BAC Information

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BAC

Clone NameB6Ng01-071F06
Chromosome5 (Build37)
Map Location 81,016,926 - 81,183,079
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F06.bB6Ng01-071F06.g
ACCDH889059DH889060
length1,184989
definitionDH889059|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F06, 5' end.DH889060|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,181,867 - 81,183,079)(81,016,926 - 81,017,841)
sequence
gaattctcactgagttcacagttctagagattcaaaccttccagcccaga
ttctgtttctgttgtatgggcattgtgggatgtccattgtggtcatcatc
tttaacaagtgagcagagatatgggaaattgggaatctctcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttcttcttctttttggtttttggtttttcgagacagggtt
tctctgtatagccctggctgtcctggaactcactttgtagaccaggctgg
cctcgaactcagaaatccacctggctctgcctcctgagtgctgggattaa
aggtgtgcaccatcacgcccagctggaaattgggaatctcttatgtcaaa
cttcttacaagaattaacaagaaaaacatggagaactgttcccagtgttt
ttttctgattacatttaatgatgtcatatagactttatttattaagggtt
ccatgaccctccaatgtaacaagctgatatcaaagttcctaacataagct
catggtggacagttaaaactatactgaaatcaagtagtcactccctagat
aaattttcagttttaatacaaatagcttaatacttaaagtaatgaaggag
agtgttcatatatggtctgccaatttaatgatacaggtatgataaaaatt
aaagttcaattatatttttgacagatggtaagtatacataaaaatagtta
ctgagagtagtgataattcagcctggctccttacttccaccttcctttaa
ccttctaaattttatgacaaaagagtgaaaggacgccatactaagtcatc
aaatattttatatgtattaactaaatttcattattcttcaaaaatttaaa
tgtaccatattacatatcatgttaatgcttcatattgtcattatggttgc
tgttctttttttttttaaaccttcttgaggtatatattctatggttttaa
tcttgaattataatttcaaattggatgagtgatttatctggacaagtact
cttgatctcatctgccagtttttcacttcaaaaaatgatgtagttgaact
aaatcctccttagccaagatgatgcactcattttctgaatgtttaccatg
attacattttttccaattacatagtactggaaag
gaattcacagatttcaatcaggaaatcctgtcagctctgacataaaaaat
attttcactattattttttacatagaatatttttcatacccttgagagct
gtattatgaataatggaagaataactagtgatgattttgtttttccaaac
tacttgtaaatgaattgagaaaaatgttaaatgtgtgcttataactatat
acatactcagagagagctttatgaccatactcagacagtgatcgttgttg
aatctaagtaaggggatgaatacggttatttgttttttgctattctgata
ctgaaagtgtttaatataaagggagtctagaaaaataccaattctaacac
atgtattttatttttcagagtatagctactccctaagatctgcatgtggc
cctacctgcttcaaaaagcacttttttttaaaatttttattttattttta
atttattttttacacttcataatccattccctgcccaccaactaccctcc
atctgttccacatcctatatctcctgcccaccctacaccatctccatgtg
gattcctccaaccccaccccacttgaactgcatgggggcctccagtctct
tgagggttaggtgcatcatctctgaatgaacacagatctggaagtcctct
attgtatgtgtgttgtgggcctcatatcagctggtgtatgctgcctgttt
ggtggtccagtgtttgtgagatctcggggtccagattaattaagactact
ggtcctcctacagaattgtccttctcctcagcttctttcagcctttccta
attcaacaacaggagtcagatgcttctgttcattggttgagtgaaaatat
ctgcatttgacattttctactgctcttcagtctttttcagggcagtcatg
ataggtttcttttttgagcctcggtaatactgggccttgggtactccctt
gaactggattcattttgggcctgtcactgtatcttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81181867_81183079
seq2: B6Ng01-071F06.b_46_1229 (reverse)

seq1  CTTTCCAGATAACTTATTGT-TAATTGGAAAAAATGATAATACATTGTAT  49
      ||||||||      || | | ||||||||||||||| |||| ||| ||| 
seq2  CTTTCCAG------TACTATGTAATTGGAAAAAATG-TAAT-CATGGTAA  42

seq1  ATACACTTCAGAAAATTCAGTTGCATCATACTTGTGCTTAAGCAGAGTAT  99
      | |   ||||||||| | || |||||||| |||| || |||| ||  | |
seq2  ACA---TTCAGAAAA-TGAG-TGCATCAT-CTTG-GC-TAAGGAGGATTT  84

