BAC Information

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BAC

Clone NameB6Ng01-076L02
Chromosome5 (Build37)
Map Location 82,321,065 - 82,322,265
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039506, LOC100039384, Lphn3
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076L02.bB6Ng01-076L02.g
ACCDH892882DH892883
length1,2491,185
definitionDH892882|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L02, 5' end.DH892883|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaatcatggactaagtttgatggaagtaatttcctgagtttt
tcatctagtgtaaggcaagcttgctgcttactatctaaatcgcttttctt
gaaagagagaatactgtaaaatgtgatttctcaaggaaagaggtgtgagt
ggcatgcaagtaaggcaggtacagagaaagagagtataaatatttaaaag
atttgtggaaacaaagagaattctggctctcttcctgcaacacagatcca
gtgaggataataacagacaacacttagaacattatactagacattagaca
ttacattctttgcaaggagatctcagtgtcctgtaatatgaagatgtaaa
ggtggcatttaagttgcaatagagatgccaaggtattaccactgctaagg
ctatgagaaacaccaagctgcagacagtttcaggataccagcaacacaag
tcagaggctatatgtactgtcaatagtggaacttgagttgaaggtagtcc
agagctgctacacaagtatgtcaaattccattctatagtattctcagttc
aaggtctccccttacaagcaaacccatatcttcttaagttgaagcctttg
atgagaaggatcttacatttagggaaacgtttctattgttccagtgacaa
aaatgaggcttttctttcttcttctctttaacagttacagataattcatc
tgcctgttcattcttgtcaactgtaaacttcctactacaattttcctctc
taaatttcacacttttcacatctttgcttttttccctggagatatgagtg
acagcatccgtaggcggatgctagcctcttgaaatatcttctaccaaagg
agctagcccatttattttattcaacctcactcagttcctcaggacacaga
ctgagtgcagctacattctatactatatcactcaaatagctgctaccttg
ggtcactataaatggccttattctcttcttaaacatcatgaccgggtcct
ccactgttcacctttgtgacttctactgggctttccaaggttccataggt
gaatcgattaacctctgcttacaggcatttggaaggcttctcctatctgt
aggccttctaactctggaattcttcttacaaggtagttttaatagttgag
gttaccacagcggttacgttttctagaacaaaggccgaatttcttctatt
ccatataatctctgtgttagttaactttggtccgtggtgtctcgtggtg
gaattctgatcttagcttatgttgtcttgtgtaaattgctttatggatca
agtaacctttttccatattttaaatgaaagtatttatgtaaatcctctat
aaattgccttttgactctgcaattatgtaattttgagcatcaatagctac
ttgaagtgttgcattaaaataagttgctttttcttacccaggaaagtatt
tttgcctattattatttatgaacagcaattatttattagtctactttcaa
ccctttgaaggttttaccaaagaaataacatgtttaaatgcttgtaactg
agaatgtagttcctaatctatttttatatgtttgatggttttatttctca
gttgtatttatttgctagtctccaattgtgatcaaactgatgagaagcca
agttatccacccaatgactgcttttagctgcagggactcaaaataatctc
tgtaggtggggatatttgacaggagtagacgaatatgtactgtctagttt
tgagaagatttgaatacgagtaacaccatgtaggattgagggttataact
gattgaaagaatgggactagaaatatgatcttgataaggcaataaaagga
gtgttggccaagtgtatagccacgctctgagactcggcatccagagatca
caccttataatgcactgattattggatgtcttttatacaagttcctaagg
accctgtcttcactctcatttactatctcatcctcggcctttatatcatt
ttgacatatgttgaaggacatcttttagaataaatatcacaaaaacacat
taccatttacctattcagagtaaagttgtcagatttatttctaacacaaa
gccctagtaagtgtgggccatttggcagactgaggacacagaattaagaa
agcccgtgataagtgggccccccgagactaatagacatactagcaagtag
aaagattggtagagagagggatctacattaagagaggaagctatgcagtt
ttcttcaaaattcttcctgtgcacagctaatcagatgcctaagcaactgg
gttcatttgaaatgtagacctctagcaaaaatggtctgattgtatatcag
ctcgagcaggtactcttatgatattattctaggattacgaatgtcgaagt
ttcctttgtcaggaagttgccagagatcttcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82321065_82322265
seq2: B6Ng01-076L02.g_68_1252

seq1  GAATTCTGATCTTAGCTTATGTTGTCTTGTGTAAATTGCTTTATGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCTTAGCTTATGTTGTCTTGTGTAAATTGCTTTATGGATCA  50

seq1  AGTAACCTTTTTCCATATTTTAAATGAAAGTATTTATGTAAATCCTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCTTTTTCCATATTTTAAATGAAAGTATTTATGTAAATCCTCTAT  100

seq1  AAATTGCCTTTTGACTCTGCAATTATGTAATTTTGAGCATCAATAGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCTTTTGACTCTGCAATTATGTAATTTTGAGCATCAATAGCTAC  150

seq1  TTGAAGTGTTGCATTAAAATAAGTTGCTTTTTCTTACCCAGGAAAGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGTTGCATTAAAATAAGTTGCTTTTTCTTACCCAGGAAAGTATT  200

