BAC Information

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BAC

Clone NameB6Ng01-078N22
Chromosome5 (Build37)
Map Location 78,206,634 - 78,340,587
singlet/doubletdoublet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078N22.bB6Ng01-078N22.g
ACCDH894452DH894453
length1,183924
definitionDH894452|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N22, 5' end.DH894453|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,206,634 - 78,207,807)(78,340,016 - 78,340,587)
sequence
gaattcaaaagatttgaacatgttccttccatctgtcaccacactgaact
gaggtaacattttaaaactttatgccattctattcagtgattctatgact
tacagtagtttaagaatgtatgatctacacaaagaaaaacaaaagaaaga
acacacttcttaagacttctgtgggaattagtaatacttgagaaaagcac
attgtaagctatgaagtttccacatgaagcctgtacaacagctacaggaa
aatatagatttttcaactgaagggcaaggccggtcactgtcaggtgggtg
ggctcacattccaggaacttgcaacagtgagagctcagaagtgatctctg
agaggatctccctcagaatcctcagcctgactgcaatttcagcgtgatgt
tttctggtgtatgtgaagccatgtcccacagtcctgtgatgactccccaa
ctgcacaatcctgtgatgactccccaactgcagttctgtgatgactgact
acccaactgcacagtcctgtgatgactccccaactgcacagttctgtgat
gactgactacccaactgcacagtcctgtgatgactccccaactgcacaat
cctgtgatgactccccagctgcacagttctgtgatgactgactacccaac
tgcacagtcctgtgatgactacctaactgtacttggtgttcccacaagtt
tcacccagactacacatatcttgtttctgggcctattgaaaaaataatag
tttttgctttatgtactgactttctcttctcggtaacatgtacatttatc
tgcaagggcttttctgcagctcagctttgcaagtctgacatagagttacc
atctccaaatgtgtttattgacttcaaatgtatgaagtctataactacag
gataactgtaatgcacaaactagagattgtattctgtaccccttcccccc
cccccccccacaccacagtaagtcagactgcaatgtttccaactgcagac
aaattacttttccaatgactgggccaaggaattggacttggtcatccgac
cagaattcagaatctcagcctaacatttatgagtaatattggaaggaagg
ccttggaatagaatgtttccatgtgtgtgagatgggcagaaataaaaaag
aatcaaatcctttggtggctcactgcttataag
gaattcaaagtcagccttaacacagcaagtctttgtctcaaaagaaaaag
acaaaaggaaagaaagaaacagaaaaaaaaaacttaaaaacagactcaga
ataaaactaaaggacagttttattaaagtctgagaaaattccaatagggc
aggaagccatgaatcctagtagctgtttaaacaaaggtgacaaaacagga
agagagaaagccatgccttttaagttagggtccaagagaacaggttcagt
aatggaccacactcagctgcatggtaaatgggattgggggtttcgcttca
gagaatgagtgggaagcattccatgcttagggccgcaaccagaggaaaat
gataggaagaacaaggagaagataggcctcagaaatccagtccatggaat
agaatagaggacccaggaagacaatgaaaccagggccgggtaagaaagcc
cccacatggcagggtaatctatcagcagcacactggcacacagaatggga
gatttctcaaaaaaaaaaattagaaatagaactaccaagtagctcactat
tcatgagcctataccctgaaaactccacattcaactttagagatgtttgc
atcccatgcacatggttgctttagtcaccataaagaggaaatggaacaaa
caggtgaacgggtaataaaaggttgatatataaaaatgggatactattca
gctctaaaaaattaactcattaaatttacagaaaatggggctgaagagat
gactcagcggttaagagcactgactgctcttccaaagatccttagttcaa
atcccagcagccacaaggtggctcacaaccatctataaattagatctgat
gtcctcttttgggggtgtctgagacagctacagtgtacttacatataata
aataaataaagattaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78206634_78207807
seq2: B6Ng01-078N22.b_46_1228

seq1  GAATTCAAAAGATTTGAACATGTTCCTTCCATCTGTCACCACACTGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGATTTGAACATGTTCCTTCCATCTGTCACCACACTGAACT  50

