BAC Information

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BAC

Clone NameB6Ng01-070C16
Chromosome19 (Build37)5 (Build37)
Map Location 39,823,020 - 39,824,17618,084,519 - 18,084,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePlce1, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik
Downstream geneCyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070C16.bB6Ng01-070C16.g
ACCDH888251DH888252
length1,152998
definitionDH888251|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C16, 5' end.DH888252|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,823,020 - 39,824,176)(18,084,519 - 18,084,577)
sequence
gaattcttcccctggaatctgttctcactgcaggagggctgtatgctcag
attaagaaatatttacatttgagttaatgcagaactcagagcagccttgg
ccagccttgtgtggcattttcttttgttttgcaacccatgcccaaggaag
ttcttgaaacctagcctctccctgccatcaggggaatttctttttagcta
aaagactttgttttggatctacccaggtgttgttcatagtaaattttaaa
gtttaattttaagacttataaaaggtcaatcaggttatagaaattataaa
ggcactacaagctagcttgccttcttcatataaaattattatagttttga
tttgtaagattgttttttcctttgcatgctgttaattgtaaaggctttgt
tactagtgaattggtgaccattaaaaagttttgcccattctgcgaggttt
ttttttttgtttgtttgtttttgtttaaactcgcagaatgggctgcccag
tgtcattgcctctcctttgggtgcaggacagccccagcactctggaacaa
taaattcctcttgcttttgcatcaatcccctgctacatgtggctcattca
gggggaccctggtagttaaggctcctcagagtcttacaaagtgtttctta
aaaaaaaaaaaagtactgcccctcaatatggctaatagtcttacatcata
taagaaatttttattatctcggcttcaatagaagaagctaagactttgaa
tctttcagtgaattgtttcttaaatgaaaagtaatttattagcaaatgcc
tctaaagaaacatttacttcaaatatttgctgtcacataatgaactttaa
agacctggggagtagctgttgctccataaaagagattcagaggcaatgtc
tttttaatatttagggccttagttacactagaaaaagtgtggtacagaaa
atttaagaaagaaaatatattgcttacttcaagttatttttgaaagcttc
taggatatgttaattggctaagacctcaccttaaactaccacagatactt
aacctttgttagtgctatcagtgagaattcaattaactggtggagaaaca
aaaagctttaaataaagtagaggaaatgtctgtaatcaatgttatcaatt
at
gaattctcacctgaggaatactgaatggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgtaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaaaataaaaaattcaggtgacagg
agatgctggtgaggatttggagaaagaggaacactcctccattgttggtg
ggattgcaagctggtacaaccactctggaaattagtctggcagttcctca
gaaaactggacatagcactaccggcagatccggcaatgcttctcctgggc
atctacccagaagaagttccaactggtaataaggacacatgctccactat
gttcatagcatccttatttataatatccgaaaggtggaaagtacccagag
ttcccttaacagaggaatcgatacagaaaatgttgtacatttacaaaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgactgaggttacccaatcactaa
agaactcacatgatatgtactcactgataagtggatattagcccagaatc
ttagaatacccaagatacaagatgcaatttgcaaaacacattaaactcaa
gaagaaggaagatcaaagtgtgggtactttgccccttcttagaattggga
acaaaacacccatggaaggagttgcagagacaaagtttggagctgagaca
aaaggatggaccatctagagactgccatacaggggatccatcccataatc
agcctcaatacactgacaccattgcatacaccagcaagattttgttgaaa
agaccctggtatagctgtgtcttgtgaggctatgccagggcctggcaaac
acagaagtggaagctcacagtcagctaatggatggaacacagggtcccca
atggaggagctagagaaagtacccaaggagctaaaggggtctgcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39823020_39824176
seq2: B6Ng01-070C16.b_44_1195

seq1  GAATTCTTCCCCTGGAATCTGTTCTCACTGCAGGAGGGCTGTATGCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCTGGAATCTGTTCTCACTGCAGGAGGGCTGTATGCTCAG  50

seq1  ATTAAGAAATATTTACATTTGAGTTAATGCAGAACTCAGAGCAGCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAATATTTACATTTGAGTTAATGCAGAACTCAGAGCAGCCTTGG  100

seq1  CCAGCCTTGTGTGGCATTTTCTTTTGTTTTGCAACCCATGCCCAAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGTGTGGCATTTTCTTTTGTTTTGCAACCCATGCCCAAGGAAG  150

seq1  TTCTTGAAACCTAGCCTCTCCCTGCCATCAGGGGAATTTCTTTTTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAACCTAGCCTCTCCCTGCCATCAGGGGAATTTCTTTTTAGCTA  200

seq1  AAAGACTTTGTTTTGGATCTACCCAGGTGTTGTTCATAGTAAATTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTTGTTTTGGATCTACCCAGGTGTTGTTCATAGTAAATTTTAAA  250

