BAC Information

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BAC

Clone NameB6Ng01-067L09
Chromosome5 (Build37)
Map Location 6,238,057 - 6,427,121
singlet/doubletdoublet
Overlap geneLOC100041208
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067L09.bB6Ng01-067L09.g
ACCDH886510DH886511
length8151,056
definitionDH886510|Mus musculus domesticus DNA, BAC clone: B6Ng01-067L09, 5' end.DH886511|Mus musculus domesticus DNA, BAC clone: B6Ng01-067L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,238,057 - 6,238,870)(6,426,054 - 6,427,121)
sequence
gaattctttgactcaggaatctatctatctatctctatctatctatctat
ctatctatctatctatctatctatctatctatctatctacatatctatct
atctatctatctacatatctatctatctatctatctatctatctatctat
ctatctatctatctatctccttccagtcttttgcctatatattatggttt
ctagttttgtgtttttatggaatttctgtgtgtgcaaatctgtgtgtctt
tgtgtttatgtgtgttttctttgggtctgtttttttttcagtttgttttg
ttttattctcatttctatattttgttttatattattttaatttattgttg
ttttaggcaccttttgttttataaagaagaaaagaaaggctgtggatttg
gaagggaaatggaagtaggaaggatataggaatttggggagagtaaaaca
taatcaaatatgttatatgaagaaaaaccttaattttcaataagggaaaa
ttagctaactttaaaaaagaaaaaaagaacagaattagagtgagtaggaa
ccctgtctcattttacattttaaagacaaggttctttgttgtccatttag
taataggttgccttaggcttctaattataggtatttctcttttaaggtat
attccttttattcttagtttctttaacatgaagggtatttattaaacttt
gttgaaaattattttctttatagactcctattatgtaatttctcttgtca
aacctactgataagttgaatatatatatatatatatatatatatatatat
atatatgtatatata

gaattcattcggggaagaaaccgtatgaacataaggaatgtcagaaaacc
ttcatccagattggatactttaaccaacataagagagtccataccaggga
gagaacgtacaactacaagaagggcaggagggccttcaggcagactgcac
actttgctcaccatcagcaaattcattccggagagtcacctgctcaccac
tctttgccttccacatcgaatcctgtgaatctcttctacaaattcgtctg
gaatccatcctcactgccatcatcataatctcatattttcaccacacttg
tttatcaacttgtctctttgtccctttgttcattcttgtcccttatgagt
ccttcatattacaaccaggttggattatttttggagtgtaaatgtaatta
atttgctcatataaagcttatattcactggggaaaaaaaaagaagttagc
tcaaacataaagaaacctcatgaatctaagaaatgttccatatcttgctc
tgggtagtatatctgtaaatcttagcaagccctgtatgtagtattttaag
aactttctgactttgttatcctttaatttttaatgctgttatattaagaa
aaacacatttataataaatatggtattttaaataaaaagtattatatctt
atagctattttttcagataaacaaaaacaaattttgatacaaagtaaaat
atgtataaggttggtgttccagaacaaaatctgcaggaatatttacagca
tggtataaagcaacgaaaccaggtcatccaccaacatttttgccttagat
tttctaatatttcagcattttagtagcacagtattaaaacactataggta
gtagcattttcacagaattcaagccaaacatttagatgttcttcatcaat
tatatagttttgaaaagccaaataaaagatcaaatatactgtattctgga
acaccaatacaacagtgaaatagaaattcttgtacttatgctgtgggtct
ttctgaacaaattcaactctcattgaagtgcagcaggtaattaagaatct
ctaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6238057_6238870
seq2: B6Ng01-067L09.b_48_862

seq1  GAATTCTTTGACTCAGGAATCTATCTATCTATCTCTATCTATCTATCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACTCAGGAATCTATCTATCTATCTCTATCTATCTATCTAT  50

