BAC Information

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BAC

Clone NameB6Ng01-072B05
Chromosome5 (Build37)
Map Location 120,616,432 - 120,828,016
singlet/doubletdoublet
Overlap geneRbm19, LOC100039609
Upstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
Downstream geneLhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072B05.bB6Ng01-072B05.g
ACCDH889592DH889593
length863540
definitionDH889592|Mus musculus domesticus DNA, BAC clone: B6Ng01-072B05, 5' end.DH889593|Mus musculus domesticus DNA, BAC clone: B6Ng01-072B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,616,432 - 120,617,295)(120,827,463 - 120,828,016)
sequence
gaattcttttcctagagacaatgtcaggaggccatagagacctttgagtc
ttggggtacatcgctctgtacccttgcagagaaggcagcacccagtagcc
acacctcagccatgcttcagctccttcttcactgccagttggtggtggtg
gaagtgacctggctgtctagcattctcagtggggcatcttcccccttgcc
caggaagacctgcctttctcctttccccttcctatcttcctggtcaccat
ccctggtcaggatccagttgccaggaggctctttgcccctaacttggctt
tagtatagacagtcagtagttctggagaacaactacaaagcagcttcacg
cctgcatggttgccgatgatgtgcaactgtcattatgttttgagtgttgg
agtgcatccctaaagtgactgacagggtgtggcagggtgtgtgaggactg
ggaggaagggggagaggctgatacaagtccaggcactcaggagaggtgat
agaagtctgatagaagactgatggaagtccagatgctctgtggggtgacc
agccacagcccactgtgacctgctccaagcaggtgtgagcaggtggggct
gtgcatgcattctggggagcaggcctgagcagccatgggtcagtggaaag
aatattttctggctcagtgccctggcttcgcctgtgggtcccagcccctg
ctcacctcatgaccccttcttcccacaccctaccctggctcccagagcct
gctttttttttttttttttaagatttatttattattatatgtaagtcact
gtagctgtcttcagacacaccaaagaggggatcatatctcattatggata
gttgtgagccacc
tgttctcaaatggggtttctcaaaaggatggtgccctgccgcttggcttc
ctgtgtgggcttttggtgctgacttctggtgcttgtgacatttttcttat
cactgggtttttcttcctcagggtcctctttggcaaaccttggccccggc
cactgcccacagctgggcagtggtcacagccatgacacagacaagcagag
tgctggtcctgctattggcaggatgctggaggccctccatcatgcttagg
gtggggcaggaccttgatttgtgcctgtggcccaagttggatgtccttct
tgtttattcacaaggaaacgaccaggtttgtgagggtgataaagtcacaa
tgtcccatgcttctgagaagttttgagatgtgtgtctgagaccatgtgta
ggagcctgccctccctccctccctccctccctccctacttccttccttcc
ttccttccttccttccttccttccctccttccttccttccctccctcctt
ccatccctccttccttccctccttccttccttacattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_120616432_120617295
seq2: B6Ng01-072B05.b_44_906

seq1  GAATTCTTTTCCTAGAGACAATGTCAGGAGGCCATAGAGACCTTTGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTAGAGACAATGTCAGGAGGCCATAGAGACCTTTGAGTC  50

seq1  TTGGGGTACATCGCTCTGTACCCTTGCAGAGAAGGCAGCACCCAGTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTACATCGCTCTGTACCCTTGCAGAGAAGGCAGCACCCAGTAGCC  100

seq1  ACACCTCAGCCATGCTTCAGCTCCTTCTTCACTGCCAGTTGGTGGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAGCCATGCTTCAGCTCCTTCTTCACTGCCAGTTGGTGGTGGTG  150

seq1  GAAGTGACCTGGCTGTCTAGCATTCTCAGTGGGGCATCTTCCCCCTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACCTGGCTGTCTAGCATTCTCAGTGGGGCATCTTCCCCCTTGCC  200

seq1  CAGGAAGACCTGCCTTTCTCCTTTCCCCTTCCTATCTTCCTGGTCACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACCTGCCTTTCTCCTTTCCCCTTCCTATCTTCCTGGTCACCAT  250

seq1  CCCTGGTCAGGATCCAGTTGCCAGGAGGCTCTTTGCCCCTAACTTGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCAGGATCCAGTTGCCAGGAGGCTCTTTGCCCCTAACTTGGCTT  300

seq1  TAGTATAGACAGTCAGTAGTTCTGGAGAACAACTACAAAGCAGCTTCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGACAGTCAGTAGTTCTGGAGAACAACTACAAAGCAGCTTCACG  350

seq1  CCTGCATGGTTGCCGATGATGTGCAACTGTCATTATGTTTTGAGTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGGTTGCCGATGATGTGCAACTGTCATTATGTTTTGAGTGTTGG  400

