BAC Information

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BAC

Clone NameB6Ng01-068L16
Chromosome5 (Build37)
Map Location 88,003,982 - 88,005,174
singlet/doubletsinglet
Overlap geneSult1e1
Upstream geneTmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1
Downstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068L16.bB6Ng01-068L16.g
ACCDH887230DH887231
length1,0441,170
definitionDH887230|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L16, 5' end.DH887231|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattgtttgttcagttctgagccccattttttaatggggttattcgatt
tttcgaagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttactgacgatgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattatcgatcttacagcacatgccattgctgtt
ctttccaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctgattttatgtgaagttccttga
tccacttagatttgaccttagtacaaggatataagtatggattgattcgc
attcttctacatgataacaaccagttatgccagcaccatttattgaaaat
gctgtctttcttccactggatggttttagcttccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccaccagaggttcttt
tatccttgagaagacttttttgctatcctagattttttgttatttccaga
tgaatttgcaaattcctccttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattcaatctgtagattgctttttggcaagatagcca
ttttttacaatgtttatcctgccaatccattgagcatgggagatctctcc
atcttctgagaatcttcctttaatttctttcttcagagatttggagtttt
atcaacagatctttcacctccttattagagtcccaccaagataatttata
caatttgggacaataaaaaggtgttgtttcctaattcttcaagcggttta
ttctttgtttagagaaggccattgcttgttgagtttattttaat
gaattcagtagaagtagaagtcttttgaagtctgatggtttaaattcatt
tttttctaacttttatgtcaatgtaatttctaaatgtttgacagcaaaat
cacatttttcttatatataacataagcattgtcctctaacagtgttcaaa
gatttctaataaaaataatttgatgcctgcatatttaaactcattcattt
cattcatatacatatacatatacatatacatatatatgtatatatttctt
atacacagtcaacaaacaaggtaatttgaaactggaaactagataacctt
attttgagctaaatacatgcaaaattatatgaagaaactaaaacaacccc
aagaattataaagtcacttcaagaaaatatctaaagattcagctgcaaaa
acatatggctgttataaatatgcacttatatatttgtttaaatattattt
tatataacattataatatataaattagcatatttataatataacacatta
cattaatatattagtgtattaatatattataagttgacatatttatacat
ttatatattatataatagtctatttatataaataaaaatatgaatatgta
tagatttgtatataatacatattaatatataataaaatgtgcttgtatat
aaatgaatatataaatattatatttatatataagtaacatctggttattc
catgttcatgttacgttgtgaagccacttgattccaggcttgttgtgaca
gaaatatttgatgacatttatagttttcaactcatgtgtcttcctgctgc
tctctaggtgttcataatatgaacattggctgtgtttgatgccctgcaag
aattactgggctctcaaaagtcctattgcttctgaatgcctctcttaact
tcctgccacagctagcaccgtgtctttttcttctttcatttacttcctaa
agaaatactgagtttatctgatggtgtttgcaataagcttctaactttta
tgggtttgactaatttgagatgcctggcatgcaaacaattcacccctaat
attttcacatatattcaatatgtagaaagaaatggggaatctatactttt
tcttaagttcagattgacgagccatgtgaagaactgataatcttcccaaa
ctcaaattttgccatgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88003982_88005174
seq2: B6Ng01-068L16.g_69_1238 (reverse)

seq1  TATACATGGCACAAAAACTCTGAGTTTGGGGAAGGATTTTATCAGTCTTA  50
      ||||||||||    ||| | ||||||| ||||||    ||||||||  | 
seq2  TATACATGGC----AAAATTTGAGTTT-GGGAAG---ATTATCAGTTCTT  42

seq1  CACAT-GCTCTGTCAATACTGGACCTAAAGAAAAAGTATAGATTTCCCCA  99
      ||||| |||| |||||| || || || |||||||||||||||||  ||| 
seq2  CACATGGCTC-GTCAAT-CT-GAACTTAAGAAAAAGTATAGATT--CCCC  87

seq1  ATTTCTTTTCTTACATATTGAATATATGTG-AAATATTAAGGGGTGAATT  148
      ||||||||   ||||||||||||||||||| ||||||| |||||||||||
seq2  ATTTCTTT--CTACATATTGAATATATGTGAAAATATT-AGGGGTGAATT  134