seq1  AGTTCAACTACCATCATATTTTGTAGGTGGAAAACTGGCAGGATGAAGAT  149
      |||||||||| |||||| ||||| | ||| |||||||||| |||| ||||
seq2  AGTTCAACTA-CATCATTTTTTG-AAGTGAAAAACTGGCA-GATG-AGAT  130

seq1  CCAAGAGTAACTTGTCCAGATAAATCAACTCATCCAATTTGAAATTATAA  199
       ||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  -CAAGAGT-ACTTGTCCAGATAAATC-ACTCATCCAATTTGAAATTATAA  177

seq1  TTCAAGATTAAAACCATAGAAATATATTAACCTCAAGAAAGGTTTAAAAA  249
      ||||||||||||||||||| |||||||  |||||||| ||||||||||||
seq2  TTCAAGATTAAAACCATAG-AATATAT--ACCTCAAG-AAGGTTTAAAAA  223

seq1  AAAAAAGAACAAGCAACCATAATGACAATATGAAGCATTAACATGATATG  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAC-AGCAACCATAATGACAATATGAAGCATTAACATGATATG  272

seq1  TAATATGGTACATTTAAATTTTTGAAGAATAATGAAATTTAGTTAATACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGGTACATTTAAATTTTTGAAGAATAATGAAATTTAGTTAATACA  322

seq1  TATAAAATATTTGATGACTTAGTATGGCGTCCTTTCACTCTTTTGTCATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATTTGATGACTTAGTATGGCGTCCTTTCACTCTTTTGTCATA  372

seq1  AAATTTAGAAGGTTAAAGGAAGGTGGAAGTAAGGAGCCAGGCTGAATTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGAAGGTTAAAGGAAGGTGGAAGTAAGGAGCCAGGCTGAATTAT  422

seq1  CACTACTCTCAGTAACTATTTTTATGTATACTTACCATCTGTC-AAAATA  498
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACTACTCTCAGTAACTATTTTTATGTATACTTACCATCTGTCAAAAATA  472

seq1  TAATTGAACTTTAATTTTTATCATACCTGTATCATTAAATTGGCAGACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAACTTTAATTTTTATCATACCTGTATCATTAAATTGGCAGACCA  522

seq1  TATATGAACACTCTCCTTCATTACTTTAAGTATTAAGCTATTTGTATTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAACACTCTCCTTCATTACTTTAAGTATTAAGCTATTTGTATTAA  572

seq1  AACTGAAAATTTATCTAGGGAGTGACTACTTGATTTCAGTATAGTTTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAATTTATCTAGGGAGTGACTACTTGATTTCAGTATAGTTTTAA  622

seq1  CTGTCCACCATGAGCTTATGTTAGGAACTTTGATATCAGCTTGTTACATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACCATGAGCTTATGTTAGGAACTTTGATATCAGCTTGTTACATT  672

seq1  GGAGGGTCATGGAACCCTTAATAAATAAAGTCTATATGACATCATTAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTCATGGAACCCTTAATAAATAAAGTCTATATGACATCATTAAAT  722

seq1  GTAATCAGAAAAAAACACTGGGAACAGTTCTCCATGTTTTTCTTGTTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAGAAAAAAACACTGGGAACAGTTCTCCATGTTTTTCTTGTTAAT  772

seq1  TCTTGTAAGAAGTTTGACATAAGAGATTCCCAATTTCCAGCTGGGCGTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAGAAGTTTGACATAAGAGATTCCCAATTTCCAGCTGGGCGTGA  822

seq1  TGGTGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGCCAGGTGGATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGCCAGGTGGATTT  872

seq1  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  922

seq1  GCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAACCAAAAAGAAGAAG  998
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  GCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAACCAAA---AAGAAG  969

