BAC Information

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BAC

Clone NameB6Ng01-073C10
Chromosome5 (Build37)
Map Location 87,568,078 - 87,569,238
singlet/doubletsinglet
Overlap geneUgt2b5
Upstream geneUbe1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440
Downstream geneLOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073C10.bB6Ng01-073C10.g
ACCDH890368DH890369
length1,1451,147
definitionDH890368|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C10, 5' end.DH890369|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtcattggatgaacataaaaataatactggatgaactggtaca
gagaggccatgaagtcactgttctgagaccttcagcttactatgttcttg
atcccaaaaaatcacctggccttaagtttgaaacttttcctacatctgtc
agtaaagacaatctggaaaattttttcattaagtttgtggatgtgtggac
ttatgaaatgccaagggatacatgtttgtcatattctcctttactgcaaa
atatgattgatgaattttctgattattttctaagtctttgtaaagatgtt
gtttcaaacaaagagctcatgacaaagctacaggaatccaagtttgatgt
ccttttgtcagatcctgttgcttcctgtggggagctcatagctgaactgc
tccagattccttttctgtacagtatccgcttctctccaggctaccaaatt
gaaaagtccagcgggagatttctactccctccctcttatgtacctgtaat
tctgtcaggattaggtggacaaatgacattcatagagaggataaaaaata
tgatatgcatgctttattttgacttttggttccagatgtttaatgataag
aaatgggactcattttacagtgagtatttgggtaagttaaattttttttt
tctaagtagcttgaaaacctaagtttcacaagtgtgtaaatctttatgtc
catgaaatgcaaaatgtagtagtcttttataggtgatcaaatgtataatg
atataagctatcaaactcacaaactcttataaatgttcatatatttgatc
aaacaggagaaggtatcagtatcagtcctgatagaagacattttggttag
ctatgcaattacatagagatgaaattagatggtccctaagtgattcttta
ctcatttgctgaaagatttcctctattttaatattccctaagcagttacc
aattaaccttgattaatggagattcagaatgacctagtttatacatatat
ataaaacattgaagagttattttctcttgcctagccagtcagtgttttta
tttaaatgaaatgtagggccacagtcatggcaagggttagattgttctgt
agtttagtaccgaagctctctttctgcactactcatgcacagtgg
gaattctcatccgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaaaatccttaatcatcagggaaatgcaatttaaaacaaccctgagat
tccacctcaccccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcctggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccgataagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaata
gagtattactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcaccaa
ggaactcacacagtatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aagcatggaccaagtagagactgccatatccagggatcctccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtaactttctcttgtgagactatgccgggcctagcaaaca
ccgaagtggatgctcacagtcagctattggatagatcacagggctccaat
ggaggagctagagaagtacccaagagctaaggatctgcaccctatagtga
cacattatgactacagtaactgagctctgactctagctgcatatgtatca
aagaatgctagtgcatcctggaaagagaggctcaatgacagcaactgtta
attggacgcaagtcaaaaatggaatggattgtgtagggaagtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87568078_87569238
seq2: B6Ng01-073C10.b_47_1191 (reverse)

seq1  CCACTGTGCATGAGTAGTGGCAGGAAGAGAGCTCTGGTACTAAAACTGTA  50
      |||||||||||||||||| |||| |||||||||  |||||||||    ||
seq2  CCACTGTGCATGAGTAGT-GCAGAAAGAGAGCTTCGGTACTAAA---CTA  46

seq1  CAGAAACAATCCTAACCCTTTGGCCATGACTTGTGGCCCTACATTTTCAT  100
      ||| |||||| |||||||||  |||||||| |||||||||||| ||||| 
seq2  CAG-AACAAT-CTAACCCTT--GCCATGAC-TGTGGCCCTACA-TTTCA-  89

seq1  TTTAAATAAAAACACTGACTGGCCTAGGCAAGAGAAAATAACTTCTTCAA  150
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TTTAAATAAAAACACTGACTGG-CTAGGCAAGAGAAAATAAC-TCTTCAA  137

seq1  TGTTTTATATATATGTATAAACTAGGTCATTCTTGAATCTCCATTAATCA  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTTTATATATATGTATAAACTAGGTCATTC-TGAATCTCCATTAATCA  186

