BAC Information

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BAC

Clone NameB6Ng01-068L22
Chromosome5 (Build37)
Map Location 148,830,935 - 149,011,269
singlet/doubletdoublet
Overlap geneC130038G02Rik, LOC100041819
Upstream geneLnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneSlc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068L22.bB6Ng01-068L22.g
ACCDH887242DH887243
length350777
definitionDH887242|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L22, 5' end.DH887243|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,830,935 - 148,831,282)(149,010,494 - 149,011,269)
sequence
acaggcagttttgagcaggcagaagcgactgtgcaactctcctgttgaat
gggctcatgagttcatgaaatggcaaagttgaacttacagaatgagaggt
tattaagctccaaaacaccgcagtaaccccacttttggatacttatcaaa
tggaaggaaatcatcctgttgagggaacagccacactcccgtgtgcaatc
agcttgtttgccacagccagaccctcttgttgagttttcctctgctgggg
ttcagagggcctggtgtggccggagaagggtaaagacactctcaagaact
gatagacacctgtgcctgctgccatttctctgcccctctcttgagatctc

gaattccaggacagccaaggctacacagagaaaccctgtctcagaaaaac
caccaccaacaacaaaaacaaaaacaaaaatagcaaaacaaacaacgaat
gaaagaacgaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaga
aaggaaggaagaaaggaaggaaggagaaaataaaggaggaaaattgactt
tgtagactactgtgagaattgaaagagttaatgccaggagatttgtaagt
tgacaaagggctctggagagatgtctcagcatttaagaacatttggtgtt
cttgcagaggatcagggttcaattccaggaccctcatggtcagtctcaac
tgcctgtaactctggttccaggagaacaggtgtcccattctggccttctt
gggtactaggcacatatacatacatgtctacaaaacctcacacagaaaat
aaaaaaaatttaaaatgtttttgcaggagttagcccaagaaaacacatta
ctgtctggtacactgcataccctgatgtgttattaccttgcacactgact
tcaatttctacagctagtcattttaatgaatacatttatcaaaagcacat
gggaagcctgaaacgaagactgacatcagatgcctaaagaacatgggagg
aaaaggtgtgtggggggtgtcattgagggaaatccgatcatcccttcaag
ggtgaaaggctgaaaagaagatggaatgtattgctttaataatattcaat
gaaactatttcattgggaaaaaggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148830935_148831282
seq2: B6Ng01-068L22.b_54_402

seq1  ACAGGCAGTTTTGAGCAGGCAGCAGCGTCTGTGCAACTCTCCTGTTGAAT  50
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  ACAGGCAGTTTTGAGCAGGCAGAAGCGACTGTGCAACTCTCCTGTTGAAT  50

seq1  GGGCTCATGAGTTCATGTAATGTCAAAGTTGAACTTACAGAATGAGAGGT  100
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  GGGCTCATGAGTTCATGAAATGGCAAAGTTGAACTTACAGAATGAGAGGT  100

seq1  TATTAAGCTCCAAAACACCGCAGTAACCCCACTTTTGGATACATATCAAA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATTAAGCTCCAAAACACCGCAGTAACCCCACTTTTGGATACTTATCAAA  150

seq1  TGGAAGGAAATCATCCTGTTGAGGGAACAGCCACACTCCCGTGTGCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAATCATCCTGTTGAGGGAACAGCCACACTCCCGTGTGCAATC  200

seq1  AGCTTGTTTGCCACAGCCAGACCCTCTTGTTGAGTTTTCCTCTGCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTTGCCACAGCCAGACCCTCTTGTTGAGTTTTCCTCTGCTGGGG  250

seq1  TTCAGAGGGCCTGGTGTGGCCGGAGAAGGGTAAAGACACTCTCAAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGGCCTGGTGTGGCCGGAGAAGGGTAAAGACACTCTCAAGAACT  300

seq1  GATAGACACCTGTGCCTGCTGCCA-TCCTCTGCCCCTCTCTTGAGATCT  348
      |||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  GATAGACACCTGTGCCTGCTGCCATTTCTCTGCCCCTCTCTTGAGATCT  349

seq1: chr5_149010494_149011269
seq2: B6Ng01-068L22.g_70_845 (reverse)

seq1  TACCTTTTGCCATGTGAAATAG-TTCATTGTATTTTATTAAAGCAATTAC  49
      |||||||| ||   |||||||| ||||||| || |||||||||||| |||
seq2  TACCTTTTTCCCAATGAAATAGTTTCATTGAATATTATTAAAGCAA-TAC  49

seq1  ATTCCATCTTCTCTTCAGCCTTTCACCCTTGAAGGGATGATCGGATTTCC  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTTCTTTTCAGCCTTTCACCCTTGAAGGGATGATCGGATTTCC  99

seq1  CTCAATGACACCCCCCACACACCTTTTCCTCCCATGTTCTTTAGGCATCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGACACCCCCCACACACCTTTTCCTCCCATGTTCTTTAGGCATCT  149

seq1  GATGTCAGTCTTCGTTTCAGGCTTCCCATGTGCTTTTGATAAATGTATTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGTCTTCGTTTCAGGCTTCCCATGTGCTTTTGATAAATGTATTC  199

seq1  ATTAAAATGACTAGCTGTAGAAATTGAAGTCAGTGTGCAAGGTAATAACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGACTAGCTGTAGAAATTGAAGTCAGTGTGCAAGGTAATAACA  249

seq1  CATCAGGGTATGCAGTGTACCAGACAGTAATGTGTTTTCTTGGGCTAACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGTATGCAGTGTACCAGACAGTAATGTGTTTTCTTGGGCTAACT  299

seq1  CCTGCAAAAACATTTTAAATTTTTTTTATTTTCTGTGTGAGGTTTTGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAAACATTTTAAATTTTTTTTATTTTCTGTGTGAGGTTTTGTAG  349

seq1  ACATGTATGTATATGTGCCTAGTACCCAAGAAGGCCAGAATGGGACACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTATATGTGCCTAGTACCCAAGAAGGCCAGAATGGGACACCT  399

seq1  GTTCTCCTGGAACCAGAGTTACAGGCAGTTGAGACTGACCATGAGGGTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTGGAACCAGAGTTACAGGCAGTTGAGACTGACCATGAGGGTCC  449

seq1  TGGAATTGAACCCTGATCCTCTGCAAGAACACCAAATGTTCTTAAATGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGAACCCTGATCCTCTGCAAGAACACCAAATGTTCTTAAATGCT  499

seq1  GAGACATCTCTCCAGAGCCCTTTGTCAACTTACAAATCTCCTGGCATTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTCTCCAGAGCCCTTTGTCAACTTACAAATCTCCTGGCATTAA  549

seq1  CTCTTTCAATTCTCACAGTAGTCTACAAAGTCAATTTTCCTCCTTTATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAATTCTCACAGTAGTCTACAAAGTCAATTTTCCTCCTTTATTT  599

seq1  TCTCCTTCCTTCCTTTCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCTTCCTTTCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCT  649

seq1  TCCTTCCTTCCTTCCTTTCGTTCTTTCATTCGTTGTTTGTTTTGCTATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTTCGTTCTTTCATTCGTTGTTTGTTTTGCTATTT  699

seq1  TTGTTTTTGTTTTTGTTGTTGGTGGTGGTTTTTCTGAGACAGGGTTTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTGTTGTTGGTGGTGGTTTTTCTGAGACAGGGTTTCTC  749

seq1  TGTGTAGCCTTGGCTGTCCTGGAATTC  776
      |||||||||||||||||||||||||||
seq2  TGTGTAGCCTTGGCTGTCCTGGAATTC  776