BAC Information

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BAC

Clone NameB6Ng01-069M11
Chromosome5 (Build37)
Map Location 48,422,107 - 48,562,364
singlet/doubletdoublet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069M11.bB6Ng01-069M11.g
ACCDH887979DH887980
length1,0721,101
definitionDH887979|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M11, 5' end.DH887980|Mus musculus domesticus DNA, BAC clone: B6Ng01-069M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,422,107 - 48,423,187)(48,561,256 - 48,562,364)
sequence
gaattcttggttgcacagtagaatcttgttaattaaaaagagattcttaa
tcttaataatctattacatttcaaccttaacattttgaataagagagttt
tgaggctatgtcaaagtattaataaaatgtgcaagatacggctatgatgg
agcatgatgttaagttgctatgtgcttagtgtttggggggttagttatta
ttttcaattaatttactcttctctgagtcaagctacagtttgtgaaggag
caggttttgcttggtagacatcattggaatggtggcagagcttctgctgt
gctgatgaggttgcatttgtgtggtcggtagtaaggtctttgtccaaatg
atttgagagctactctctggtttctggataactgcaaacacatgtttatc
tcaatgacggcctatgctcgctccactcttctagatgcgtaactgagtcg
ggcttttttgctctttgattagctctcttgcacacatcagttcttttcag
agccactgagtaaacaggtcaaggaaaacctacccagcgttagagtcata
gcacaggtctgtcctaactagtacaaatcacttctcagccagagtgtgca
ttttacaagagaaatcttttttggaatatatatcgacaggatagaaaagg
acttcttcatcttaccaggacgtggtctccagctttgctttatggacaca
gcactactgtgcgttcctgcccactgcgttcataacaggtttttaagaac
gagataagagtatgtgagattacacacctcattggaatattttgtgtttc
actaaggaggaaactcagatcctcttcttcacagcacatatttttatgat
tcttttcatatagaaaatatcacaatgcatcatatcgataccctagtagc
tggggatcctagtttatactatagatatccccctttgaagtgatcttatt
ttctttttattggaagtattttcatacaatatatcctgacattagtttct
tcctcatctcctcacagtctctcacttccttgtcatccaggccatgttct
ttctctcacttcctctctttga
gaattctcccatggagaactctgaatatcagttaattcttgaaaaattgc
ctgcactgtttatgactagctaaaaaacattgaattatacgagttactct
tgatacacaggggcccttcatccatatatcctaagatactgtaatagcta
aggaaaacattttaacccccaacatttgaaataaattgaaaagtcatttt
aaaagactaacagggtattttggaattgataaagatatatattgagaata
ttaggtttgccgctgagagcttgtattgcccaggcagtttgagagcaaaa
ggcacttaaacaccttgcaagaaagcagattaaagatttatcaagaaaag
taaagaaatacgggttttctcctcttccttattataaggggtgctaattc
atcttgtccttcacagatgcaaggcaaaggatgcgagaaaaagacacatg
aatgaaaaggggaatttatcatttttaaaaaatacttttaacatctaaaa
actccagaaaaaaaagtgcagttctgagctatctttatctttagttggaa
aatactatgtatgctttacaaaagaaaataaacagtttatttgctgtgct
ttcagcataccctgccagaaactacaaagagaataagaaaggacttggaa
aaaaccctccatttttctgaaaaatttaaaaacattaatcgccacattga
agaataaattgtataatgacttgagttgcccaaatgccttacaaaggcaa
acttttatgttttccgttgaagtatcttcaaaacaagaagaaagctttta
tcagtattttcattttctgatagttttaaaatgtaaacatgaccccaaaa
catatgataatttataaagcactaaaaattaaggtatactttctatactt
acaggttttttaatgtcaactgccccacggaaagccttccttggaattgc
ttgaatttgattttcactgagatcactagaaacaaatgaaagagaataga
gttaggaatttatattttatgtttcattaaccaaaatacggatagaaaat
taaaattagaccagaaaagtactctgtacccacaaaaagcaaatagtaac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48422107_48423187
seq2: B6Ng01-069M11.b_47_1114

seq1  GAATTCTTGGTTGCACAGTAGAATCTTGTTAATTAAAAAGAGATTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTGCACAGTAGAATCTTGTTAATTAAAAAGAGATTCTTAA  50

seq1  TCTTAATAATCTATTACATTTCAACCTTAACATTTTGAATAAGAGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAATCTATTACATTTCAACCTTAACATTTTGAATAAGAGAGTTT  100

seq1  TGAGGCTATGTCAAAGTATTAATAAAATGTGCAAGATACGGCTATGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTATGTCAAAGTATTAATAAAATGTGCAAGATACGGCTATGATGG  150

seq1  AGCATGATGTTAAGTTGCTATGTGCTTAGTGTTTGGGGGGTTAGTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATGTTAAGTTGCTATGTGCTTAGTGTTTGGGGGGTTAGTTATTA  200

