BAC Information

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BAC

Clone NameB6Ng01-078D09
Chromosome5 (Build37)
Map Location 88,721,996 - 88,722,182
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615
Downstream geneMuc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078D09.bB6Ng01-078D09.g
ACCDH893975DH893976
length5391,172
definitionDH893975|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D09, 5' end.DH893976|Mus musculus domesticus DNA, BAC clone: B6Ng01-078D09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tttgtttcactctttactgcattttttcatagggttatttgtttccctgg
aatctaacttcttgagttctttgtttatattggatataaataatctgtag
gatgtagggttgttaaagatattttcccagtttgttggttgccattttgt
tctattgacagtgtcctttgccttatagagttttgtaattttgtgaggtc
ccatttgtctattgttgattttaaagcataagctattgttgttctcttca
gataattttcccctgtgcccatgtgctcatggttcatccccactttcttt
tctattagtttcagtgtctatggtttttttttttgatatcttattttttt
aaattttttaattaggtattttcctcatttacatttccaatgctatccca
aaagtaccccataccctcccccgcactcccctacccacccattcccactt
cttggccctggtgttccctgtactgaggcatataaagtttgcacgaccaa
tgggcctctcttttcactgatggccaactaggccatctt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgcgc
atatatccagaatgtgccccaacgggtaagaaggacacatgctccactat
gttcatagctgccttatttattatagccagaagttggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatgtaagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaagagttacagagacaaagttttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaatgctgacaccattgcatacactagcaagatttattgaaa
ggacccagatgtagctgtctcttgtgagattatgccggggcctagcaaac
acagaaatgggatgctcacagtcagctatggatggatcacagggctccca
atggaggagctatgaagtagctaaggagctgaagggtctgcaacccttag
ttgaccaacattaggactaccagtaccctgaggctcttgactctgctgtc
atatgtatcaaaagaatgcctatcggcattcactgtaagaaaggtccatt
gacaggcaactttaatgctccatacacgggaacgccaggctcaaaagggg
gaatggtggggggaatagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88721996_88722182
seq2: B6Ng01-078D09.b_406_591 (reverse)

seq1  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCACATTGGACTTGCA  50
      ||||||||||||| |||||||| || |||||||||| |||||| | ||||
seq2  AAGATGGCCTAGTTGGCCATCAGTGAAAAGAGAGGCCCATTGGTCGTGCA  50

seq1  AACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGT  100
      ||||||||||||| ||||||| |||||| |||||||||| |||||||| |
seq2  AACTTTATATGCCTCAGTACA-GGGAACACCAGGGCCAAGAAGTGGGAAT  99

seq1  GGGTGGGTAGGGGAGTGGTGGGGAGGGTATGGGGGACTTTTGGTATAGCA  150
      |||||||||||||||||  ||||||||||||||| |||||||| ||||||
seq2  GGGTGGGTAGGGGAGTGCGGGGGAGGGTATGGGGTACTTTTGGGATAGCA  149

seq1  TTGGAAATGTAAATGAGGAAAATACCTAATTAAAAAA  187
      |||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATGTAAATGAGGAAAATACCTAATTAAAAAA  186