BAC Information

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BAC

Clone NameB6Ng01-072D22
Chromosome5 (Build37)
Map Location 60,221,769 - 60,359,618
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072D22.bB6Ng01-072D22.g
ACCDH889715DH889716
length1,1511,073
definitionDH889715|Mus musculus domesticus DNA, BAC clone: B6Ng01-072D22, 5' end.DH889716|Mus musculus domesticus DNA, BAC clone: B6Ng01-072D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,358,447 - 60,359,618)(60,221,769 - 60,222,854)
sequence
gaattccaagttgagtttttatttctaaagcactcaggtcagtcactggt
aattttcctctattaagaaacacaaaataaggtactcaagtggcatagac
tcaatgaaaggtacattctgccctggtcatgcaagctttactgacatttc
aagtagaaaggttgaaagaatcaagtccattttgagtaattttgtaagtt
gaagaaagattgatccattctgcagttggaagcaccaagaccacaggaaa
ataagagcagttgatgaaaaagatgcaactgtataaatatagattcttta
gtcaagagaaaagcataaaaatgttgagggcacttagaaaacttttacca
aattatctgttagtacctgtatgcgctcacccatttataaatgattttcc
ttaggattgcagaaattcatgaaacatcttgttttcttttctttatgtgg
ggcttaagtcatgaatgcaaattaatctgaataatgtttaatatgtatta
atctgaagcatgcgttttgattagagtgtttgtatcacaggccagtttgt
ttttgtttttgtttttttctcgaaaggccatttatttctcttcactggtt
ttaggatttaacagagtctagaagagtgaactctttctgagatcaagttg
agaactttaaactgccaactgtaaattagcaaatactatatcaatgtgag
tctagtcgctctgtttctctgttcttagagaaatgatccctcaaattacc
cagaagtccttagaaggtattagctggaagtaaaacacatttaataaata
cttatcattaagagtcatttctacatattctgttttcaatgagtaatata
tgcatgcaatgatttggcagatttgaaaagctttctaaaacccatcatta
cttgaaactaaatgtggatgctctggggcacatctttttaaaacaatgag
tttttcccttacttagattttgtcatttaatgaataacaatccaccgcag
ttcaatcaccaaattatagactgtttacttactattacacttggaagtgg
ttttatacttggaagagaaatttcttgatcaggaagtgaattccagggca
catttgggaagagtacttgaaactatgttatcatttgtcatgacgcactt
t
gaattccataaaaaaacacaaagctaacagccttagcagtagctatgtgg
taagcactggcaagcacattaagtgaggttagatatttcaatgttcacac
aaacaaagaatattttattagaataaaaaaatgccattcatctatataag
ctttacttttcatctgaaataaaacttaagttgaccttctgtgttttgat
gtgacaaatatggctacattatatgagccataagacttgaacatgctctt
tacacatgaatctattttctttatcatgagttcatatttaaatttattga
atacatttccaacttggtttgctaaagagcaaccttgtcctagaagacag
gtctgaaacagcacctggcccttgtgcatgtgctcagcaaacatggttgc
catccaggcccaattcagtctaatacaacctctcctccagctgtgaactg
ctggaataaggagaagagctgctcctgaagaacaagatgccattaccatt
gagtcctagactcactggccatccccagaagtgaaactgctgtgagtcaa
gcctgacctgcttcctctaagacagcataggtccttgtttctgctggaag
tacaaatattgagcctggaaagtctcagggcatcccttatgtagacagaa
tctcttctgcaatgtatggaagaattacctgtcaataaaacactgatggc
ccattagtttagtgaggaaatggggagttggaagttccagtccagaggga
gaaattctgcaatagtcaggtgcaggaagcatttgccccaaattctgaag
aaaagtatatgaaaaataagaagaggtgactagctatatgacaagattta
gaagagattaaactgaataattgagatatgagctaggtatattgaaccaa
gctattggcctaggcacttattcatatataaaaataaaatctcaggcaag
ccgggcgtggtgcacacgcctttaatccagcactcagagcagagcagatg
gatttctgagttcgaggcagctggtctacagaagtgagttccagaaagca
gggctaccagagaaccttgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60358447_60359618
seq2: B6Ng01-072D22.b_41_1191 (reverse)

seq1  AAAGTGCGTTTCATGAACCAAAATGATTTAAACATAGTTTTCAGAGTAAC  50
      ||||||||  ||||||    |||||||   ||||||| ||||| ||| ||
seq2  AAAGTGCG--TCATGA---CAAATGAT---AACATAG-TTTCA-AGT-AC  39

seq1  TCTTCCCAAAATGTGCCCCTGGGATTTCAACTTTTCCTGATTCAAGATAT  100
      ||||||| ||||||| |||||| |||    |  ||||||| |||||| ||
seq2  TCTTCCC-AAATGTG-CCCTGGAATT----CACTTCCTGA-TCAAGAAAT  82