seq1  TTTTCAATTAATTTACTCTTCTCTGAGTCAAGCTACAGTTTGTGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTAATTTACTCTTCTCTGAGTCAAGCTACAGTTTGTGAAGGAG  250

seq1  CAGGTTTTGCTTGGTAGACATCATTGGAATGGTGGCAGAGCTTCTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTGCTTGGTAGACATCATTGGAATGGTGGCAGAGCTTCTGCTGT  300

seq1  GCTGATGAGGTTGCATTTGTGTGGTCGGTAGTAAGGTCTTTGTCCAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAGGTTGCATTTGTGTGGTCGGTAGTAAGGTCTTTGTCCAAATG  350

seq1  ATTTGAGAGCTACTCTCTGGTTTCTGGATAACTGCAAACACATGTTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAGCTACTCTCTGGTTTCTGGATAACTGCAAACACATGTTTATC  400

seq1  TCAATGACGGCCTATGCTCGCTCCACTCTTCTAGATGCGTAACTGAGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACGGCCTATGCTCGCTCCACTCTTCTAGATGCGTAACTGAGTCG  450

seq1  GGCTTTTTTGCTCTTTGATTAGCTCTCTTGCACACATCAGTTCTTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTGCTCTTTGATTAGCTCTCTTGCACACATCAGTTCTTTTCAG  500

seq1  AGCCACTGAGTAAACAGGTCAAGGAAAACCTACCCAGCGTTAGAGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGAGTAAACAGGTCAAGGAAAACCTACCCAGCGTTAGAGTCATA  550

seq1  GCACAGGTCTGTCCTAACTAGTACAAATCACTTCTCAGCCAGAGTGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTCTGTCCTAACTAGTACAAATCACTTCTCAGCCAGAGTGTGCA  600

seq1  TTTTACAAGAGAAATCTTTTTTGGAATATATATCGACAGGATAGAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAGAGAAATCTTTTTTGGAATATATATCGACAGGATAGAAAAGG  650

seq1  ACTTCTTCATCTTACCAGGACGTGGTCTCCAGCTTTGCTTTATGGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCATCTTACCAGGACGTGGTCTCCAGCTTTGCTTTATGGACACA  700

seq1  GCACTACTGTGCGTTCCTGCCCACTGCGTTCATAACAGGTTTTTAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTGTGCGTTCCTGCCCACTGCGTTCATAACAGGTTTTTAAGAAC  750

seq1  GAGATAAGAGTATGTGAGATTACACACCTCATTGGAATATTTTGTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGAGTATGTGAGATTACACACCTCATTGGAATATTTTGTGTTTC  800

seq1  ACTAAGGAGGAAACTCAGATCCTCTTCTTCACAGCACATATTTTTATGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTAAGGAGGAAACTCAGATCCTCTTCTTCACAGCACATATTTTTATG-A  849

seq1  TTCTTTTCATATAGAAAATATCACAATGCATCATATCGATACCCTAGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCATATAGAAAATATCACAATGCATCATATCGATACCCTAGTAG  899

seq1  CTGGGGAATCCTAGTTTATACTATAGATATCCCCCCTTTGAAGTGATCTT  950
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGGGG-ATCCTAGTTTATACTATAGATAT-CCCCCTTTGAAGTGATCTT  947

seq1  ATTTTCTTTTTTATTGAAAGTAATTTTTCATACAATATATCCTGACCATA  1000
      |||||| ||||||||| |||||  ||||||||||||||||||||||  ||
seq2  ATTTTC-TTTTTATTGGAAGTA--TTTTCATACAATATATCCTGACATTA  994

seq1  GTTTCTCCTCCCTCATCTCCTCACAGATCTCTCCACTTCCCTGTCCATCC  1050
      ||||   || |||||||||||||||| ||||| ||||||| ||| |||||
seq2  GTTT---CTTCCTCATCTCCTCACAG-TCTCT-CACTTCCTTGT-CATCC  1038

seq1  AAGCCCATGTCTTCTTTCTCTCACT--CTCTCT  1081
       || |||||  ||||||||||||||  ||||||
seq2  -AGGCCATG--TTCTTTCTCTCACTTCCTCTCT  1068

seq1: chr5_48561256_48562364
seq2: B6Ng01-069M11.g_69_1169 (reverse)

seq1  AGTTAACTATTTTGCCTTTTTTGTGTGGTACAGGGTACTTTTTCTTGGTC  50
      |||| |||| |||||  |||||||| ||||||| ||||||||   |||||
seq2  AGTT-ACTA-TTTGC--TTTTTGTG-GGTACAGAGTACTTTT--CTGGTC  43

seq1  TAATTTTTGGTTTTCTATTCCGTATTTTGGTTAAATGAAACATAAAATAT  100
      ||| ||||  ||||||| |||||||||||||| |||||||||||||||||
seq2  TAA-TTTTAATTTTCTA-TCCGTATTTTGGTT-AATGAAACATAAAATAT  90

