BAC Information

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BAC

Clone NameB6Ng01-078C23
Chromosome5 (Build37)
Map Location 151,374,751 - 151,549,432
singlet/doubletdoublet
Overlap geneB230342M21Rik, BC037393, Aprin
Upstream gene4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2
Downstream geneLOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078C23.bB6Ng01-078C23.g
ACCDH893957DH893958
length1,1421,118
definitionDH893957|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C23, 5' end.DH893958|Mus musculus domesticus DNA, BAC clone: B6Ng01-078C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,374,751 - 151,375,920)(151,548,318 - 151,549,432)
sequence
gaattcacaggcatttttaacagaggggggtaactctcctaatgttaccc
tgaaggactacattcccttctgcactttaggtctaaaagaaaatcagtgc
cattaaagtgacggctcaggtctctggaggcagatagatcatcaaagcgg
caatggcaccaagctgcttcctgcctctgcctccctcacctctccagctc
tgtggagaggctggatctgtcagagacagtagtactgcagcctatagaaa
tgtactagtaccatcttgttttattcatgactgtagcaactaattgataa
tcttggatttcaatttcaatccaattctttccctggagaaagacccttga
ctcctcagcaggtccccagcatcagaccatgagtacggacgcacgctgac
gtcacttgttggagataataaatagaatgacctctgttcagaaacttctg
ggctcaactatttacactggacttagagctctggctaaccctgaacaaag
aataaataccaaaaattgaagtagaaactttctctaggaaaattctgcag
tagctgtgcccgggccattaatatccttggtggtggccaccccttctgta
gccctcgttggagtagaggccattagctctccggttggggagctctgtgt
aggtgttccagtagccggagccactggacggttcgctgttcctgccctgg
tttctgttcgctctgctcggcttttctgcatgaaggacactgtgaaaggt
aacattgtgttcataccgttctttcattcgttgtattttttcttttggga
ccccatggatgtttcttctacgtagaaaaaaggaaaacaaaaaacaaaac
cccacaagtttttagttaaggcagctatcacaataagtaacttacattac
atacaaatcctgcattgcgtggctactgctctgcctcagagaccaggcag
aagcatatgttgtatgtcaagtacttcgacagctctgctgcggtttctca
tgctgccctgcacacccccaaaaacctaggctagctttacaagctttcta
aagaagcttgaacttctaagaagcagtgatgttgacttcgacacacacag
agtataactctgcataggatctgctcgttcatgacatgatac
gaattccaaagtatccagggcatagctatacagagagactctgtctcaaa
aataaaataaaacacacaaagacaaaaccctctgggaattatcaactact
actcacccgtttgtccaatgttcgctctctcacaaaattgagtaagtgat
cattgacaagaagaatatcctttttagcagctgttactatagacacaata
acatcatgtctaatagcttcctcaggatcatgtgacctcactttaagata
ctctgaaaggtaaaatcttctgattaaaatggaaactttaataattaaca
tactgctttaaaagattggaaaagctggtcgttggtggtgcacaccttta
atcccagcacttgggaggcagaggcaggagaatttctgagttcgaggcca
gccaggactacagagtgagttccaggacagtcaggactacacagagaaat
cctgtctcgaaaaaaacaaaaataaataaataaaagattggaaagatctt
tgcaaatcaacagagcaaaagcaaatactaaatagaatgcttaatagttc
aaaaaaattaagagcaagggaagggaagaggctaggagtggggctacccc
ttccctcacaatctaaatgtcctctgcaactgaaaagtgaagcctgcact
cccaggaagggaagctgtttctaactcaatcagctaaagtacagtcagta
tcatttttttttataaaagaataaaataaacaactcatctgatgttcctg
ggaaataatgggattattaccatttctatcatataattatagaagccccg
aatatggttgctgaagaagtaaagctaagacactgggctgaggagaccct
gcttttcatgtggcccaactagcagaagcagaggtatcgtaataggaaca
taatgagctggacctagggcctcctgcttataggtagcatatgtgcagca
tggtcttcactggaggtgggggctggagggtcgctatcacaaaagctatg
cctgtccatggatttgtcttctacctggactgccttgtctggcctcatta
aagagaagatcttagccctttggaagatacccctcttcaggaaagggatt
ggggggtatgaagtgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_151374751_151375920
seq2: B6Ng01-078C23.b_39_1180

