BAC Information

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BAC

Clone NameB6Ng01-078C05
Chromosome5 (Build37)
Map Location 90,217,105 - 90,347,808
singlet/doubletdoublet
Overlap geneAdamts3
Upstream geneMkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078C05.bB6Ng01-078C05.g
ACCDH893921DH893922
length1,157191
definitionDH893921|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C05, 5' end.DH893922|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,217,105 - 90,218,277)(90,347,618 - 90,347,808)
sequence
gaattcagctcagtggtggagtgactgccattcattcctggcaccacaga
agatttaaaaacaaatctgaagatgactcaaaggaaatataaataaatgg
aatctatgaattcaaataaaggtagtaattaaacatgtaatagttatcca
ctaaaaatataatactaggtgtatttctgaggggcttaactttatagaat
gactcagcatcttaaattaatagctacaagaaaaatattaataatcatat
tttaatgcaacaggaagatgtctatcaatagctaccatgggaaatacaat
gttttaccgattctaacaaatgaaatagtataaagaaaacttaaaatcca
aaataatctcaaattttgctttagaaactatttaaaataacattcatgct
catatcaaagaaaattacattgtagaactttattagcatatactaaatat
atcaagtatgggaataatatatcaagtgagctttgtcatatttttagata
tgtagatatgggactatgtttgatcatagatattactgatgagtaaccac
tatgactagggttaaaatttacagcccctgtgcaaacaatgagccacagt
cattgcttctaaaaggacaagctagactatagtcagcactacagtaaaat
agttgtagatatacttgacagtatgaaagttccatttgtaaacaagaaat
ccttctggatcagaagaactcctcacacagcttgctattttccttttggt
aaaccccacacaatggggtcaatatagtctcagtgggtgttttcaaatgt
gttaaaataaaataagtcacgtggagctcttttctgggtgcagaatctga
ttcatggcctaagtttctatatttattcttaattaagaaactgggtgtgt
ggatatatgctggacacaagcacacacacacacacacacacacacacaca
catacacacacactgaagctcaagaggaacatctgtatctttctcataac
ctcccaccttattatttgcaacagcttctcagtaaatagtgaactcttgt
tttgtattctgactagccagtgagctcttagaccacctgtcctgcttccc
aacacttacttcacaggtacactaggaatttggaactgcactcagtttct
gaatttt
agtcacgtgacatcacccctggcttcaaacttcctttctcagattcgtgc
atgccacagctatagaatttctcttgtatttctggtttgcatacattcct
cagatgtccaatagtacatattctgaagcagtaatttgtttcccagttat
gcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90217105_90218277
seq2: B6Ng01-078C05.b_46_1202

seq1  GAATTCAGCTCAGTGGTGGAGTGACTGCCATTCATTCCTGGCACCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGTGGTGGAGTGACTGCCATTCATTCCTGGCACCACAGA  50

seq1  AGATTTAAAAACAAATCTGAAGATGACTCAAAGGAAATATAAATAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAAAACAAATCTGAAGATGACTCAAAGGAAATATAAATAAATGG  100

seq1  AATCTATGAATTCAAATAAAGGTAGTAATTAAACATGTAATAGTTATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGAATTCAAATAAAGGTAGTAATTAAACATGTAATAGTTATCCA  150

seq1  CTAAAAATATAATACTAGGTGTATTTCTGAGGGGCTTAACTTTATAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATATAATACTAGGTGTATTTCTGAGGGGCTTAACTTTATAGAAT  200

seq1  GACTCAGCATCTTAAATTAATAGCTACAAGAAAAATATTAATAATCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCATCTTAAATTAATAGCTACAAGAAAAATATTAATAATCATAT  250

seq1  TTTAATGCAACAGGAAGATGTCTATCAATAGCTACCATGGGAAATACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCAACAGGAAGATGTCTATCAATAGCTACCATGGGAAATACAAT  300

seq1  GTTTTACCGATTCTAACAAATGAAATAGTATAAAGAAAACTTAAAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACCGATTCTAACAAATGAAATAGTATAAAGAAAACTTAAAATCCA  350

seq1  AAATAATCTCAAATTTTGCTTTAGAAACTATTTAAAATAACATTCATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTCAAATTTTGCTTTAGAAACTATTTAAAATAACATTCATGCT  400