seq1  TTTGCCTATTATTATTTATGAACAGCAATTATTTATTAGTCTACTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTATTATTATTTATGAACAGCAATTATTTATTAGTCTACTTTCAA  250

seq1  CCCTTTGAAGGTTTTACCAAAGAAATAACATGTTTAAATGCTTGTAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGAAGGTTTTACCAAAGAAATAACATGTTTAAATGCTTGTAACTG  300

seq1  AGAATGTAGTTCCTAATCTATTTTTATATGTTTGATGGTTTTATTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTAGTTCCTAATCTATTTTTATATGTTTGATGGTTTTATTTCTCA  350

seq1  GTTGTATTTATTTGCTAGTCTCCAATTGTGATCAAACTGATGAGAAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTTATTTGCTAGTCTCCAATTGTGATCAAACTGATGAGAAGCCA  400

seq1  AGTTATCCACCCAATGACTGCTTTTAGCTGCAGGGACTCAAAATAATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCCACCCAATGACTGCTTTTAGCTGCAGGGACTCAAAATAATCTC  450

seq1  TGTAGGTGGGGATATTTGACAGGAGTAGACGAATATGTACTGTCTAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGGGGATATTTGACAGGAGTAGACGAATATGTACTGTCTAGTTT  500

seq1  TGAGAAGATTTGAATACGAGTAACACCATGTAGGATTGAGGGTTATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGATTTGAATACGAGTAACACCATGTAGGATTGAGGGTTATAACT  550

seq1  GATTGAAAGAATGGGACTAGAAATATGATCTTGATAAGGCAATAAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAGAATGGGACTAGAAATATGATCTTGATAAGGCAATAAAAGGA  600

seq1  GTGTTGGCCAAGTGTATAGCCACGCTCTGAGACTCGGCATCCAGAGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGCCAAGTGTATAGCCACGCTCTGAGACTCGGCATCCAGAGATCA  650

seq1  CACCTTATAATGCACTGATTATTGGATGTCTTTTATACAAGTTCCTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTATAATGCACTGATTATTGGATGTCTTTTATACAAGTTCCTAAGG  700

seq1  ACCCTGTCTTCACTCTCATTTACTATCTCATCCTCGGCCTTAATATCATT  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCCTGTCTTCACTCTCATTTACTATCTCATCCTCGGCCTTTATATCATT  750

seq1  TTGACATATGTTGAAGGACATCTTTTAGAATAAATATCACAAAAACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATATGTTGAAGGACATCTTTTAGAATAAATATCACAAAAACACAT  800

seq1  TACCATTTACCTATTCAGAGTAAAGTTGTCAGATTTATTTCTAACACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTACCTATTCAGAGTAAAGTTGTCAGATTTATTTCTAACACAAA  850

seq1  GCCCTAGTAAGTGTGGGCCATTTGGCAGACTGAGGACACAGAATTAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGTAAGTGTGGGCCATTTGGCAGACTGAGGACACAGAATTAAGAA  900

seq1  AGCCCGTGATAAGTGGCCACCCCGAGACTAATAGACATACTAGCAAGTAG  950
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  AGCCCGTGATAAGTGGGCCCCCCGAGACTAATAGACATACTAGCAAGTAG  950

seq1  ACAGATTGGTAGAGAGAGGGATCTACATTAAGGAAGAGGAAGCTAATGCA  1000
      | ||||||||||||||||||||||||||||||  |||||||||| |||||
seq2  AAAGATTGGTAGAGAGAGGGATCTACATTAAG--AGAGGAAGCT-ATGCA  997

seq1  GTTTTCTTCAGAAATCTTCCTGTGCACCAGCTAATCAGAGTGCCTAAGCA  1050
      |||||||||| || |||||||||||| |||||||||||| ||||||||| 
seq2  GTTTTCTTCAAAATTCTTCCTGTGCA-CAGCTAATCAGA-TGCCTAAGC-  1044

seq1  AACTGGGTTCATTTGAAATGTAGACACTCTAGCCAGAGATGGTCTGAATG  1100
      ||||||||||||||||||||||||| |||||| || | ||||||||| ||
seq2  AACTGGGTTCATTTGAAATGTAGAC-CTCTAG-CAAAAATGGTCTGATTG  1092

seq1  TATTAATTCAGCTCGAGGCAGTTACTCTCTATGTATATTATTCTAGGATT  1150
      |||    ||||||||| |||| |||||| |||| ||||||||||||||||
seq2  TAT---ATCAGCTCGA-GCAGGTACTCT-TATG-ATATTATTCTAGGATT  1136

seq1  ACG-ATGCCAGATGTTTCTTGTG-CAGGATGTTGGCCACGAGATTCTTCA  1198
      ||| ||| | || ||||| | || ||||| ||| |||| |||| ||||||
seq2  ACGAATGTC-GAAGTTTCCTTTGTCAGGAAGTT-GCCA-GAGA-TCTTCA  1182

seq1  TAT  1201
      |||
seq2  TAT  1185