seq1  GAATTCACAGGCATTTTTAACAGAGGGGGGTAACTCTCCTAATGTTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGCATTTTTAACAGAGGGGGGTAACTCTCCTAATGTTACCC  50

seq1  TGAAGGACTACATTCCCTTCTGCACTTTAGGTCTAAAAGAAAATCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACTACATTCCCTTCTGCACTTTAGGTCTAAAAGAAAATCAGTGC  100

seq1  CATTAAAGTGACGGCTCAGGTCTCTGGAGGCAGATAGATCATCAAAGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGTGACGGCTCAGGTCTCTGGAGGCAGATAGATCATCAAAGCGG  150

seq1  CAATGGCACCAAGCTGCTTCCTGCCTCTGCCTCCCTCACCTCTCCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCACCAAGCTGCTTCCTGCCTCTGCCTCCCTCACCTCTCCAGCTC  200

seq1  TGTGGAGAGGCTGGATCTGTCAGAGACAGTAGTACTGCAGCCTATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAGGCTGGATCTGTCAGAGACAGTAGTACTGCAGCCTATAGAAA  250

seq1  TGTACTAGTACCATCTTGTTTTATTCATGACTGTAGCAACTAATTGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAGTACCATCTTGTTTTATTCATGACTGTAGCAACTAATTGATAA  300

seq1  TCTTGGATTTCAATTTCAATCCAATTCTTTCCCTGGAGAAAGACCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATTTCAATTTCAATCCAATTCTTTCCCTGGAGAAAGACCCTTGA  350

seq1  CTCCTCAGCAGGTCCCCAGCATCAGACCATGAGTACGGACGCACGCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGCAGGTCCCCAGCATCAGACCATGAGTACGGACGCACGCTGAC  400

seq1  GTCACTTGTTGGAGATAATAAATAGAATGACCTCTGTTCAGAAACTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGTTGGAGATAATAAATAGAATGACCTCTGTTCAGAAACTTCTG  450

seq1  GGCTCAACTATTTACACTGGACTTAGAGCTCTGGCTAACCCTGAACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAACTATTTACACTGGACTTAGAGCTCTGGCTAACCCTGAACAAAG  500

seq1  AATAAATACCAAAAATTGAAGTAGAAACTTTCTCTAGGAAAATTCTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACCAAAAATTGAAGTAGAAACTTTCTCTAGGAAAATTCTGCAG  550

seq1  TAGCTGTGCCCGGGCCATTAATATCCTTGGTGGTGGCCACCCCTTCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGCCCGGGCCATTAATATCCTTGGTGGTGGCCACCCCTTCTGTA  600

seq1  GCCCTCGTTGGAGTAGAGGCCATTAGCTCTCCGGTTGGGGAGCTCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGTTGGAGTAGAGGCCATTAGCTCTCCGGTTGGGGAGCTCTGTGT  650

seq1  AGGTGTTCCAGTAGCCGGAGCCACTGGACGGTTCGCTGTTCCTGCCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCCAGTAGCCGGAGCCACTGGACGGTTCGCTGTTCCTGCCCTGG  700

seq1  TTTCTGTTCGCTCTGCTCGGCTTTTCTGCATGAAGGACACTGTGAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCGCTCTGCTCGGCTTTTCTGCATGAAGGACACTGTGAAAGGT  750

