BAC Information

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BAC

Clone NameB6Ng01-067B15
Chromosome5 (Build37)4 (Build37)
Map Location 20,467,921 - 20,468,846116,778,841 - 116,779,063
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l
Downstream genePtpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067B15.bB6Ng01-067B15.g
ACCDH886093DH886094
length930607
definitionDH886093|Mus musculus domesticus DNA, BAC clone: B6Ng01-067B15, 5' end.DH886094|Mus musculus domesticus DNA, BAC clone: B6Ng01-067B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,467,921 - 20,468,846)(116,778,841 - 116,779,063)
sequence
gaattcaggccaaccttggttatgtagcaaactaattcaacagataaggc
caacaaaaacacaagcaacaccacctgtgtggatggactgtgagcaaaat
cagggtcacgtgcttttctccagtctgaccttctcctggctctcgtactc
acgtcttgctctttttacgtgagttaccaggaatactagacatcaggaaa
agaaaaatcagaaatgaataaaacaatagaatgagcccagaaggccgagt
tggacaacgtcctcttctcagggcagtcacagattgttgcgtgaaatgtt
caaaatgaacccgccaactctctgcactcctgcttctctcaacccgccaa
ctctttggccctaccaggccacagggctcccgcccgggtgctctcaactc
ggcggtctctcaacgggatcaactctctggcacccacccacccatcccca
ggcccccctcgctaccacgaaacacctcatgcaccccacggtcagccatc
tcatctcaacacccatttactcaagtagaatcaaaactctttggtttttt
tccaagacagggtttctcgcagggcgtggtgacgcacgcctttaatccca
gctctggggaggctgaggcaggcagatttctgagttcgaagccagcctgg
tctacaaagtgagttccaggacggtcagggctatacagagaaaccctgtc
tcgaaaaagaaaaaaaaaaacaaaaaaacaaaaaaaaaccaaactgacgc
atccttcctgttttgtgtcctctataccatccctgtgtgtcctttccctg
aaaagtcatctttctcgagcctcccttccccacccgttccccagtccctc
cctcaaagcagggttgttctacatttacttcactggaccaacctgtgaca
agaagcttctccaaaactcctctccgcctt
gaattcactcctagtcactcccattctcagggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatagcaggggctagacatatcatg
gttactaaagtttagggcaggtggggtgtgcagagctaagagtattgata
agggcatactagcagtgggagtttaataatgcccagcaattgtgccaaga
acgcaagctgaaaatgaacaactgtggggctggtgagatggctcagtggg
taagagcacccgactgctcttccgaaggtccagagttcaaatcccagcaa
ccacatggtggctcacaaccatctgtaatgagatctgactccctcttctg
gagtgtctgaagacagctacagtgtacttacatataataaataaatctta
aaaaaaaaaaaaaaaaaaaaaaaaagaaaatgaacaactgtgtgtgtgtg
tgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20467921_20468846
seq2: B6Ng01-067B15.b_47_976

seq1  GAATTCAGGCCAACCTTGGTTATGTAGCAAACTAATTCAACAGATAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCAACCTTGGTTATGTAGCAAACTAATTCAACAGATAAGGC  50

seq1  CAACAAAAACACAAGCAACACCACCTGTGTGGATGGACTGTGAGCAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAACACAAGCAACACCACCTGTGTGGATGGACTGTGAGCAAAAT  100

seq1  CAGGGTCACGTGCTTTTCTCCAGTCTGACCTTCTCCTGGCTCTCGTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCACGTGCTTTTCTCCAGTCTGACCTTCTCCTGGCTCTCGTACTC  150

seq1  ACGTCTTGCTCTTTTTACGTGAGTTACCAGGAATACTAGACATCAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTTGCTCTTTTTACGTGAGTTACCAGGAATACTAGACATCAGGAAA  200

seq1  AGAAAAATCAGAAATGAATAAAACAATAGAATGAGCCCAGAAGGCCGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCAGAAATGAATAAAACAATAGAATGAGCCCAGAAGGCCGAGT  250

seq1  TGGACAACGTCCTCTTCTCAGGGCAGTCACAGATTGTTGCGTGAAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACGTCCTCTTCTCAGGGCAGTCACAGATTGTTGCGTGAAATGTT  300