seq1  GAGGTAACATTTTAAAACTTTATGCCATTCTATTCAGTGATTCTATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACATTTTAAAACTTTATGCCATTCTATTCAGTGATTCTATGACT  100

seq1  TACAGTAGTTTAAGAATGTATGATCTACACAAAGAAAAACAAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGTTTAAGAATGTATGATCTACACAAAGAAAAACAAAAGAAAGA  150

seq1  ACACACTTCTTAAGACTTCTGTGGGAATTAGTAATACTTGAGAAAAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCTTAAGACTTCTGTGGGAATTAGTAATACTTGAGAAAAGCAC  200

seq1  ATTGTAAGCTATGAAGTTTCCACATGAAGCCTGTACAACAGCTACAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGCTATGAAGTTTCCACATGAAGCCTGTACAACAGCTACAGGAA  250

seq1  AATATAGATTTTTCAACTGAAGGGCAAGGCCGGTCACTGTCAGGTGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATTTTTCAACTGAAGGGCAAGGCCGGTCACTGTCAGGTGGGTG  300

seq1  GGCTCACATTCCAGGAACTTGCAACAGTGAGAGCTCAGAAGTGATCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACATTCCAGGAACTTGCAACAGTGAGAGCTCAGAAGTGATCTCTG  350

seq1  AGAGGATCTCCCTCAGAATCCTCAGCCTGACTGCAATTTCAGCGTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCTCCCTCAGAATCCTCAGCCTGACTGCAATTTCAGCGTGATGT  400

seq1  TTTCTGGTGTATGTGAAGCCATGTCCCACAGTCCTGTGATGACTCCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTGTATGTGAAGCCATGTCCCACAGTCCTGTGATGACTCCCCAA  450

seq1  CTGCACAATCCTGTGATGACTCCCCAACTGCAGTTCTGTGATGACTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAATCCTGTGATGACTCCCCAACTGCAGTTCTGTGATGACTGACT  500

seq1  ACCCAACTGCACAGTCCTGTGATGACTCCCCAACTGCACAGTTCTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTGCACAGTCCTGTGATGACTCCCCAACTGCACAGTTCTGTGAT  550

seq1  GACTGACTACCCAACTGCACAGTCCTGTGATGACTCCCCAACTGCACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACTACCCAACTGCACAGTCCTGTGATGACTCCCCAACTGCACAAT  600

seq1  CCTGTGATGACTCCCCAGCTGCACAGTTCTGTGATGACTGACTACCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATGACTCCCCAGCTGCACAGTTCTGTGATGACTGACTACCCAAC  650

seq1  TGCACAGTCCTGTGATGACTACCTAACTGTACTTGGTGTTCCCACAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTCCTGTGATGACTACCTAACTGTACTTGGTGTTCCCACAAGTT  700

seq1  TCACCCAGACTACACATATCTTGTTTCTGGGCCTATTGAAAAAATAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGACTACACATATCTTGTTTCTGGGCCTATTGAAAAAATAATAG  750

seq1  TTTTTGCTTTATGTACTGACTTTCTCTTCTCGGTAACATGTACATTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTTATGTACTGACTTTCTCTTCTCGGTAACATGTACATTTATC  800

seq1  TGCAAGGGCTTTTCTGCAGCTCAGCTTTGCAAGTCTGACATAGAGTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGCTTTTCTGCAGCTCAGCTTTGCAAGTCTGACATAGAGTTACC  850

seq1  ATCTCCAAATGTGTTTATTGACTTCAAATGTATGAAGTCTATAACTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAATGTGTTTATTGACTTCAAATGTATGAAGTCTATAACTACAG  900

seq1  GATAACTGTAATGCACAAACTAGAGATTGTATTCTGTACCCC-TCCCCCC  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATAACTGTAATGCACAAACTAGAGATTGTATTCTGTACCCCTTCCCCCC  950

seq1  CCCCCCCCCACACCACAGTAAGTCAGACTGCAATGTTTCCAACTGCAGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCACACCACAGTAAGTCAGACTGCAATGTTTCCAACTGCAGAC  1000