seq1  AACATTGTGTTCATACCGTTCTTTCATTCGTTGTATTTTTTCTTTTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTGTTCATACCGTTCTTTCATTCGTTGTATTTTTTCTTTTGGGA  800

seq1  CCCCATGGATGTTTCTTCTACGTAGAAAAAAGGAAAACAAAAAACAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGATGTTTCTTCTACGTAGAAAAAAGGAAAACAAAAAACAAAAC  850

seq1  CCCACAAGTTTTTAGTTAAGGCAGGCTATCACAATAAGTAACTTACATTA  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCACAAGTTTTTAGTTAAGGCA-GCTATCACAATAAGTAACTTACATTA  899

seq1  CATACAAATCCTGCATTGCGTGGCTACTGCTCTGCCTCAGGAGACCAGGC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATACAAATCCTGCATTGCGTGGCTACTGCTCTGCCTCA-GAGACCAGGC  948

seq1  AGAAGCATATGTTGTATTGTCAAGGTACTTCGACAGCTCTGCTGCGGTTT  1000
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  AGAAGCATATGTTGTA-TGTCAA-GTACTTCGACAGCTCTGCTGCGGTTT  996

seq1  CTCATGCTGCCCTGCACACCCCCAAAAAACCTAGGGCTAGCTTTACAAAG  1050
      ||||||||||||||||||||||| ||||||||| ||||||||||||||  
seq2  CTCATGCTGCCCTGCACACCCCC-AAAAACCTA-GGCTAGCTTTACAA--  1042

seq1  GCCTTTCTAAAAGAAGGCTTGAGACCTTTCTAAAGAAAGGCCAAGTGATG  1100
        |||||| |||||| |||||| ||  |||| |||||  ||  |||||||
seq2  -GCTTTCT-AAAGAA-GCTTGA-AC--TTCT-AAGAA--GC--AGTGATG  1081

seq1  TTGACTTCGAACAACCACCACCAGAGTATAACTCCTGCATTTAGTGATCT  1150
      ||||||||||     |||   |||||||||||| |||||  ||| |||||
seq2  TTGACTTCGA-----CACACACAGAGTATAACT-CTGCA--TAG-GATCT  1122

seq1  GCTCGTTCATGACATGATAC  1170
      ||||||||||||||||||||
seq2  GCTCGTTCATGACATGATAC  1142

seq1: chr5_151548318_151549432
seq2: B6Ng01-078C23.g_69_1185 (reverse)

seq1  TTCACCTCATACCCCC--ATCCCCTTTTCCTG-AGA-GGGTATC-TCCAA  45
      ||||| ||||||||||  |||||  ||||||| ||| ||||||| |||||
seq2  TTCACTTCATACCCCCCAATCCC--TTTCCTGAAGAGGGGTATCTTCCAA  48

seq1  GGGGCTAGGATCTTCCTCTCTTAATGAGGCCAGACAAGGCAGTCCAGGTA  95
       |||||| |||||| |||| ||||||||||||||||||||||||||||||
seq2  AGGGCTAAGATCTT-CTCT-TTAATGAGGCCAGACAAGGCAGTCCAGGTA  96

seq1  GAAGAACATATCCCATGGACAGGCAATAGCTTTTGTGATAGCGACCCTCC  145
      |||| ||| || |||||||||||| |||||||||||||||||||||||||
seq2  GAAG-ACAAAT-CCATGGACAGGC-ATAGCTTTTGTGATAGCGACCCTCC  143

seq1  AGCCCCCACCTCCAGTTGAAGACCATGCTGCACATATGCTACATATAAGC  195
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AGCCCCCACCTCCAG-TGAAGACCATGCTGCACATATGCTACCTATAAGC  192

seq1  AGGGAGGCCTAGGTCCAGCTCATTATGTT-CTATTACGATACCTCTGCTT  244
      |||  | |||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGAGGCCCTAGGTCCAGCTCATTATGTTCCTATTACGATACCTCTGCTT  242