seq1  AGGTTAATTGGTAACTGCTTAGGGAATTATTAAAATAGAGGAAATCTTTT  250
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  AGGTTAATTGGTAACTGCTTAGGGAA-TATTAAAATAGAGGAAATC-TTT  234

seq1  CAGCAAATGAGTAAAGAATCACTTAGGGACCATCTAATTTCATCTCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATGAGTAAAGAATCACTTAGGGACCATCTAATTTCATCTCTATG  284

seq1  TAATTGCATAGCTAACCAAAATGTCTTCTATCAGGACTGATACTGATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCATAGCTAACCAAAATGTCTTCTATCAGGACTGATACTGATACC  334

seq1  TTCTCCTGTTTGATCAAATATATGAACATTTATAAGAGTTTGTGAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTTTGATCAAATATATGAACATTTATAAGAGTTTGTGAGTTTG  384

seq1  ATAGCTTATATCATTATACATTTGATCACCTATAAAAGACTACTACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTATATCATTATACATTTGATCACCTATAAAAGACTACTACATTT  434

seq1  TGCATTTCATGGACATAAAGATTTACACACTTGTGAAACTTAGGTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCATGGACATAAAGATTTACACACTTGTGAAACTTAGGTTTTCA  484

seq1  AGCTACTTAGAAAAAAAAAATTTAACTTACCCAAATACTCACTGTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTAGAAAAAAAAAATTTAACTTACCCAAATACTCACTGTAAAAT  534

seq1  GAGTCCCATTTCTTATCATTAAACATCTGGAACCAAAAGTCAAAATAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCATTTCTTATCATTAAACATCTGGAACCAAAAGTCAAAATAAAG  584

seq1  CATGCATATCATATTTTTTATCCTCTCTATGAATGTCATTTGTCCACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATATCATATTTTTTATCCTCTCTATGAATGTCATTTGTCCACCTA  634

seq1  ATCCTGACAGAATTACAGGTACATAAGAGGGAGGGAGTAGAAATCTCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACAGAATTACAGGTACATAAGAGGGAGGGAGTAGAAATCTCCCG  684

seq1  CTGGACTTTTCAATTTGGTAGCCTGGAGAGAAGCGGATACTGTACAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTTTCAATTTGGTAGCCTGGAGAGAAGCGGATACTGTACAGAAA  734

seq1  AGGAATCTGGAGCAGTTCAGCTATGAGCTCCCCACAGGAAGCAACAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTGGAGCAGTTCAGCTATGAGCTCCCCACAGGAAGCAACAGGAT  784

seq1  CTGACAAAAGGACATCAAACTTGGATTCCTGTAGCTTTGTCATGAGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAAGGACATCAAACTTGGATTCCTGTAGCTTTGTCATGAGCTCT  834

seq1  TTGTTTGAAACAACATCTTTACAAAGACTTAGAAAATAATCAGAAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAAACAACATCTTTACAAAGACTTAGAAAATAATCAGAAAATTC  884

seq1  ATCAATCATATTTTGCAGTAAAGGAGAATATGACAAACATGTATCCCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCATATTTTGCAGTAAAGGAGAATATGACAAACATGTATCCCTTG  934

seq1  GCATTTCATAAGTCCACACATCCACAAACTTAATGAAAAAATTTTCCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCATAAGTCCACACATCCACAAACTTAATGAAAAAATTTTCCAGA  984

seq1  TTGTCTTTACTGACAGATGTAGGAAAAGTTTCAAACTTAAGGCCAGGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTACTGACAGATGTAGGAAAAGTTTCAAACTTAAGGCCAGGTGA  1034

seq1  TTTTTTGGGATCAAGAACATAGTAAGCTGAAGGTCTCAGAACAGTGACTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGGATCAAGAACATAGTAAGCTGAAGGTCTCAGAACAGTGACTT  1084

seq1  CATGGCCTCTCTGTACCAGTTCATCCAGTATTATTTTTATGTTCATCCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTCTCTGTACCAGTTCATCCAGTATTATTTTTATGTTCATCCAA  1134

seq1  TGACTGAATTC  1161
      |||||||||||
seq2  TGACTGAATTC  1145