seq1  TTCTCTTCAAGGTATAAAACCACTTTCAAGTGTAATAGTAAAGTAAACAG  150
      |||||||| | |||||||||||||| ||||||||||||| ||||||||||
seq2  TTCTCTTCCAAGTATAAAACCACTTCCAAGTGTAATAGT-AAGTAAACAG  131

seq1  TCTTATAATTTGTTTGATTGAACCTGC-GTGGATTGTTATTCATTAAATG  199
      || |||||||||  |||||||| |||| ||||||||||||||||||||||
seq2  TC-TATAATTTG-GTGATTGAA-CTGCGGTGGATTGTTATTCATTAAATG  178

seq1  ACAAAATCTAAGTAAGGGAAAAACTCATTGTTTTAAAAAGATGTGCCCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTAAGTAAGGGAAAAACTCATTGTTTTAAAAAGATGTGCCCCA  228

seq1  GAGCATCCACATTTAGTTTCAAGTAATGATGGGTTTTAGAAAGCTTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCACATTTAGTTTCAAGTAATGATGGGTTTTAGAAAGCTTTTCA  278

seq1  ATTCTGCCAAATCATTGCATGCATATATTACTCATTGAAAACAGAATATG  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCAAATCATTGCATGCATATATTACTCATTGAAAACAGAATATG  328

seq1  TAGAAATGACTCTTAATGATAAGTATTTATTAAATGTGTTTTACTTCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGACTCTTAATGATAAGTATTTATTAAATGTGTTTTACTTCCAG  378

seq1  CTAATACCTTCTAAGGACTTCTGGGTAATTTGAGGGATCATTTCTCTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACCTTCTAAGGACTTCTGGGTAATTTGAGGGATCATTTCTCTAAG  428

seq1  AACAGAGAAACAGAGCGACTAGACTCACATTGATATAGTATTTGCTAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAACAGAGCGACTAGACTCACATTGATATAGTATTTGCTAATT  478

seq1  TACAGTTGGCAGTTTAAAGTTCTCAACTTGATCTCAGAAAGAGTTCACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGGCAGTTTAAAGTTCTCAACTTGATCTCAGAAAGAGTTCACTC  528

seq1  TTCTAGACTCTGTTAAATCCTAAAACCAGTGAAGAGAAATAAATGGCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACTCTGTTAAATCCTAAAACCAGTGAAGAGAAATAAATGGCCTT  578

seq1  TCGAGAAAAAAACAAAAACAAAAACAAACTGGCCTGTGATACAAACACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAAAAAAACAAAAACAAAAACAAACTGGCCTGTGATACAAACACTC  628

seq1  TAATCAAAACGCATGCTTCAGATTAATACATATTAAACATTATTCAGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAACGCATGCTTCAGATTAATACATATTAAACATTATTCAGATT  678

seq1  AATTTGCATTCATGACTTAAGCCCCACATAAAGAAAAGAAAACAAGATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCATTCATGACTTAAGCCCCACATAAAGAAAAGAAAACAAGATGT  728

seq1  TTCATGAATTTCTGCAATCCTAAGGAAAATCATTTATAAATGGGTGAGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAATTTCTGCAATCCTAAGGAAAATCATTTATAAATGGGTGAGCG  778

seq1  CATACAGGTACTAACAGATAATTTGGTAAAAGTTTTCTAAGTGCCCTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGTACTAACAGATAATTTGGTAAAAGTTTTCTAAGTGCCCTCAA  828

seq1  CATTTTTATGCTTTTCTCTTGACTAAAGAATCTATATTTATACAGTTGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATGCTTTTCTCTTGACTAAAGAATCTATATTTATACAGTTGCA  878

seq1  TCTTTTTCATCAACTGCTCTTATTTTCCTGTGGTCTTGGTGCTTCCAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCATCAACTGCTCTTATTTTCCTGTGGTCTTGGTGCTTCCAACT  928

seq1  GCAGAATGGATCAATCTTTCTTCAACTTACAAAATTACTCAAAATGGACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGGATCAATCTTTCTTCAACTTACAAAATTACTCAAAATGGACT  978

seq1  TGATTCTTTCAACCTTTCTACTTGAAATGTCAGTAAAGCTTGCATGACCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTCAACCTTTCTACTTGAAATGTCAGTAAAGCTTGCATGACCA  1028

seq1  GGGCAGAATGTACCTTTCATTGAGTCTATGCCACTTGAGTACCTTATTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAATGTACCTTTCATTGAGTCTATGCCACTTGAGTACCTTATTTT  1078

seq1  GTGTTTCTTAATAGAGGAAAATTACCAGTGACTGACCTGAGTGCTTTAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTAATAGAGGAAAATTACCAGTGACTGACCTGAGTGCTTTAGA  1128

seq1  AATAAAAACTCAACTTGGAATTC  1172
      |||||||||||||||||||||||
seq2  AATAAAAACTCAACTTGGAATTC  1151

seq1: chr5_60221769_60222854
seq2: B6Ng01-072D22.g_65_1137

seq1  GAATTCCATAAAAAAACACAAAGCTAACAGCCTTAGCAGTAGCTATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAAAAACACAAAGCTAACAGCCTTAGCAGTAGCTATGTGG  50