seq1  TTGGTTTTGCCATGCACAGGCATCTCAAATTAGTCAAACCCAATAAAAGT  198
         ||||   ||||| ||||||||||||||||||||||||| ||||||||
seq2  ---GTTT--GCATGC-CAGGCATCTCAAATTAGTCAAACCC-ATAAAAGT  177

seq1  TAGAGGCTTTATTGCAAACACCCATCAGATAAACTCAGTATTTCTATAGG  248
      |||| || |||||||||||| |||||||||||||||||||||||| ||||
seq2  TAGAAGC-TTATTGCAAACA-CCATCAGATAAACTCAGTATTTCTTTAGG  225

seq1  AAGTAAATGAAAGAAGAAAAAGACACGGTGCTAGCTGTGGCAGGAAGTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGAAAGAAGAAAAAGACACGGTGCTAGCTGTGGCAGGAAGTTA  275

seq1  AGAGAGGCATTCAGAAGCAATAGGACTTTTGAGAGCCCAGTTATTCTTGC  348
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAGAGGCATTCAGAAGCAATAGGACTTTTGAGAGCCCAGTAATTCTTGC  325

seq1  AGGGCATCAAACACAGCCAATTGTTCATATTATGAACACCTAGAGAGCAG  398
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGGCATCAAACACAGCCAA-TGTTCATATTATGAACACCTAGAGAGCAG  374

seq1  CAGGAAGACACATGAGTTG-AAACTATAAATGTCATCAAATATTTCTGTC  447
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGGAAGACACATGAGTTGAAAACTATAAATGTCATCAAATATTTCTGTC  424

seq1  ACAACAAGCCTGGAATCAAGTGGCTTCACAACGTAACATGAACATGGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGCCTGGAATCAAGTGGCTTCACAACGTAACATGAACATGGAAT  474

seq1  AACCAGATGTTACTTATATATAAATATAATATTTATATATTCATTTATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATGTTACTTATATATAAATATAATATTTATATATTCATTTATAT  524

seq1  ACAAGCACATTTTATTATATATTAATATGTATTATATACAAATCTATACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACATTTTATTATATATTAATATGTATTATATACAAATCTATACA  574

seq1  TATTCATATTTTTATTTATATAAATAGACTATTATATAATATATAAATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATTTTTATTTATATAAATAGACTATTATATAATATATAAATGT  624

seq1  ATAAATATGTCAACTTATAATATATTAATACACTAATATATTAATGTAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATGTCAACTTATAATATATTAATACACTAATATATTAATGTAAT  674

seq1  GTGTTATATTATAAATATGCTAATTTATATATTATAATGTTATATAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATATTATAAATATGCTAATTTATATATTATAATGTTATATAAAAT  724

seq1  AATATTTAAACAAATATATAAGTGCATATTTATAACAGCCATATGTTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAACAAATATATAAGTGCATATTTATAACAGCCATATGTTTTT  774

seq1  GCAGCTGAATCTTTAGATATTTTCTTGAAGTGACTTTATAATTCTTGGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGAATCTTTAGATATTTTCTTGAAGTGACTTTATAATTCTTGGGG  824

seq1  TTGTTTTAGTTTCTTCATATAATTTTGCATGTATTTAGCTCAAAATAAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAGTTTCTTCATATAATTTTGCATGTATTTAGCTCAAAATAAGG  874

seq1  TTATCTAGTTTCCAGTTTCAAATTACCTTGTTTGTTGACTGTGTATAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGTTTCCAGTTTCAAATTACCTTGTTTGTTGACTGTGTATAAGA  924

seq1  AATATATACATATATATGTATATGTATATGTATATGTATATGAATGAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACATATATATGTATATGTATATGTATATGTATATGAATGAAAT  974

seq1  GAATGAGTTTAAATATGCAGGCATCAAATTATTTTTATTAGAAATCTTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTTTAAATATGCAGGCATCAAATTATTTTTATTAGAAATCTTTG  1024

seq1  AACACTGTTAGAGGACAATGCTTATGTTATATATAAGAAAAATGTGATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTTAGAGGACAATGCTTATGTTATATATAAGAAAAATGTGATTT  1074

seq1  TGCTGTCAAACATTTAGAAATTACATTGACATAAAAGTTAGAAAAAAATG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAAACATTTAGAAATTACATTGACATAAAAGTTAGAAAAAAATG  1124

seq1  AATTTAAACCATCAGACTTCAAAAGACTTCTACTTCTACTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAACCATCAGACTTCAAAAGACTTCTACTTCTACTGAATTC  1170