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTACATATCTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTACATATCTATCT  100

seq1  ATCTATCTATCTACATATCTATCTATCTATCTATCTATCTATCTATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTACATATCTATCTATCTATCTATCTATCTATCTATCTAT  150

seq1  CTATCTATCTATCTATCTCCTTCCAGTCTTTTGCCTATATATTATGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTCCTTCCAGTCTTTTGCCTATATATTATGGTTT  200

seq1  CTAGTTTTGTGTTTTTATGGAATTTCTGTGTGTGCAAATCTGTGTGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTGTGTTTTTATGGAATTTCTGTGTGTGCAAATCTGTGTGTCTT  250

seq1  TGTGTTTATGTGTGTTTTCTTTGGGTCTGTTTTTTTTTCAGTTTGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATGTGTGTTTTCTTTGGGTCTGTTTTTTTTTCAGTTTGTTTTG  300

seq1  TTTTATTCTCATTTCTATATTTTGTTTTATATTATTTTAATTTATTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTCATTTCTATATTTTGTTTTATATTATTTTAATTTATTGTTG  350

seq1  TTTTAGGCACCTTTTGTTTTATAAAGAAGAAAAGAAAGGCTGTGGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCACCTTTTGTTTTATAAAGAAGAAAAGAAAGGCTGTGGATTTG  400

seq1  GAAGGGAAATGGAAGTAGGAAGGATATAGGAATTTGGGGAGAGTAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAATGGAAGTAGGAAGGATATAGGAATTTGGGGAGAGTAAAACA  450

seq1  TAATCAAATATGTTATATGAAGAAAAACCTTAATTTTCAATAAGGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAATATGTTATATGAAGAAAAACCTTAATTTTCAATAAGGGAAAA  500

seq1  TTAGCTAACTTTAAAAAAGAAAAAAAGAACAGAATTAGAGTGAGTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAACTTTAAAAAAGAAAAAAAGAACAGAATTAGAGTGAGTAGGAA  550

seq1  CCCTGTCTCATTTTACATTTTAAAGACAAGGTTCTTTGTTGTCCATTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCATTTTACATTTTAAAGACAAGGTTCTTTGTTGTCCATTTAG  600

seq1  TAATAGGTTGCCTTAGGCTTCTAATTATAGGTATTTCTCTTTTAAGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGTTGCCTTAGGCTTCTAATTATAGGTATTTCTCTTTTAAGGTAT  650

seq1  ATTCCTTTTATTCTTAGTTTCTTTAACATGAAGGGTATTTATTAAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTATTCTTAGTTTCTTTAACATGAAGGGTATTTATTAAACTTT  700

seq1  GTTG-AAATTATTTTCTTTATAGACTCCTATTATGTAATTTCTCTTGTCA  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAATTATTTTCTTTATAGACTCCTATTATGTAATTTCTCTTGTCA  750

seq1  AACCTACTGATAAGTTGAATATATATATATATATATATATATATATATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACTGATAAGTTGAATATATATATATATATATATATATATATATAT  800

seq1  ATATATATATATATA  814
      |||||| ||||||||
seq2  ATATATGTATATATA  815


seq1: chr5_6426054_6427121
seq2: B6Ng01-067L09.g_69_1124 (reverse)

seq1  GCCTAAGAGATTTCTTAATTAACCTGCTGCCACTGTCAATGAGAGTTGAA  50
      |||| ||||| ||||||||| |||||||| |||| |||||||||||||||
seq2  GCCT-AGAGA-TTCTTAATT-ACCTGCTG-CACT-TCAATGAGAGTTGAA  45

seq1  TGTTGTTTCAAGAAAGACCCACAGCATAAGTACATAGAATTTTCTTATGT  100
      | |||||   |||||||||||||||||||||||| |||||||   ||| |
seq2  T-TTGTT--CAGAAAGACCCACAGCATAAGTACA-AGAATTT--CTAT-T  88

seq1  TCACTGTTTGTATTGGTGTTCCAAGAATACAGTATATTTTGATCTTTTAT  150
      |||||| ||||||||||||||| ||||||||||||| |||||||||||||
seq2  TCACTG-TTGTATTGGTGTTCC-AGAATACAGTATA-TTTGATCTTTTAT  135