seq1  CATATCAAAGAAAATTACATTGTAGAACTTTATTAGCATATACTAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAAGAAAATTACATTGTAGAACTTTATTAGCATATACTAAATAT  450

seq1  ATCAAGTATGGGAATAATATATCAAGTGAGCTTTGTCATATTTTTAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTATGGGAATAATATATCAAGTGAGCTTTGTCATATTTTTAGATA  500

seq1  TGTAGATATGGGACTATGTTTGATCATAGATATTACTGATGAGTAACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATATGGGACTATGTTTGATCATAGATATTACTGATGAGTAACCAC  550

seq1  TATGACTAGGGTTAAAATTTACAGCCCCTGTGCAAACAATGAGCCACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTAGGGTTAAAATTTACAGCCCCTGTGCAAACAATGAGCCACAGT  600

seq1  CATTGCTTCTAAAAGGACAAGCTAGACTATAGTCAGCACTACAGTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCTAAAAGGACAAGCTAGACTATAGTCAGCACTACAGTAAAAT  650

seq1  AGTTGTAGATATACTTGACAGTATGAAAGTTCCATTTGTAAACAAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGATATACTTGACAGTATGAAAGTTCCATTTGTAAACAAGAAAT  700

seq1  CCTTCTGGATCAGAAGAACTCCTCACACAGCTTGCTATTTTCCTTTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGATCAGAAGAACTCCTCACACAGCTTGCTATTTTCCTTTTGGT  750

seq1  AAACCCCACACAATGGGGTCAATATAGTCTCAGTGGGTGTTTTCAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACACAATGGGGTCAATATAGTCTCAGTGGGTGTTTTCAAATGT  800

seq1  GTTAAAATAAAAATAAGTCACGTGGAGCTCTTTTCTGGGTGCAGAATCTG  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAT-AAAATAAGTCACGTGGAGCTCTTTTCTGGGTGCAGAATCTG  849

seq1  ATTCATGGCCTAAGTTTCTATATTTATTCTTAATTAAGAAACTGGGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGCCTAAGTTTCTATATTTATTCTTAATTAAGAAACTGGGTGTG  899

seq1  TGGAATATATGCTGGACACAAGCACACACACACACACACACACACACACA  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-ATATATGCTGGACACAAGCACACACACACACACACACACACACACA  948

seq1  CACATACACACACACTGAAGCTCAAGAGGAACATCTGTATCTTTCTCCAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACATACACACACACTGAAGCTCAAGAGGAACATCTGTATCTTTCT-CAT  997

seq1  AACCTCCCACCTTATTTATTTGCAACAGGCTCTCAGTAAATAGTGAACTC  1050
      |||||||||||||| |||||||||||||  ||||||||||||||||||||
seq2  AACCTCCCACCTTA-TTATTTGCAACAGCTTCTCAGTAAATAGTGAACTC  1046

seq1  TTTGTTTTGGTTATTCTGACTAGCCAGTGAGCTCTTAGAACCCACCTGTC  1100
       ||||||||  ||||||||||||||||||||||||||||  |||||||||
seq2  -TTGTTTTG--TATTCTGACTAGCCAGTGAGCTCTTAGA--CCACCTGTC  1091

seq1  TCTGCTCCCCCAACACTATAC-TCACAGGTACACTAGGAAATTTGGGAAC  1149
       |||||  ||||||||| ||| ||||||||||||||||||  || |||||
seq2  -CTGCT-TCCCAACACT-TACTTCACAGGTACACTAGGAA--TTTGGAAC  1136

seq1  TTGCACTCAGGTTTTCTGAATTTT  1173
       |||||||||  ||||||||||||
seq2  -TGCACTCAG--TTTCTGAATTTT  1157

seq1: chr5_90347618_90347808
seq2: B6Ng01-078C05.g_76_266 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACATGCATAACTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACATGCATAACTGGG  50

seq1  AAACAAATTACTGCTTCAGAATATGTACTATTGGACATCTGAGGAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTACTGCTTCAGAATATGTACTATTGGACATCTGAGGAATGTA  100

seq1  TGCAAACCAGAAATACAAGAGAAATTCTATAGCTGTGGCATGCACGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCAGAAATACAAGAGAAATTCTATAGCTGTGGCATGCACGAATC  150

seq1  TGAGAAAGGAAGTTTGAAGCCAGGGGTGATGTCACGTGACT  191
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGAAGTTTGAAGCCAGGGGTGATGTCACGTGACT  191