BAC Information

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BAC

Clone NameB6Ng01-070D09
Chromosome5 (Build37)
Map Location 75,863,271 - 76,075,262
singlet/doubletdoublet
Overlap geneLOC100039169, Kit
Upstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158
Downstream geneEG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070D09.bB6Ng01-070D09.g
ACCDH888281DH888282
length5111,024
definitionDH888281|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D09, 5' end.DH888282|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,074,746 - 76,075,262)(75,863,271 - 75,864,322)
sequence
tggaattttggtttcttttaaaacaaaaacaaaaacagaaatatcctaag
aatgtgctttcattttaatttcaggtacaaggctgtagggctgcttcaga
ctgactatgatttgcatcatgatttagccgagggatgcttctaccagctg
cagatagcttctgtgattgtgtgacattgggaattctaggaacttttcag
agggttcatgaatgtgaggacccacagaggagggggttggtgactgttgg
ttgttcgggggctgggggttggttgtgatttgtttgtcgctgtggtcaaa
gaagaaatcaaaagaaaggaattagattcagggcttttcctaattcctct
ctcccctctctccttgtttctttcctatctagtgttaggggtgaaactgg
ggagataaaaggtgaggaaaggtacaattcacgaagtggctaagagcagc
tacacagctacccaagtgtctatcgtgtggaaacgcatattaaaacccac
tgtgcccgggt
gaattcctaccctcctgggagaggtgagtatggaggcccaggaagctgtt
gaacagagacaccagagcctcagagcagagataactacaagttcaagagt
gagcagccttcaggcatgctgtacgtggtagaagggagcagcacacctga
aattagccccgtgcctcaacataggagctgatagctagggtgaaaacaat
actgttttgaagctaaaaaaaaaaaaaaaaaaaatctgtgtatttggtat
gaaacagttggagatgtttgggtgagaaagtcaaggtgattgagactatg
tgtgacagaagcagagttattgtaaattaacaggtatataataacaaagg
gaaagtctaaaaacaggtgggccaagctacatatgaaacacaatcacatc
tttcttctgcattagtgttttcaagagaatgttctagaagaatgtattag
cagtggttagattcaaattactttcgttttcttaatcatgcattcattaa
gcacattttctttttctttttcttttcttttttttttttggctttgtgta
tgcttttctttggtaatcgggttaaaattctctaagacccacgagaagag
aatttttgtgtcacctagaaagcatgaaaactagaaaataaagcgattaa
aatttgctccaattgccttctttctgtgaaaagaacaccaggagtgttgg
ctttgatgtgaggaatttggagttgctccagaagacctttacgcagtccc
tctgcacagggacacgtggctccgatactctacttggtaaccatatggtc
ctgcatctgcaaagccacaaacaggaggagatcttgctgcttttctcctc
tctgcttttaagcacaggcagagctgattgactgcctggccttttactgt
taagctggatagagaaaacaccccaccccgagagatgtcatcacacagct
cagcgtctcacagctatcgacaaacacatagctgtctcatgtcataactt
actaaagctcagctcactggattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_76074746_76075262
seq2: B6Ng01-070D09.b_45_561 (reverse)

seq1  ACCCGGGCACAGTGGGTTTTAATATGTGTTTCCACACGATTGACACTTGG  50
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  ACCCGGGCACAGTGGGTTTTAATATGCGTTTCCACACGATAGACACTTGG  50

seq1  GTAGCTGTGTAGCTGCTCTTAGCCACTTCGTGAGTTCTACCTTTCCTCAC  100
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  GTAGCTGTGTAGCTGCTCTTAGCCACTTCGTGAATTGTACCTTTCCTCAC  100

seq1  CTTTTATCTCCCCAGTTTCACCCCTAACACTAGATAGGAAAGAAACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTCCCCAGTTTCACCCCTAACACTAGATAGGAAAGAAACAAGG  150

seq1  AGAGAGGGGAGAGAGGAATTAGGAAAAGCCCTGAATCTAATTCCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGGAGAGAGGAATTAGGAAAAGCCCTGAATCTAATTCCTTTCTT  200

seq1  TTGATTTCTTCTTTGACCACAGCGACAAACAAATCACAACCAACCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTTCTTTGACCACAGCGACAAACAAATCACAACCAACCCCCAG  250

seq1  CCCCCGAACAACCAACAGTCACCAACCCCCTCCTCTGTGGGTCCTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGAACAACCAACAGTCACCAACCCCCTCCTCTGTGGGTCCTCACAT  300

seq1  TCATGAACCCTCTGAAAAGTTCCTAGAATTCCCAATGTCACACAATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACCCTCTGAAAAGTTCCTAGAATTCCCAATGTCACACAATCACA  350

seq1  GAAGCTATCTGCAGCTGGTAGAAGCATCCCTCGGCTAAATCATGATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATCTGCAGCTGGTAGAAGCATCCCTCGGCTAAATCATGATGCAA  400

seq1  ATCATAGTCAGTCTGAAGCAGCCCTACAGCCTTGTACCTGAAATTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTCAGTCTGAAGCAGCCCTACAGCCTTGTACCTGAAATTAAAAT  450

seq1  GAAAGCACATTCTTAGGATATTTCTGTTTTTGTTTTTGTTTTAAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACATTCTTAGGATATTTCTGTTTTTGTTTTTGTTTTAAAAGAAA  500