seq1  AGTGCATCCCTAAAGTGACTGACAGGGTGTGGCAGGGTGTGTGAGGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATCCCTAAAGTGACTGACAGGGTGTGGCAGGGTGTGTGAGGACTG  450

seq1  GGAGGAAGGGGGAGAGGCTGATACAAGTCCAGGCACTCAGGAGAGGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGGGGAGAGGCTGATACAAGTCCAGGCACTCAGGAGAGGTGAT  500

seq1  AGAAGTCTGATAGAAGACTGATGGAAGTCCAGATGCTCTGTGGGGTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTGATAGAAGACTGATGGAAGTCCAGATGCTCTGTGGGGTGACC  550

seq1  AGCCACAGCCCACTGTGACCTGCTCCAAGCAGGTGTGAGCAGGTGGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCCCACTGTGACCTGCTCCAAGCAGGTGTGAGCAGGTGGGGCT  600

seq1  GTGCATGCATTCTGGGGAGCAGGCCTGAGCAGCCATGGGTCAGTGGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCATTCTGGGGAGCAGGCCTGAGCAGCCATGGGTCAGTGGAAAG  650

seq1  AATATTTTCTGGCTCAGTGCCCTGGCTTCGCCTGTGGGTCCCAGCCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCTGGCTCAGTGCCCTGGCTTCGCCTGTGGGTCCCAGCCCCTG  700

seq1  CTCACCTCATGACCCCTTCTTCCCACACCCTACCCTGGCTCCCAGAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCATGACCCCTTCTTCCCACACCCTACCCTGGCTCCCAGAGCCT  750

seq1  GC--TTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACA  798
      ||  ||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  GCTTTTTTTTTTTTTTTTTAAGATTTATTTA-TTATTATATGTAAGT-CA  798

seq1  CTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCATATCTCATTATGG  848
      |||||||||||||||||||||||| |||||||  ||||||||||||||||
seq2  CTGTAGCTGTCTTCAGACACACCA-AAGAGGGGATCATATCTCATTATGG  847

seq1  ATAGTTGTGAGCCACC  864
      ||||||||||||||||
seq2  ATAGTTGTGAGCCACC  863

seq1: chr5_120827463_120828016
seq2: B6Ng01-072B05.g_67_600 (reverse)

seq1  AAGGAAGGAGGGATGGGGGAGGAAAAGGAGGGAAAGAAGGGAAGGAGGAA  50
      ||||||||||||| ||        ||||||||     | ||||||||| |
seq2  AAGGAAGGAGGGAAGG--------AAGGAGGG-----ATGGAAGGAGGGA  37

seq1  GGGAAGGAGAGAGGAATGGAGGAAGGCAGGAAGGAGGGAGGGAGGGAGGG  100
      ||||||||   ||||    |||| || |||||||| ||| ||| ||| ||
seq2  GGGAAGGA---AGGA----AGGAGGGAAGGAAGGAAGGAAGGAAGGAAGG  80

seq1  AGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAGGCTCCTA  150
      | ||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAGGCTCCTA  130

seq1  CACATGGTCTCAGACACACATCTCAAAACTTCTCAGAAGCATGGGACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTCTCAGACACACATCTCAAAACTTCTCAGAAGCATGGGACATT  180

seq1  GTGACTTTATCACCCTCACAAACCTGGTCGTTTCCTTGTGAATAAACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTATCACCCTCACAAACCTGGTCGTTTCCTTGTGAATAAACAAG  230

seq1  AAGGACATCCAACTTGGGCCACAGGCACAAATCAAGGTCCTGCCCCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATCCAACTTGGGCCACAGGCACAAATCAAGGTCCTGCCCCACCC  280

seq1  TAAGCATGATGGAGGGCCTCCAGCATCCTGCCAATAGCAGGACCAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGATGGAGGGCCTCCAGCATCCTGCCAATAGCAGGACCAGCACT  330

seq1  CTGCTTGTCTGTGTCATGGCTGTGACCACTGCCCAGCTGTGGGCAGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTCTGTGTCATGGCTGTGACCACTGCCCAGCTGTGGGCAGTGGC  380

seq1  CGGGGCCAAGGTTTGCCAAAGAGGACCCTGAGGAAGAAAAACCCAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCCAAGGTTTGCCAAAGAGGACCCTGAGGAAGAAAAACCCAGTGAT  430

seq1  AAGAAAAATGTCACAAGCACCAGAAGTCAGCACCAAAAGCCCACACAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGTCACAAGCACCAGAAGTCAGCACCAAAAGCCCACACAGGA  480

seq1  AGCCAAGCGGCAGGGCACCATCCTTTTGAGAAACCCCATTTGAGAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCGGCAGGGCACCATCCTTTTGAGAAACCCCATTTGAGAACAGA  530

seq1  ATTC  554
      ||||
seq2  ATTC  534