seq1  TTGGCTTATCAAAAACTATATAATTGATGAAGAACATCTAAATGTTTGGC  200
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTTC-AAAACTATATAATTGATGAAGAACATCTAAATGTTTGGC  184

seq1  TTGAATTCTGTG-AAATGCTACTACCTATAGTGTTTTAATACTGTGCTAC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTGTGAAAATGCTACTACCTATAGTGTTTTAATACTGTGCTAC  234

seq1  TAATATGCTGAAATATTAGAAAATCTAAGGC-AAAATGTTGGTGGATGAC  298
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAAATGCTGAAATATTAGAAAATCTAAGGCAAAAATGTTGGTGGATGAC  284

seq1  CTGGTTTCGTTGCTTTATACCATGCTGTAAATATTCCTGCAGATTTTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCGTTGCTTTATACCATGCTGTAAATATTCCTGCAGATTTTGTT  334

seq1  CTGGAACACCAACCTTATACATATTTTACTTTGTATC-AAATTTGTTTTT  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGGAACACCAACCTTATACATATTTTACTTTGTATCAAAATTTGTTTTT  384

seq1  GTTTATCTG-AAAAATAGCTATAAGATATAATACTTTTTATTTAAAATAC  446
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTGAAAAAATAGCTATAAGATATAATACTTTTTATTTAAAATAC  434

seq1  CATATTTATTATAAATGTGTTTTTCTTAATATAACAGCATTAAAAATTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATTATAAATGTGTTTTTCTTAATATAACAGCATTAAAAATTAA  484

seq1  AGGATAACAAAGTCAGAAAGTTCTTAAAATACTACATACAGGGCTTGCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAACAAAGTCAGAAAGTTCTTAAAATACTACATACAGGGCTTGCTA  534

seq1  AGATTTACAGATATACTACCCAGAGCAAGATATGGAACATTTCTTAGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACAGATATACTACCCAGAGCAAGATATGGAACATTTCTTAGATT  584

seq1  CATGAGGTTTCTTTATGTTTGAGCTAACTTCTTTTTTTTTCCCCAGTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTTTCTTTATGTTTGAGCTAACTTCTTTTTTTTTCCCCAGTGAA  634

seq1  TATAAGCTTTATATGAGCAAATTAATTACATTTACACTCCAAAAATAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTTTATATGAGCAAATTAATTACATTTACACTCCAAAAATAATC  684

seq1  CAACCTGGTTGTAATATGAAGGACTCATAAGGGACAAGAATGAACAAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGTTGTAATATGAAGGACTCATAAGGGACAAGAATGAACAAAGG  734

seq1  GACAAAGAGACAAGTTGATAAACAAGTGTGGTGAAAATATGAGATTATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAGACAAGTTGATAAACAAGTGTGGTGAAAATATGAGATTATGA  784

seq1  TGATGGCAGTGAGGATGGATTCCAGACGAATTTGTAGAAGAGATTCACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCAGTGAGGATGGATTCCAGACGAATTTGTAGAAGAGATTCACAG  834

seq1  GATTCGATGTGGAAGGCAAAGAGTGGTGAGCAGGTGACTCTCCGGAATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGATGTGGAAGGCAAAGAGTGGTGAGCAGGTGACTCTCCGGAATGA  884

seq1  ATTTGCTGATGGTGAGCAAAGTGTGCAGTCTGCCTGAAGGCCCTCCTGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGATGGTGAGCAAAGTGTGCAGTCTGCCTGAAGGCCCTCCTGCC  934

seq1  CTTCTTGTAGTTGTACGTTCTCTCCCTGGTATGGACTCTCTTATGTTGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTAGTTGTACGTTCTCTCCCTGGTATGGACTCTCTTATGTTGGT  984

seq1  TAAAGTATCCAATCTGGATGAAGGTTTTCTGACATTCCTTATGTTCATAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATCCAATCTGGATGAAGGTTTTCTGACATTCCTTATGTTCATAC  1034

seq1  GGTTTCTTCCCCGAATGAATTC  1068
      ||||||||||||||||||||||
seq2  GGTTTCTTCCCCGAATGAATTC  1056


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