seq1  CCAAAATTCCAGAATTC  517
      |||||||||||||||||
seq2  CCAAAATTCCAGAATTC  517

seq1: chr5_75863271_75864322
seq2: B6Ng01-070D09.g_67_1090

seq1  GAATTCCTACCCTCCTGGGAGAGGTGAGTATGGAGGCCCAGGAAGCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCCTCCTGGGAGAGGTGAGTATGGAGGCCCAGGAAGCTGTT  50

seq1  GAACAGAGACACCAGAGCCTCAGAGCAGAGATAACTACAAGTTCAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGACACCAGAGCCTCAGAGCAGAGATAACTACAAGTTCAAGAGT  100

seq1  GAGCAGCCTTCAGGCATGCTGTACGTGGTAGAAGGGAGCAGCACACCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTTCAGGCATGCTGTACGTGGTAGAAGGGAGCAGCACACCTGA  150

seq1  AATTAGCCCCGTGCCTCAACATAGGAGCTGATAGCTAGGGTGAAAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCCCGTGCCTCAACATAGGAGCTGATAGCTAGGGTGAAAACAAT  200

seq1  ACTGTTTTGAAGCTAAAAAAAAAAAAAAAAAAAATCTGTGTATTTGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTGAAGCTAAAAAAAAAAAAAAAAAAAATCTGTGTATTTGGTAT  250

seq1  GAAACAGTTGGAGATGTTTGGGTGAGAAAGTCAAGGTGATTGAGACTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTTGGAGATGTTTGGGTGAGAAAGTCAAGGTGATTGAGACTATG  300

seq1  TGTGACAGAAGCAGAGTTATTGTAAATTAACAGGTATATAATAACAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGAAGCAGAGTTATTGTAAATTAACAGGTATATAATAACAAAGG  350

seq1  GAAAGTCTAAAAACAGGTGGGCCAAGCTACATATGAAACACAATCACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTAAAAACAGGTGGGCCAAGCTACATATGAAACACAATCACATC  400

seq1  TTTCTTCTGCATTAGTGTTTTCAAGAGAATGTTCTAGAAGAATGTATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGCATTAGTGTTTTCAAGAGAATGTTCTAGAAGAATGTATTAG  450

seq1  CAGTGGTTAGATTCAAATTACTTTCGTTTTCTTAATCATGCATTCATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAGATTCAAATTACTTTCGTTTTCTTAATCATGCATTCATTAA  500

seq1  GCACATTTTCTTTTTCTTTTTCTTTTCTTTTTTTTTTTTGGCTTTGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTCTTTTTCTTTTTCTTTTCTTTTTTTTTTTTGGCTTTGTGTA  550

seq1  TGCTTTTCTTTGGTAATCGGGTTAAAATTCTCTAAGACCCACGAGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTTTGGTAATCGGGTTAAAATTCTCTAAGACCCACGAGAAGAG  600

seq1  AATTTTTGTGTCACCTAGAAAGCATGAAAACTAGAAAATAAAGCGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTGTCACCTAGAAAGCATGAAAACTAGAAAATAAAGCGATTAA  650

seq1  AATTTGCTCCAATTGCCTTCTTTCTGTGAAAAGAACACCAGGAGTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTCCAATTGCCTTCTTTCTGTGAAAAGAACACCAGGAGTGTTGG  700

seq1  CTTTGATGTGAGGAATTTGGAGTTGCTCCAGAAGACCTTTACGCAGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGTGAGGAATTTGGAGTTGCTCCAGAAGACCTTTACGCAGTCCC  750

seq1  TCTGCACAGGGACACGTGGCTCCGATACTCTACTTGGTAACCATATGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAGGGACACGTGGCTCCGATACTCTACTTGGTAACCATATGGTC  800

seq1  CTGCATCTGCAAAGCCACAAACAGGAGGAGATCTTGCTGCTTTTCTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTGCAAAGCCACAAACAGGAGGAGATCTTGCTGCTTTTCTCCTC  850

seq1  TCTGCTTTTAAGCACAGGGCAGAGCTGATTGACTGCCTGGCCTTTTTACC  900
      |||||||||||||||| |||||||||||||||||||||||||||||   |
seq2  TCTGCTTTTAAGCACA-GGCAGAGCTGATTGACTGCCTGGCCTTTT--AC  897

seq1  TGTTAAGCTGGAATAGAAGAAAAACAACCCCACCCCGAGGAAGGATGTCA  950
      ||||||||||| |||| ||||||   |||||||||||||    |||||| 
seq2  TGTTAAGCTGG-ATAG-AGAAAA--CACCCCACCCCGAG---AGATGTC-  939

seq1  ATCACCAACAGCTCAGCCGTTCTCACCAGCCTATCCGACAAAACACATAA  1000
      |||||  ||||||||||   ||||| ||| |||| |||| |||||||| |
seq2  ATCAC--ACAGCTCAGC--GTCTCA-CAG-CTAT-CGAC-AAACACAT-A  980

seq1  GCTGTCTCATGTCATTAAACTTTAACTTTAAAAGCTCAGCTCACTGTGAT  1050
      |||||||||||||||  |||||  |||   |||||||||||||||| |||
seq2  GCTGTCTCATGTCAT--AACTT--ACT---AAAGCTCAGCTCACTG-GAT  1022

seq1  TC  1052
      ||
seq2  TC  1024