BAC Information

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BAC

Clone NameB6Ng01-078I16
Chromosome17 (Build37)5 (Build37)
Map Location 42,054,008 - 42,054,47117,697,236 - 17,697,783
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078I16.bB6Ng01-078I16.g
ACCDH894209DH894210
length1,042816
definitionDH894209|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I16, 5' end.DH894210|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,054,008 - 42,054,471)(17,697,236 - 17,697,783)
sequence
gaattcctgatctttccaagacatttatcatgaaagggtgttggatcttg
tcaaatgctttttccgcatctaacaagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaaactacttggtcaggatggatgatagct
ttaatgtgttcgtggatttggttagtgagaattttattgaggatttttgc
atcgatattcataagggaaattggtatgaagttctctatctttgttggat
ctttctttggtttaggtatcagagtaattgtggcttcatagaatgatttg
ggtagagttccctctacttctattttgtgaaatagtttgtgcagaactgg
gattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaatgactgcttctatttct
ttaggggatatgggactgtttagatcattaacttgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagagggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggatgttttccctgtgccctctagtgagtctggctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttctgtttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctcttgggtgaatttgcttctttttttctagagct
ttagatgtgttgtcagctgctagtatgtgttctctcccttttcttcttgg
aggcactcagagctatgagttccctcttagaatgctttcattgtgtccca
taggtttgggtatggtgggtttcatttcataactctaaaggg
gaattctctagaagttccattttcctggaatgaaggaggttctcaggagt
caatgcaggtgaccttagcagaaatgcccaacagttgggatatgaactct
gcagagaccacctctagtagccagacaagaaccccagtggatggatgggg
acactaacccacctgcaaaacttttgactcaaaattggtcctgtataaaa
gaattgcagggacaaaaatggagcagaaactaaaggtggctgaccagtga
ctggcccatgtagagacccatcccttgggcaggcaccaatccctcacact
attactgatgctatgatgtgcttgcagacaggagcctagcatagcagccc
tctgagagacactatccaggagctgactgagacagatgcagatacccaca
gacaaacattggacagaggttggggacccctgtggaagagttagggtaag
gattgatgatcctcaaggaaatggcaactccaaagaaaatcaactcacct
ggacccataggaacttccacaggctaagccaccaaccagagtgcatacat
tggctggttcaaggtccctgacacatatgcagagggctgccatgtttggc
ctcagtaggagagagttcacctgatcctgcagagacttgatgtggcaggc
tggggggggggtgcccaaggggggctgccctttttagagataaagggaat
agggatgggggagaaactctgttagtggggattgggggcagacacatttg
gcatgtaaaaaaaaaaatacatttctctctctttctacatgcctagtcca
gtgtccttctcattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42054008_42054471
seq2: B6Ng01-078I16.b_597_1054 (reverse)

seq1  TACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCAT  50
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TACCCAAACCTATGGGACACAATGAAAGCA-TTCTAAGAGGG-AACTCAT  48

seq1  AGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCT  100
      ||||||||||||||||||||||||| |||||| | |||||||||||||| 
seq2  AGCTCTGAGTGCCTCCAAGAAGAAAAGGGAGAGAACACATACTAGCAGC-  97

seq1  TGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAG  150
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TGACAACACATCT-AAAGCTCTAGAAAAAAA-GAAGCAAATTCACCCAAG  145

seq1  AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGT  195

seq1  GGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCT  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAC-AGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCT  244

seq1  TTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGG  300
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGG  294

seq1  CACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACAT  350
      |||||||| || |||||||||||||||||||||| |||||||||||||||
seq2  CACAGGGAAAACATCCTAATTAACAAAATCAGAACTGAAAAGGGAGACAT  344

seq1  AACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAA  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCCTCTACAAAA  394

seq1  GGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTA  444

seq1  GACAGATACCAGGT  464
      ||||||||||||||
seq2  GACAGATACCAGGT  458

seq1: chr5_17697236_17697783
seq2: B6Ng01-078I16.g_337_884

seq1  CATCCCTTGGGCAGGCACCAATCCCTCACACTATTACTGATGCTATGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTGGGCAGGCACCAATCCCTCACACTATTACTGATGCTATGATG  50

seq1  TGCTTGCAGACAGGAGCCTAGCATAGCAGCCCTCTGAGAGACACTATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAGACAGGAGCCTAGCATAGCAGCCCTCTGAGAGACACTATCCA  100

seq1  GGAGCTGACTGAGACAGATGCAGATACCCACAGACAAACATTGGACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGACTGAGACAGATGCAGATACCCACAGACAAACATTGGACAGAG  150

seq1  GTTGGGGACCCCTGTGGAAGAGTTAGGGTAAGGATTGATGATCCTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGACCCCTGTGGAAGAGTTAGGGTAAGGATTGATGATCCTCAAGG  200

seq1  AAATGGCAACTCCAAAGAAAATCAACTCACCTGGACCCATAGGAACTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAACTCCAAAGAAAATCAACTCACCTGGACCCATAGGAACTTCC  250

seq1  ACAGGCTAAGCCACCAACCAGAGTGCATACATTGGCTGGTTCAAGGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAAGCCACCAACCAGAGTGCATACATTGGCTGGTTCAAGGTCCC  300

seq1  TGACACATATGCAGAGGGCTGCCATGTTTGGCCTCAGTAGGAGAGAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATATGCAGAGGGCTGCCATGTTTGGCCTCAGTAGGAGAGAGTTC  350

seq1  ACCTGATCCTGCAGAGACTTGATGTGGCAGGCTGGGGGGGGGGTGCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCCTGCAGAGACTTGATGTGGCAGGCTGGGGGGGGGGTGCCCAA  400

seq1  GGGGGGCTGCCC-TTTTAGAGATAAAGGGAATAGGGATGGGGGAGAAACT  449
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCTGCCCTTTTTAGAGATAAAGGGAATAGGGATGGGGGAGAAACT  450

seq1  CTGTTAGTGGGGATTGGGGGCAGACAACATTTGGCATGTAAATAAATAAT  499
      ||||||||||||||||||||||||| |||||||||||||||| ||| || 
seq2  CTGTTAGTGGGGATTGGGGGCAGAC-ACATTTGGCATGTAAAAAAAAAAA  499

seq1  AACATTTCTCTCTCTTTCTACATGCCTAGTCCAGTGTCCTTCTCATTGA  548
       ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTCTCTCTTTCTACATGCCTAGTCCAGTGTCCTTCTCATTGA  548