seq1  CTGCTAGTTGGGCCACATG-AAAGCAGGGTCTCCTCAG-CCAGTGTCTTA  292
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  CTGCTAGTTGGGCCACATGAAAAGCAGGGTCTCCTCAGCCCAGTGTCTTA  292

seq1  GCTTTACTTCTTCAGCAACCATATTCGGGGCTTCTATAATTATATGATAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTTCTTCAGCAACCATATTCGGGGCTTCTATAATTATATGATAG  342

seq1  AAATGGTAATAAT-CCATTATTTCCCAGGAACATCAGATGAGTTGTTTAT  391
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATGGTAATAATCCCATTATTTCCCAGGAACATCAGATGAGTTGTTTAT  392

seq1  TTTATTCTTTTAT-AAAAAAAATGATACTGACTGTACTTTAGCTGATTGA  440
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTATAAAAAAAAATGATACTGACTGTACTTTAGCTGATTGA  442

seq1  GTTAGAAACAGCTTCCCTTCCTGGGAGTGCAGGCTTCACTTTTCAGTTGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAACAGCTTCCCTTCCTGGGAGTGCAGGCTTCACTTTTCAGTTGC  492

seq1  AGAGGACATTTAGATTGTGAGGGAAGGGGTAGCCCCACTCCTAGCCTCTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACATTTAGATTGTGAGGGAAGGGGTAGCCCCACTCCTAGCCTCTT  542

seq1  CCCTTCCCTTGCTCTTAATTTTTTTGAACTATTAAGCATTCTATTTAGTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCTTGCTCTTAATTTTTTTGAACTATTAAGCATTCTATTTAGTA  592

seq1  TTTGCTTTTGCTCTGTTGATTTGCAAAGATCTTTCCAATCTTTTATTTAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGCTCTGTTGATTTGCAAAGATCTTTCCAATCTTTTATTTAT  642

seq1  TTATTTTTGTTTTTTTCGAGACAGGATTTCTCTGTGTAGTCCTGACTGTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGTTTTTTTCGAGACAGGATTTCTCTGTGTAGTCCTGACTGTC  692

seq1  CTGGAACTCACTCTGTAGTCCTGGCTGGCCTCGAACTCAGAAATTCTCCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCTGTAGTCCTGGCTGGCCTCGAACTCAGAAATTCTCCT  742

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCAACGACCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCAACGACCA  792

seq1  GCTTTTCCAATCTTTTAAAGCAGTATGTTAATTATTAAAGTTTCCATTTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCAATCTTTTAAAGCAGTATGTTAATTATTAAAGTTTCCATTTT  842

seq1  AATCAGAAGATTTTACCTTTCAGAGTATCTTAAAGTGAGGTCACATGATC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAGATTTTACCTTTCAGAGTATCTTAAAGTGAGGTCACATGATC  892

seq1  CTGAGGAAGCTATTAGACATGATGTTATTGTGTCTATAGTAACAGCTGCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAGCTATTAGACATGATGTTATTGTGTCTATAGTAACAGCTGCT  942

seq1  AAAAAGGATATTCTTCTTGTCAATGATCACTTACTCAATTTTGTGAGAGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGATATTCTTCTTGTCAATGATCACTTACTCAATTTTGTGAGAGA  992

seq1  GCGAACATTGGACAAACGGGTGAGTAGTAGTTGATAATTCCCAGAGGGTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACATTGGACAAACGGGTGAGTAGTAGTTGATAATTCCCAGAGGGTT  1042

seq1  TTGTCTTTGTGTGTTTTATTTTATTTTTGAGACAGAGTCTCTCTGTATAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGTGTGTTTTATTTTATTTTTGAGACAGAGTCTCTCTGTATAG  1092

seq1  CTATGCCCTGGATACTTTGGAATTC  1115
      |||||||||||||||||||||||||
seq2  CTATGCCCTGGATACTTTGGAATTC  1117