seq1  TAAGCACTGGCAAGCACATTAAGTGAGGTTAGATATTTCAATGTTCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTGGCAAGCACATTAAGTGAGGTTAGATATTTCAATGTTCACAC  100

seq1  AAACAAAGAATATTTTATTAGAATAAAAAAATGCCATTCATCTATATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAATATTTTATTAGAATAAAAAAATGCCATTCATCTATATAAG  150

seq1  CTTTACTTTTCATCTGAAATAAAACTTAAGTTGACCTTCTGTGTTTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTTCATCTGAAATAAAACTTAAGTTGACCTTCTGTGTTTTGAT  200

seq1  GTGACAAATATGGCTACATTATATGAGCCATAAGACTTGAACATGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATATGGCTACATTATATGAGCCATAAGACTTGAACATGCTCTT  250

seq1  TACACATGAATCTATTTTCTTTATCATGAGTTCATATTTAAATTTATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGAATCTATTTTCTTTATCATGAGTTCATATTTAAATTTATTGA  300

seq1  ATACATTTCCAACTTGGTTTGCTAAAGAGCAACCTTGTCCTAGAAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTCCAACTTGGTTTGCTAAAGAGCAACCTTGTCCTAGAAGACAG  350

seq1  GTCTGAAACAGCACCTGGCCCTTGTGCATGTGCTCAGCAAACATGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAACAGCACCTGGCCCTTGTGCATGTGCTCAGCAAACATGGTTGC  400

seq1  CATCCAGGCCCAATTCAGTCTAATACAACCTCTCCTCCAGCTGTGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGCCCAATTCAGTCTAATACAACCTCTCCTCCAGCTGTGAACTG  450

seq1  CTGGAATAAGGAGAAGAGCTGCTCCTGAAGAACAAGATGCCATTACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAAGGAGAAGAGCTGCTCCTGAAGAACAAGATGCCATTACCATT  500

seq1  GAGTCCTAGACTCACTGGCCATCCCCAGAAGTGAAACTGCTGTGAGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTAGACTCACTGGCCATCCCCAGAAGTGAAACTGCTGTGAGTCAA  550

seq1  GCCTGACCTGCTTCCTCTAAGACAGCATAGGTCCTTGTTTCTGCTGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCTGCTTCCTCTAAGACAGCATAGGTCCTTGTTTCTGCTGGAAG  600

seq1  TACAAATATTGAGCCTGGAAAGTCTCAGGGCATCCCTTATGTAGACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATTGAGCCTGGAAAGTCTCAGGGCATCCCTTATGTAGACAGAA  650

seq1  TCTCTTCTGCAATGTATGGAAGAATTACCTGTCAATAAAACACTGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGCAATGTATGGAAGAATTACCTGTCAATAAAACACTGATGGC  700

seq1  CCATTAGTTTAGTGAGGAAATGGGGAGTTGGAAGTTCCAGTCCAGAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGTTTAGTGAGGAAATGGGGAGTTGGAAGTTCCAGTCCAGAGGGA  750

seq1  GAAATTCTGCAATAGTCAGGTGCAGGAAGCATTTGCCCCAAATTCTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTGCAATAGTCAGGTGCAGGAAGCATTTGCCCCAAATTCTGAAG  800

seq1  AAAAGTATATGAAAAATAAGAAGAGGTGACTAGCTATATGACAAGATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATATGAAAAATAAGAAGAGGTGACTAGCTATATGACAAGATTTA  850

seq1  GAAGAGATTAAACTGAATAATTGAGATATGAGCTAGGTATATTGAACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATTAAACTGAATAATTGAGATATGAGCTAGGTATATTGAACCAA  900

seq1  GCTATTGGCCTAGGCACTTATTCATATATAAAAATAAAAATCTCAGGGCA  950
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  GCTATTGGCCTAGGCACTTATTCATATATAAAAAT-AAAATCTCA-GGCA  948

seq1  AGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGAG  1000
      ||||||||||||| ||||||||||||||| |||||||||||   ||||| 
seq2  AGCCGGGCGTGGT-GCACACGCCTTTAAT-CCAGCACTCAG--AGCAGA-  993

seq1  GCAGGATGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG-AGTGAGTT  1049
      ||| ||||||||||||||||||||| ||| ||||||||||| ||||||||
seq2  GCA-GATGGATTTCTGAGTTCGAGG-CAG-CTGGTCTACAGAAGTGAGTT  1040

seq1  CCAGGAAAGCCAGGGCTACACAGAGAAACCCTGTCTG  1086
      ||| ||||| ||||||||| ||||| |||| ||||||
seq2  CCA-GAAAG-CAGGGCTAC-CAGAG-AACCTTGTCTG  1073