seq1  GTTTAATTTTAAGACTTATAAAAGGTCAATCAGGTTATAGAAATTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTTAAGACTTATAAAAGGTCAATCAGGTTATAGAAATTATAAA  300

seq1  GGCACTACAAGCTAGCTTGCCTTCTTCATATAAAATTATTATAGTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTACAAGCTAGCTTGCCTTCTTCATATAAAATTATTATAGTTTTGA  350

seq1  TTTGTAAGATTGTTTTTTCCTTTGCATGCTGTTAATTGTAAAGGCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGATTGTTTTTTCCTTTGCATGCTGTTAATTGTAAAGGCTTTGT  400

seq1  TACTAGTGAATTGGTGACCATTAAAAAGTTTTGCCCATTCTGCGAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTGAATTGGTGACCATTAAAAAGTTTTGCCCATTCTGCGAGGTTT  450

seq1  TTTTTTTTGTTTGTTTGTTTTTGTTTAAACTCGCAGAATGGGCTGCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTTGTTTGTTTTTGTTTAAACTCGCAGAATGGGCTGCCCAG  500

seq1  TGTCATTGCCTCTCCTTTGGGTGCAGGACAGCCCCAGCACTCTGGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGCCTCTCCTTTGGGTGCAGGACAGCCCCAGCACTCTGGAACAA  550

seq1  TAAATTCCTCTTGCTTTTGCATCAATCCCCTGCTACATGTGGCTCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTCTTGCTTTTGCATCAATCCCCTGCTACATGTGGCTCATTCA  600

seq1  GGGGGACCCTGGTAGTTAAGGCTCCTCAGAGTCTTACAAAGTGTTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACCCTGGTAGTTAAGGCTCCTCAGAGTCTTACAAAGTGTTTCTTA  650

seq1  AAAAAAAAAAAAGTACTGCCCCTCAATATGGCTAATAGTCTTACATCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGTACTGCCCCTCAATATGGCTAATAGTCTTACATCATA  700

seq1  TAAGAAATTTTTATTATCTCGGCTTCAATAGAAGAAGCTAAGACTTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATTTTTATTATCTCGGCTTCAATAGAAGAAGCTAAGACTTTGAA  750

seq1  TCTTTCAGTGAATTGTTTCTTAAATGAAAAGTAATTTATTAGCAAATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGTGAATTGTTTCTTAAATGAAAAGTAATTTATTAGCAAATGCC  800

seq1  TCTAAAGAAACATTTACTTCAAATATTTGCTGTCACATAATGAACTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGAAACATTTACTTCAAATATTTGCTGTCACATAATGAACTTTAA  850

seq1  AGACCTGGGGAGTAGCTGTTGCTCCATAAAAGAGATTCAGAGGCAATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGGGAGTAGCTGTTGCTCCATAAAAGAGATTCAGAGGCAATGTC  900

seq1  TTTTTAATATTTAGGGCCTTAGTTACACTAGAAAAAGTGTGGTACAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATATTTAGGGCCTTAGTTACACTAGAAAAAGTGTGGTACAGAAA  950

seq1  ATTTAAGAAAGAAAATATATTGCTTACTTCAAGTTATTTTTGAAAGCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAAAGAAAATATATTGCTTACTTCAAGTTATTTTTGAAAGCTTC  1000

seq1  TAGGATATGTTAATTGGCTAAGACCTCACCTTAAACTACCACAGGATAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TAGGATATGTTAATTGGCTAAGACCTCACCTTAAACTACCACA-GAT-AC  1048

seq1  TTAACCTTTGTTAGGTGCTATCAAGTGAGATTCAAATTAACTGGT-GAGA  1099
      ||||||||||||| |||||||| ||||||| |  ||||||||||| ||||
seq2  TTAACCTTTGTTA-GTGCTATC-AGTGAGAATTCAATTAACTGGTGGAGA  1096

seq1  AACAAAAAGGCTTTACATAAAGTAGAGGAAATGTCTGTAATCAATTGTTA  1149
      |||||||| |||||| |||||||||||||||||||||||||||| |||||
seq2  AACAAAAA-GCTTTAAATAAAGTAGAGGAAATGTCTGTAATCAA-TGTTA  1144

seq1  TCAATTAT  1157
      ||||||||
seq2  TCAATTAT  1152

seq1: chr5_18084519_18084577
seq2: B6Ng01-070C16.g_380_438 (reverse)

seq1  TATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTAC  50
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TATTATAAATAAGGATGCTATGAACATAGTGGAGCATGTGTCCTTATTAC  50

seq1  CAGTTGGAA  59
      |||||||||
seq2  CAGTTGGAA  59