagatt
aaaaccaaacatgacaaatatatatagatgaagccaactttcatatcaaa
gttgacacaccaacagagaaaagagtcccaagaacagcaatgcagtcaga
ttgtctcattctcccactcagggttccataaaaacaccaagctagtacta
catgtatgcatacaggacttgttaggaggtgcatcctgcctgctgtttca
tctctgtgacctaatgtcctctgcgaccaagaaagaatgattcctgttcc
tcgacttacaacttttgtcttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14754884_14756096
seq2: B6Ng01-065L04.g_69_1243

seq1  GAATTCCAATAGTCATTCTGCATTTCTGATTGAGAACAAAGTCTTGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAGTCATTCTGCATTTCTGATTGAGAACAAAGTCTTGGATA  50

seq1  AAAAAAAAATTCTCTCTCATTAAAATGTCTTAAATTTTGTATAATCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTCTCTCTCATTAAAATGTCTTAAATTTTGTATAATCTATA  100

seq1  CATACCCACCAATGTAAGATTATAGTAATCTTACCGAACCTTACTAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCACCAATGTAAGATTATAGTAATCTTACCGAACCTTACTAATTA  150

seq1  GGTTCATATAATGCCCAATATGATATAAATCTAGCTGATACTTGCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATATAATGCCCAATATGATATAAATCTAGCTGATACTTGCTATAT  200

seq1  TATGTTGCTTAGAGGTCAGTGACAGGTAAACAGTCTGTTATAGGAATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGCTTAGAGGTCAGTGACAGGTAAACAGTCTGTTATAGGAATCAC  250

seq1  AGATGCACTTAGTAATATGTATGATGCTGAGAATTGAAGCCAGGTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACTTAGTAATATGTATGATGCTGAGAATTGAAGCCAGGTCCTCA  300

seq1  CTGGAAACACTAAATTTACCAGGTATTCATAAGAACAGTCTTAAAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACACTAAATTTACCAGGTATTCATAAGAACAGTCTTAAAATTTA  350

seq1  TAGACCATATTCCTTCTTTGTTTCTCATGTTTTAAATTGAGCTATATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATATTCCTTCTTTGTTTCTCATGTTTTAAATTGAGCTATATTTA  400

seq1  TTAAAACTTACTGAGAACTTTTGATTAAATTTTAATCATTAAATACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTACTGAGAACTTTTGATTAAATTTTAATCATTAAATACCTTT  450

seq1  TACTATTTACAGTATCTGACACAAGTAAAAACGGATTATTTGCTGTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTACAGTATCTGACACAAGTAAAAACGGATTATTTGCTGTCATC  500

seq1  TTGGTGATGTAAAGAATGGAGTATTGATATTTCTTATGAAGCAGCTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATGTAAAGAATGGAGTATTGATATTTCTTATGAAGCAGCTTAAC  550

seq1  ACATAATTTGGTTTATTTCTTGAAAATTCTCCCAGAATGATGAAATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTTGGTTTATTTCTTGAAAATTCTCCCAGAATGATGAAATGTTT  600

seq1  ATTGACACTTATATTAATCTGCATTTACATCTTTTATTTATCTAATGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACTTATATTAATCTGCATTTACATCTTTTATTTATCTAATGATG  650

seq1  AAATTGTACATTCAGTTTATCCCCTTAATTTTAGTTTTTATAATGGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTACATTCAGTTTATCCCCTTAATTTTAGTTTTTATAATGGACAT  700

seq1  ATTTTATTATGTATGCTCAGCAGAATGATCTGTTATAGATATCATTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATGTATGCTCAGCAGAATGATCTGTTATAGATATCATTTCAT  750

seq1  TTCTGCCTGTTTGATTTATTGAAAATAAGTTTCTTTTCTTATAGAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGTTTGATTTATTGAAAATAAGTTTCTTTTCTTATAGAAATAG  800

seq1  TGTGGCTATAATTCCCACTCCATCTACTCCTTCTAGTTCCGTCCCTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTATAATTCCCACTCCATCTACTCCTTCTAGTTCCGTCCCTCTGG  850

seq1  ATCCACTCCCTTCCTCCCTCTTGTTAGAAAAAGAGAAGGCTTCTAAGAGA  900
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  ATCCACTCCCTTCCTCCCTCTTGTTAG-AAAAGAGAA-GCTTCTAAGAGA  898

seq1  TTAAAAACCAAACATGACAAAATATAATATAAGATGAAGCCAAACTTTCA  950
      || ||||||||||||||| |||||| |||| |||||||||| ||||||||
seq2  TT-AAAACCAAACATGAC-AAATAT-ATAT-AGATGAAGCC-AACTTTCA  943

seq1  TATCAAAGTTGGACACAACCAACAGGAGGAAAAGAGTCCCAAGAACAAGC  1000
      |||||||||| ||||| ||||||||   |||||||||||||||||| |||
seq2  TATCAAAGTT-GACAC-ACCAACAG--AGAAAAGAGTCCCAAGAAC-AGC  988

seq1  AATGCAGTCAGATTGTCTCATTCTCCCACTCAGGGGTCCCATAAAAACAC  1050
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  AATGCAGTCAGATTGTCTCATTCTCCCACTCA-GGGTTCCATAAAAACAC  1037

seq1  CAAGCTAGTACCTACAATGTATGCATACAGGACTTGTTATAGAGGGGTGC  1100
      |||||||||| |||| |||||||||||||||||||||||    | |||||
seq2  CAAGCTAGTA-CTAC-ATGTATGCATACAGGACTTGTTA---GGAGGTGC  1082

seq1  AGTCCTGTGCTTGCTGTTTCAATCTCTGTGAGCTTATATGCTCTTCCTTG  1150
      | |||  ||| ||||||||| |||||||||| || || | |||| |    
seq2  A-TCC--TGCCTGCTGTTTC-ATCTCTGTGACCTAATGTCCTCTGC----  1124

seq1  CTGACTCAGAGAAGAAATGGTATTCTCTGTTCCTCTGACTCTTACAATCT  1200
        ||| || ||||  ||||  |||| ||||||||| ||  ||||||| ||
seq2  --GAC-CA-AGAAAGAATG--ATTC-CTGTTCCTC-GA--CTTACAA-CT  1163

seq1  TTCTGTCTTTTCT  1213
      || ||||||||||
seq2  TT-TGTCTTTTCT  1175