seq1  AATTTCTTAACTCTATTTCTCCTTCATTTTGTTTCTAGTGATCTCAGTGA  150
      || ||| |||||||| ||||| |||| |||||||||||||||||||||||
seq2  AAATTCCTAACTCTA-TTCTCTTTCA-TTTGTTTCTAGTGATCTCAGTGA  138

seq1  AAATCAAATTCAAGCAATTCCAAGGAAGGCTTTCCGTGGGGCAGTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATTCAAGCAATTCCAAGGAAGGCTTTCCGTGGGGCAGTTGACA  188

seq1  TT-AAAAACCTGTAAGTATAG-AAGTATACCTTAATTTTTAGTGCTTTAT  248
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAAAAAACCTGTAAGTATAGAAAGTATACCTTAATTTTTAGTGCTTTAT  238

seq1  AAATTATCATATGTTTTGGGGTCATGTTTACATTTTTAAAACTATCAGAA  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAATTATCATATGTTTTGGGGTCATGTTTACA-TTTTAAAACTATCAGAA  287

seq1  AATG-AAATACTGAT-AAAGCTTTCTTCTTGTTTTGAAGATACTTCAACG  346
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATGAAAATACTGATAAAAGCTTTCTTCTTGTTTTGAAGATACTTCAACG  337

seq1  G-AAACATAAAAGTTTGCCTTTGTAAGGCATTTGGGCAACTCAAGTCATT  395
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATAAAAGTTTGCCTTTGTAAGGCATTTGGGCAACTCAAGTCATT  387

seq1  ATACAATTTATTCTTCAATGTGGCGATTAATGTTTTTAAATTTTTCAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTATTCTTCAATGTGGCGATTAATGTTTTTAAATTTTTCAGAA  437

seq1  AAATGGAGGGTTTTTTCCAAGTCCTTTCTTATTCTCTTTGTAGTTTCTGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGGGTTTTTTCCAAGTCCTTTCTTATTCTCTTTGTAGTTTCTGG  487

seq1  CAGGGTATGCTGAAAGCACAGCAAATAAACTGTTTATTTTCTTTTGTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATGCTGAAAGCACAGCAAATAAACTGTTTATTTTCTTTTGTAAA  537

seq1  GCATACATAGTATTTTCCAACTAAAGATAAAGATAGCTCAGAACTGCACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATAGTATTTTCCAACTAAAGATAAAGATAGCTCAGAACTGCACT  587

seq1  TTTTTTTCTGGAGTTTTTAGATGTTAAAAGTATTTTTTAAAAATGATAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGGAGTTTTTAGATGTTAAAAGTATTTTTTAAAAATGATAAA  637

seq1  TTCCCCTTTTCATTCATGTGTCTTTTTCTCGCATCCTTTGCCTTGCATCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTTCATTCATGTGTCTTTTTCTCGCATCCTTTGCCTTGCATCT  687

seq1  GTGAAGGACAAGATGAATTAGCACCCCTTATAATAAGGAAGAGGAGAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGACAAGATGAATTAGCACCCCTTATAATAAGGAAGAGGAGAAAA  737

seq1  CCCGTATTTCTTTACTTTTCTTGATAAATCTTTAATCTGCTTTCTTGCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTATTTCTTTACTTTTCTTGATAAATCTTTAATCTGCTTTCTTGCAA  787

seq1  GGTGTTTAAGTGCCTTTTGCTCTCAAACTGCCTGGGCAATACAAGCTCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTAAGTGCCTTTTGCTCTCAAACTGCCTGGGCAATACAAGCTCTC  837

seq1  AGCGGCAAACCTAATATTCTCAATATATATCTTTATCAATTCCAAAATAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCAAACCTAATATTCTCAATATATATCTTTATCAATTCCAAAATAC  887

seq1  CCTGTTAGTCTTTTAAAATGACTTTTCAATTTATTTCAAATGTTGGGGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGTCTTTTAAAATGACTTTTCAATTTATTTCAAATGTTGGGGGT  937

seq1  TAAAATGTTTTCCTTAGCTATTACAGTATCTTAGGATATATGGATGAAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTTCCTTAGCTATTACAGTATCTTAGGATATATGGATGAAGG  987

seq1  GCCCCTGTGTATCAAGAGTAACTCGTATAATTCAATGTTTTTTAGCTAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGTATCAAGAGTAACTCGTATAATTCAATGTTTTTTAGCTAGT  1037

seq1  CATAAACAGTGCAGGCAATTTTTCAAGAATTAACTGATATTCAGAGTTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAGTGCAGGCAATTTTTCAAGAATTAACTGATATTCAGAGTTCT  1087

seq1  CCATGGGAGAATTC  1109
      ||||||||||||||
seq2  CCATGGGAGAATTC  1101