seq1  AAATTAC-TTTCCAATGACT-GGCCAAGGAATTGGACTTGGTCATCCGA-  1046
      ||||||| |||||||||||| |||||||||||||||||||||||||||| 
seq2  AAATTACTTTTCCAATGACTGGGCCAAGGAATTGGACTTGGTCATCCGAC  1050

seq1  CAGATTTCAG-ATCTCAGCCCTAACATCTATGAGTAATATTGAAGGTATG  1095
      |||| ||||| ||||||| |||||||| |||||||||||||| | | | |
seq2  CAGAATTCAGAATCTCAG-CCTAACATTTATGAGTAATATTGGAAGGAAG  1099

seq1  CCCTTGGAAT-GGATG-TTCCA--TGTGTGAGATGGGCAGA---ATAAAA  1138
       ||||||||| | ||| |||||  |||||||||||||||||   | ||||
seq2  GCCTTGGAATAGAATGTTTCCATGTGTGTGAGATGGGCAGAAATAAAAAA  1149

seq1  GATTCAATGCTTTGGGTGGGCTCACTGCTATATAAG  1174
      || ||||  | || ||| ||||||||||| ||||||
seq2  GAATCAAATCCTTTGGT-GGCTCACTGCT-TATAAG  1183

seq1: chr5_78340016_78340587
seq2: B6Ng01-078N22.g_70_641 (reverse)

seq1  TTTTCAGGGTATAGGCTCATGAATAGTGAGCTACTTGGTAGTTCTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGGTATAGGCTCATGAATAGTGAGCTACTTGGTAGTTCTATTTC  50

seq1  TAATTTTTTTTTTTGAGAAATCTCCCATTCTGTGTGCCAGTGTGCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTTTTTGAGAAATCTCCCATTCTGTGTGCCAGTGTGCTGCTG  100

seq1  ATAGATTACCCTGCCATGTGGGGGCTTTCTTACCCGGCCCTGGTTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTACCCTGCCATGTGGGGGCTTTCTTACCCGGCCCTGGTTTCATT  150

seq1  GTCTTCCTGGGTCCTCTATTCTATTCCATGGACTGGATTTCTGAGGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTGGGTCCTCTATTCTATTCCATGGACTGGATTTCTGAGGCCTA  200

seq1  TCTTCTCCTTGTTCTTCCTATCATTTTCCTCTGGTTGCGGCCCTAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTTGTTCTTCCTATCATTTTCCTCTGGTTGCGGCCCTAAGCAT  250

seq1  GGAATGCTTCCCACTCATTCTCTGAAGCGAAACCCCCAATCCCATTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTTCCCACTCATTCTCTGAAGCGAAACCCCCAATCCCATTTACC  300

seq1  ATGCAGCTGAGTGTGGTCCATTACTGAACCTGTTCTCTTGGACCCTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTGAGTGTGGTCCATTACTGAACCTGTTCTCTTGGACCCTAACT  350

seq1  TAAAAGGCATGGCTTTCTCTCTTCCTGTTTTGTCACCTTTGTTTAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCATGGCTTTCTCTCTTCCTGTTTTGTCACCTTTGTTTAAACAG  400

seq1  CTACTAGGATTCATGGCTTCCTGCCCTATTGGAATTTTCTCAGACTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGGATTCATGGCTTCCTGCCCTATTGGAATTTTCTCAGACTTTAA  450

seq1  TAAAACTGTCCTTTAGTTTTATTCTGAGTCTGTTTTTAAGTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTCCTTTAGTTTTATTCTGAGTCTGTTTTTAAGTTTTTTTTTT  500

seq1  CTGTTTCTTTCTTTCCTTTTGTCTTTTTCTTTTGAGACAAAGACTTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTTCTTTCCTTTTGTCTTTTTCTTTTGAGACAAAGACTTGCTG  550

seq1  TGTTAAGGCTGACTTTGAATTC  572
      ||||||||||||||||||||||
seq2  TGTTAAGGCTGACTTTGAATTC  572