BAC Information

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BAC

Clone NameB6Ng01-069J23
Chromosome5 (Build37)
Map Location 88,955,087 - 88,956,145
singlet/doubletsinglet
Overlap geneIgj
Upstream geneSult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam
Downstream geneCrlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069J23.bB6Ng01-069J23.g
ACCDH887875DH887876
length1,0351,155
definitionDH887875|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J23, 5' end.DH887876|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctaggaaatattaatacaggccttgtttctctttcttgttga
atctgtgtattgattgtgattattgttatgaaaaaatatcgatagtttag
gaaagttttggtggagagtattaaatcttacaaaataagatagtcttggg
agaaaagatacttctaatacgatttgagggaaatcttttttttcaggaag
caatggtagttgcggaaggactctgtttgcagttgggtttataaagactg
gctttcaagatttctttgattggggaatagtctaaatttctgctttattt
ttcatttaggtgttttcactgaattttaccatgtgccctcactaaaataa
ttagaagcattagatataaatcagaattccttcaggctagctgctcttga
atttttccaacgaagaaaaagaaaatttctcttaaaaattctttgctctt
ttcgattagaaaagaaaacaaatagaaagactaggacttatgaacaataa
aaattaaagtttttgatccaggcatggtggtgcacacttgtaacctcagc
actcaggagatggaagtagggggtggagaatttagaatcaaccatagctg
catagtgagtttcaggctatcctggactacatgagactctgtctgctatc
ttcaggtaagaaaggcaaattatctcatcttagcacataatgcacttaaa
aaaaaaaaaaagacagacaatacctctttatgtaatgcagggtgtcatgg
aagttcccaggtagttcaggcaggccttgaatttccatcctccctcctca
atttcccaagcgctgggatagcaggcctgcacagtgacaccaaagacaca
tagagttctgtttttctttttcatgatatagttacctttcaaacccaagt
gacgacgagcgacatctgctgacacaatgcatgtgtacccggttacctct
aagatcatccttccacggagattctatgaggacatttgggaagaaattcg
attggttaggacttacctgcttttctttcctgtta
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aggatggaccatgtagagactgccatagccagggatccaccccataatca
gcatccaaacgctgacacattgcatacactagcaagattttattgaaagg
acgcagatgtagctgtctcttgtgagactatgccggggcccagcaaacac
agaagtggatgctcacagtcagctaatgatcgatcatagggctccaatgg
aggagctagagaaagtagcagagctaagggatctgcatccttatagttga
cacattattgagctatcagtatccggagttctgactctagctgcattata
tcaagatggcttagtcgcatcctggagagaagtccatggacttgcactta
tgtccagtaaggaataccaggcaaaagggagagtgtgtggcagagcatgt
gggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88955087_88956145
seq2: B6Ng01-069J23.b_49_1083 (reverse)

seq1  TAACAGAGAAAAGAAAAGCAAGGTGAATGTCACATACACAATTCGGATAT  50
      ||||  || |||||||||| |||| | |    | || || | |||   ||
seq2  TAAC--AGGAAAGAAAAGC-AGGTAAGT----CCTA-ACCAATCG--AAT  40

seq1  TTCTCTCCACAATGTCCTCATTAGGATCCTCGGTGGAAGGGATGATCCTA  100
      |||| |||  |||||||||| ||| || ||| |||||| |||||||| ||
seq2  TTCT-TCCCAAATGTCCTCA-TAGAAT-CTCCGTGGAA-GGATGATCTTA  86

seq1  GAGGTAACTCGGGTACACATGCATTTGTTGTCAGCAAGAATGGTCGCTTC  150
      |||||||| ||||||||||||||||   ||||||| |||   ||||| ||
seq2  GAGGTAAC-CGGGTACACATGCATT--GTGTCAGC-AGA--TGTCGC-TC  129

seq1  GTCGTCACCTTGGGTTTGAAAGGTAAACTATATCATGAAAAAGGAAAACA  200
      ||||||| |||||||||||||||| |||||||||||||||||| ||||||
seq2  GTCGTCA-CTTGGGTTTGAAAGGT-AACTATATCATGAAAAAGAAAAACA  177