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  1019

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAGAGATTCCCAATTTCCCATATCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAGAGATTCCCAATTTCCCATATCTC  1069

seq1  TGCTCACTTGTTAAAGATGATGACCACAATGGACATCCCACAATGCCCAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTTGTTAAAGATGATGACCACAATGGACATCCCACAATGCCCAT  1119

seq1  ACAACAGAAACAGAATCTGGGCTGGAAGGTTTGAATCTCTAGAACTGTGA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAAACAGAATCTGGGCTGGAAGGTTTGAATCTCTAGAACTGTGA  1169

seq1  ACTCAGTGAGAATTC  1213
      |||||||||||||||
seq2  ACTCAGTGAGAATTC  1184

seq1: chr5_81016926_81017841
seq2: B6Ng01-071F06.g_67_982

seq1  GAATTCACAGATTTCAATCAGGAAATCCTGTCAGCTCTGACATAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATTTCAATCAGGAAATCCTGTCAGCTCTGACATAAAAAAT  50

seq1  ATTTTCACTATTATTTTTTACATAGAATATTTTTCATACCCTTGAGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTATTATTTTTTACATAGAATATTTTTCATACCCTTGAGAGCT  100

seq1  GTATTATGAATAATGGAAGAATAACTAGTGATGATTTTGTTTTTCCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGAATAATGGAAGAATAACTAGTGATGATTTTGTTTTTCCAAAC  150

seq1  TACTTGTAAATGAATTGAGAAAAATGTTAAATGTGTGCTTATAACTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTAAATGAATTGAGAAAAATGTTAAATGTGTGCTTATAACTATAT  200

seq1  ACATACTCAGAGAGAGCTTTATGACCATACTCAGACAGTGATCGTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCAGAGAGAGCTTTATGACCATACTCAGACAGTGATCGTTGTTG  250

seq1  AATCTAAGTAAGGGGATGAATACGGTTATTTGTTTTTTGCTATTCTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGTAAGGGGATGAATACGGTTATTTGTTTTTTGCTATTCTGATA  300

seq1  CTGAAAGTGTTTAATATAAAGGGAGTCTAGAAAAATACCAATTCTAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTGTTTAATATAAAGGGAGTCTAGAAAAATACCAATTCTAACAC  350

seq1  ATGTATTTTATTTTTCAGAGTATAGCTACTCCCTAAGATCTGCATGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTATTTTTCAGAGTATAGCTACTCCCTAAGATCTGCATGTGGC  400

seq1  CCTACCTGCTTCAAAAAGCACTTTTTTTTAAAATTTTTATTTTATTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGCTTCAAAAAGCACTTTTTTTTAAAATTTTTATTTTATTTTTA  450

seq1  ATTTATTTTTTACACTTCATAATCCATTCCCTGCCCACCAACTACCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTACACTTCATAATCCATTCCCTGCCCACCAACTACCCTCC  500

seq1  ATCTGTTCCACATCCTATATCTCCTGCCCACCCTACACCATCTCCATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCCACATCCTATATCTCCTGCCCACCCTACACCATCTCCATGTG  550

seq1  GATTCCTCCAACCCCACCCCACTTGAACTGCATGGGGGCCTCCAGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCAACCCCACCCCACTTGAACTGCATGGGGGCCTCCAGTCTCT  600

seq1  TGAGGGTTAGGTGCATCATCTCTGAATGAACACAGATCTGGAAGTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTAGGTGCATCATCTCTGAATGAACACAGATCTGGAAGTCCTCT  650

seq1  ATTGTATGTGTGTTGTGGGCCTCATATCAGCTGGTGTATGCTGCCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTGTGTTGTGGGCCTCATATCAGCTGGTGTATGCTGCCTGTTT  700

seq1  GGTGGTCCAGTGTTTGTGAGATCTCGGGGTCCAGATTAATTAAGACTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCCAGTGTTTGTGAGATCTCGGGGTCCAGATTAATTAAGACTACT  750

seq1  GGTCCTCCTACAGAATTGTCCTTCTCCTCAGCTTCTTTCAGCCTTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTACAGAATTGTCCTTCTCCTCAGCTTCTTTCAGCCTTTCCTA  800

seq1  ATTCAACAACAGGAGTCAGATGCTTCTGTTCATTGGTTGAGTGAAAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAACAGGAGTCAGATGCTTCTGTTCATTGGTTGAGTGAAAATAT  850

seq1  CTGCATTTGACATTTTCTACTGCTCTTCAGTCTTTTTCAGGGCAGTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTGACATTTTCTACTGCTCTTCAGTCTTTTTCAGGGCAGTCATG  900

seq1  ATAGGTTCCTTTTTTG  916
      ||||||| ||||||||
seq2  ATAGGTTTCTTTTTTG  916