seq1  CAAAATGAACCCGCCAACTCTCTGCACTCCTGCTTCTCTCAACCCGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAACCCGCCAACTCTCTGCACTCCTGCTTCTCTCAACCCGCCAA  350

seq1  CTCTTTGGCCCTACCAGGCCACAGGGCTCCCGCCCGGGTGCTCTCAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGCCCTACCAGGCCACAGGGCTCCCGCCCGGGTGCTCTCAACTC  400

seq1  GGCGGTCTCTCAACGGGATCAACTCTCTGGCACCCACCCACCCATCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTCTCTCAACGGGATCAACTCTCTGGCACCCACCCACCCATCCCCA  450

seq1  GGCCCCCCTCGCTACCACGAAACACCTCATGCACCCCACGGTCAGCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCCTCGCTACCACGAAACACCTCATGCACCCCACGGTCAGCCATC  500

seq1  TCATCTCAACACCCATTTACTCAAGTAGAATCAAAACTCTTTGGTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAACACCCATTTACTCAAGTAGAATCAAAACTCTTTGGTTTTTT  550

seq1  TCCAAGACAGGGTTTCTCGCAGGGCGTGGTGACGCACGCCTTTAATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACAGGGTTTCTCGCAGGGCGTGGTGACGCACGCCTTTAATCCCA  600

seq1  GCTCTGGGGAGGCTGAGGCAGGCAGATTTCTGAGTTCGAAGCCAGCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGAGGCTGAGGCAGGCAGATTTCTGAGTTCGAAGCCAGCCTGG  650

seq1  TCTACAAAGTGAGTTCCAGGACGGTCAGGGCTATACAGAGAAACCCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTCCAGGACGGTCAGGGCTATACAGAGAAACCCTGTC  700

seq1  TCGAAAAAGAAAAAAAAAAACAAAAAAACAAAAAAAAACCAAACTGACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAAAGAAAAAAAAAAACAAAAAAACAAAAAAAAACCAAACTGACGC  750

seq1  ATCCTTCCTG-TTTGTGTCCTCTATACCATCCCTGTGTGTCC-TTCCCTG  798
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  ATCCTTCCTGTTTTGTGTCCTCTATACCATCCCTGTGTGTCCTTTCCCTG  800

seq1  AAAAGTCATC-TTCCCGAGCCTCCCTTCCCCACCCG-TCCCCAGTCCCTC  846
      |||||||||| ||| ||||||||||||||||||||| |||||||||||||
seq2  AAAAGTCATCTTTCTCGAGCCTCCCTTCCCCACCCGTTCCCCAGTCCCTC  850

seq1  CCTCAAAGCAGGGTTGTTCTACACTTACTTCACTGGACCAACCTGTGAAC  896
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  CCTCAAAGCAGGGTTGTTCTACATTTACTTCACTGGACCAACCTGTG-AC  899

seq1  AAGAGGCTTCACCAAAACT-CTCTCCGCCTT  926
      |||| ||||| |||||||| |||||||||||
seq2  AAGAAGCTTCTCCAAAACTCCTCTCCGCCTT  930

seq1: chr4_116778841_116779063
seq2: B6Ng01-067B15.g_444_674 (reverse)

seq1  ACACACACACACACACACAGTGTTCCATTCTCATTCATTTCTTTCTTTTT  50
      |||||||||||||||||||||  | |||| || ||  ||| ||| |||||
seq2  ACACACACACACACACACAGTTGTTCATTTTCTTTTTTTTTTTTTTTTTT  50

seq1  TTTTTTTT--------TTTATTATATTTAAGTACACTGTAGCTGTCCTCA  92
      ||||||||        |||||||||| ||||||||||||||||||| |||
seq2  TTTTTTTTAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCA  100

seq1  GACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCAC  142
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GACACTCCAGAAGAGGGAGTCAGATCTCATTACAGATGGTTGTGAGCCAC  150

seq1  CATGTGGTTGCTGGGATTTGAACTCCTGACCTTCAGAAGAGCAGTCGGGT  192
      |||||||||||||||||||||||||  ||||||| |||||||||||||||
seq2  CATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGT  200

seq1  GCTCTTACCCACTGAGCCATCTCACCAGCCC  223
      |||||||||||||||||||||||||||||||
seq2  GCTCTTACCCACTGAGCCATCTCACCAGCCC  231