seq1  GAACTCTATGTTGTCTTTGGTGTCACTGTGCAGGCCTGCTATCCCAGCGC  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTATG-TGTCTTTGGTGTCACTGTGCAGGCCTGCTATCCCAGCGC  226

seq1  TTGGGAAATTGAGGAGGGAGGATGGGAAATTCAAGGCCTGCCTGGACTAC  300
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TTGGGAAATTGAGGAGGGAGGAT-GGAAATTCAAGGCCTGCCTGAACTAC  275

seq1  CTGGGAACTTCCATGACACCCTGCATTACATAAAGAGGTATTGTCTGTC-  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGGAACTTCCATGACACCCTGCATTACATAAAGAGGTATTGTCTGTCT  325

seq1  TTTTTTTTTTTTTAAGTGCATTATGTGCTAAGATGAGATAATTTGCCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAAGTGCATTATGTGCTAAGATGAGATAATTTGCCTTT  375

seq1  CTTACCTGAAGATAGCAGACAGAGTCTCATGTAGTCCAGGATAGCCTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGAAGATAGCAGACAGAGTCTCATGTAGTCCAGGATAGCCTGAA  425

seq1  ACTCACTATGCAGCTATGGTTGATTCTAAATTCTCCACCCCCTACTTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATGCAGCTATGGTTGATTCTAAATTCTCCACCCCCTACTTCCA  475

seq1  TCTCCTGAGTGCTGAGGTTACAAGTGTGCACCACCATGCCTGGATCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGTGCTGAGGTTACAAGTGTGCACCACCATGCCTGGATCAAAA  525

seq1  ACTTTAATTTTTATTGTTCATAAGTCCTAGTCTTTCTATTTGTTTTCTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATTTTTATTGTTCATAAGTCCTAGTCTTTCTATTTGTTTTCTTT  575

seq1  TCTAATCGAAAAGAGCAAAGAATTTTTAAGAGAAATTTTCTTTTTCTTCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCGAAAAGAGCAAAGAATTTTTAAGAGAAATTTTCTTTTTCTTCG  625

seq1  TTGGAAAAATTCAAGAGCAGCTAGCCTGAAGGAATTCTGATTTATATCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAATTCAAGAGCAGCTAGCCTGAAGGAATTCTGATTTATATCTA  675

seq1  ATGCTTCTAATTATTTTAGTGAGGGCACATGGTAAAATTCAGTGAAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTAATTATTTTAGTGAGGGCACATGGTAAAATTCAGTGAAAACA  725

seq1  CCTAAATGAAAAATAAAGCAGAAATTTAGACTATTCCCCAATCAAAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGAAAAATAAAGCAGAAATTTAGACTATTCCCCAATCAAAGAAA  775

seq1  TCTTGAAAGCCAGTCTTTATAAACCCAACTGCAAACAGAGTCCTTCCGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAGCCAGTCTTTATAAACCCAACTGCAAACAGAGTCCTTCCGCA  825

seq1  ACTACCATTGCTTCCTGAAAAAAAAGATTTCCCTCAAATCGTATTAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCATTGCTTCCTGAAAAAAAAGATTTCCCTCAAATCGTATTAGAAG  875

seq1  TATCTTTTCTCCCAAGACTATCTTATTTTGTAAGATTTAATACTCTCCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCTCCCAAGACTATCTTATTTTGTAAGATTTAATACTCTCCAC  925

seq1  CAAAACTTTCCTAAACTATCGATATTTTTTCATAACAATAATCACAATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTCCTAAACTATCGATATTTTTTCATAACAATAATCACAATCA  975

seq1  ATACACAGATTCAACAAGAAAGAGAAACAAGGCCTGTATTAATATTTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGATTCAACAAGAAAGAGAAACAAGGCCTGTATTAATATTTCCT  1025

seq1  AGAAGAATTC  1059
      ||||||||||
seq2  AGAAGAATTC  1035